RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 MYH6P13533 1939 aa24.18■■□□□ 1.46
VPS28-208ENST00000527797 CEBPZQ03701 1054 aaKnown RBP24.17■■□□□ 1.46
VPS28-208ENST00000527797 IKQ13123 557 aaPredicted RBP24.17■■□□□ 1.46
VPS28-208ENST00000527797 NR5A1Q13285 461 aa24.17■■□□□ 1.46
VPS28-208ENST00000527797 ZYXQ15942 572 aaKnown RBP24.17■■□□□ 1.46
VPS28-208ENST00000527797 GALNT17Q6IS24 598 aa24.17■■□□□ 1.46
VPS28-208ENST00000527797 BTNL9Q6UXG8 535 aa24.17■■□□□ 1.46
VPS28-208ENST00000527797 AS3MTQ9HBK9 375 aa24.17■■□□□ 1.46
VPS28-208ENST00000527797 FZD1Q9UP38 647 aa24.17■■□□□ 1.46
VPS28-208ENST00000527797 DCAF8L1A6NGE4 600 aa24.17■■□□□ 1.46
VPS28-208ENST00000527797 ZBTB5O15062 677 aa24.17■■□□□ 1.46
VPS28-208ENST00000527797 USP2O75604 605 aaPredicted RBP24.17■■□□□ 1.46
VPS28-208ENST00000527797 NAPAP54920 295 aa24.17■■□□□ 1.46
VPS28-208ENST00000527797 NPY5RQ15761 445 aa24.17■■□□□ 1.46
VPS28-208ENST00000527797 KIAA1755Q5JYT7 1200 aa24.17■■□□□ 1.46
VPS28-208ENST00000527797 KIAA1683Q9H0B3 1180 aa24.17■■□□□ 1.46
VPS28-208ENST00000527797 RTEL1Q9NZ71 1219 aa24.17■■□□□ 1.46
VPS28-208ENST00000527797 PCDHA4Q9UN74 947 aa24.17■■□□□ 1.46
VPS28-208ENST00000527797 PPP1R12BO60237 982 aaPredicted RBP24.16■■□□□ 1.46
VPS28-208ENST00000527797 PTPRAP18433 802 aa24.16■■□□□ 1.46
VPS28-208ENST00000527797 NF2P35240 595 aa24.16■■□□□ 1.46
VPS28-208ENST00000527797 PRKG1Q13976 671 aa24.16■■□□□ 1.46
VPS28-208ENST00000527797 NOL9Q5SY16 702 aaKnown RBP24.16■■□□□ 1.46
VPS28-208ENST00000527797 FAM83BQ5T0W9 1011 aa24.16■■□□□ 1.46
VPS28-208ENST00000527797 SYDE2Q5VT97 1194 aa24.16■■□□□ 1.46
VPS28-208ENST00000527797 TYW1BQ6NUM6 668 aa24.16■■□□□ 1.46
VPS28-208ENST00000527797 DLK2Q6UY11 383 aa24.16■■□□□ 1.46
VPS28-208ENST00000527797 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.16■■□□□ 1.467e-9■□□□□ 10.3
VPS28-208ENST00000527797 RCOR1Q9UKL0 485 aa24.16■■□□□ 1.46
VPS28-208ENST00000527797 SCN4AP35499 1836 aa24.16■■□□□ 1.46
VPS28-208ENST00000527797 UBE2HP62256 183 aa24.15■■□□□ 1.46
VPS28-208ENST00000527797 KLHL40Q2TBA0 621 aa24.15■■□□□ 1.46
VPS28-208ENST00000527797 BLIDQ8IZY5 108 aa24.15■■□□□ 1.46
VPS28-208ENST00000527797 DAGLBQ8NCG7 672 aa24.15■■□□□ 1.46
VPS28-208ENST00000527797 WDR18Q9BV38 432 aa24.15■■□□□ 1.46
VPS28-208ENST00000527797 FTOQ9C0B1 505 aaKnown RBP eCLIP24.15■■□□□ 1.461e-6■■□□□ 11.8
VPS28-208ENST00000527797 POLR3EQ9NVU0 708 aa24.15■■□□□ 1.46
VPS28-208ENST00000527797 WDR90Q96KV7 1748 aa24.15■■□□□ 1.46
VPS28-208ENST00000527797 GADD45BO75293 160 aaPredicted RBP24.14■■□□□ 1.46
VPS28-208ENST00000527797 MBD3O95983 291 aa24.14■■□□□ 1.46
VPS28-208ENST00000527797 RILPL1Q5EBL4 403 aa24.14■■□□□ 1.46
VPS28-208ENST00000527797 CDCA5Q96FF9 252 aa24.14■■□□□ 1.46
VPS28-208ENST00000527797 ZMYND12Q9H0C1 365 aa24.14■■□□□ 1.46
VPS28-208ENST00000527797 C6orf50Q9HD87 102 aa24.14■■□□□ 1.46
VPS28-208ENST00000527797 GNA11P29992 359 aa24.13■■□□□ 1.45
VPS28-208ENST00000527797 STAT2P52630 851 aa24.13■■□□□ 1.45
VPS28-208ENST00000527797 USP14P54578 494 aa24.13■■□□□ 1.45
VPS28-208ENST00000527797 MAP3K9P80192 1104 aa24.13■■□□□ 1.45
VPS28-208ENST00000527797 CDC37Q16543 378 aaPredicted RBP24.13■■□□□ 1.45
VPS28-208ENST00000527797 ANO1Q5XXA6 986 aa24.13■■□□□ 1.45
