RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 TTC6Q86TZ1 520 aa16.96■□□□□ 0.31
NKX3-1-202ENST00000523261 MSL3Q8N5Y2 521 aaKnown RBP16.96■□□□□ 0.31
NKX3-1-202ENST00000523261 SLC43A3Q8NBI5 491 aa16.96■□□□□ 0.31
NKX3-1-202ENST00000523261 WNT8AQ9H1J5 351 aa16.96■□□□□ 0.31
NKX3-1-202ENST00000523261 ZHX1Q9UKY1 873 aaPredicted RBP16.96■□□□□ 0.31
NKX3-1-202ENST00000523261 ZNF318Q5VUA4 2279 aa16.95■□□□□ 0.3
NKX3-1-202ENST00000523261 USP5P45974 858 aa16.95■□□□□ 0.3
NKX3-1-202ENST00000523261 PLCD1P51178 756 aa16.95■□□□□ 0.3
NKX3-1-202ENST00000523261 GJA9P57773 515 aa16.95■