VPS28-208ENST00000527797 CHURC1Q8WUH1 139 aa24.13■■□□□ 1.45
VPS28-208ENST00000527797 LPAR1Q92633 364 aa24.13■■□□□ 1.45
VPS28-208ENST00000527797 TNFRSF25Q93038 417 aa24.13■■□□□ 1.45
VPS28-208ENST00000527797 CLEC11AQ9Y240 323 aa24.13■■□□□ 1.45
VPS28-208ENST00000527797 CLIC4Q9Y696 253 aa24.13■■□□□ 1.45
VPS28-208ENST00000527797 BAZ2BQ9UIF8 2168 aaKnown RBP24.13■■□□□ 1.45
VPS28-208ENST00000527797 SMCO2A6NFE2 343 aa24.13■■□□□ 1.45
VPS28-208ENST00000527797 PLA2G6O60733 806 aa24.13■■□□□ 1.45
VPS28-208ENST00000527797 YEATS4O95619 227 aa24.13■■□□□ 1.45
VPS28-208ENST00000527797 NASPP49321 788 aaPredicted RBP24.13■■□□□ 1.45
VPS28-208ENST00000527797 QRICH1Q2TAL8 776 aa24.13■■□□□ 1.45
VPS28-208ENST00000527797 PPP1R18Q6NYC8 613 aa24.13■■□□□ 1.45
VPS28-208ENST00000527797 FAM160B2Q86V87 743 aa24.13■■□□□ 1.45
VPS28-208ENST00000527797 COA7Q96BR5 231 aa24.13■■□□□ 1.45
VPS28-208ENST00000527797 ESYT2A0FGR8 921 aa24.12■■□□□ 1.45
VPS28-208ENST00000527797 IREB2P48200 963 aaKnown RBP24.12■■□□□ 1.45
VPS28-208ENST00000527797 SPP2Q13103 211 aa24.12■■□□□ 1.45
VPS28-208ENST00000527797 STK38Q15208 465 aa24.12■■□□□ 1.45
VPS28-208ENST00000527797 ZNF280CQ8ND82 737 aa24.12■■□□□ 1.45
VPS28-208ENST00000527797 GPT2Q8TD30 523 aa24.12■■□□□ 1.45
VPS28-208ENST00000527797 FEM1BQ9UK73 627 aa24.12■■□□□ 1.45
VPS28-208ENST00000527797 ZHX2Q9Y6X8 837 aa24.12■■□□□ 1.45
VPS28-208ENST00000527797 ATAD5Q96QE3 1844 aa24.12■■□□□ 1.45
VPS28-208ENST00000527797 GOLGA6L4A6NEF3 574 aa24.11■■□□□ 1.45
VPS28-208ENST00000527797 WDR46O15213 610 aaKnown RBP24.11■■□□□ 1.45
VPS28-208ENST00000527797 PPP1R11O60927 126 aaPredicted RBP24.11■■□□□ 1.45
VPS28-208ENST00000527797 MTMR2Q13614 643 aa24.11■■□□□ 1.45
VPS28-208ENST00000527797 LINC00301Q8NCQ3 95 aa24.11■■□□□ 1.45
VPS28-208ENST00000527797 PRR12Q9ULL5 1215 aa24.11■■□□□ 1.45
VPS28-208ENST00000527797 NOL7Q9UMY1 257 aaKnown RBP24.11■■□□□ 1.45
VPS28-208ENST00000527797 SF3A1Q15459 793 aaKnown RBP24.1■■□□□ 1.45
VPS28-208ENST00000527797 BICD2Q8TD16 824 aa24.1■■□□□ 1.45
VPS28-208ENST00000527797 POLR2AP24928 1970 aaKnown RBP24.1■■□□□ 1.45
VPS28-208ENST00000527797 DOCK1Q14185 1865 aa24.1■■□□□ 1.45
VPS28-208ENST00000527797 TOB1P50616 345 aaPredicted RBP24.1■■□□□ 1.45
VPS28-208ENST00000527797 BACE1P56817 501 aa24.1■■□□□ 1.45
VPS28-208ENST00000527797 EARS2Q5JPH6 523 aaKnown RBP24.1■■□□□ 1.45
VPS28-208ENST00000527797 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.1■■□□□ 1.45
VPS28-208ENST00000527797 PIK3AP1Q6ZUJ8 805 aa24.1■■□□□ 1.45
VPS28-208ENST00000527797 KCNG4Q8TDN1 519 aa24.1■■□□□ 1.45
VPS28-208ENST00000527797 PCDHA6Q9UN73 950 aa24.1■■□□□ 1.45
VPS28-208ENST00000527797 PCDHA8Q9Y5H6 950 aa24.1■■□□□ 1.45
VPS28-208ENST00000527797 CSADQ9Y600 493 aa24.1■■□□□ 1.45
VPS28-208ENST00000527797 TCHHQ07283 1943 aa24.09■■□□□ 1.45
VPS28-208ENST00000527797 C19orf81C9J6K1 198 aa24.09■■□□□ 1.45
VPS28-208ENST00000527797 M0R2N6 131 aa24.09■■□□□ 1.45
VPS28-208ENST00000527797 SPTLC2O15270 562 aa24.09■■□□□ 1.45
VPS28-208ENST00000527797 ADCY7P51828 1080 aa24.09■■□□□ 1.45
VPS28-208ENST00000527797 VGLL4Q14135 290 aa24.09■■□□□ 1.45
VPS28-208ENST00000527797 SLC39A14Q15043 492 aa24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 127.2 ms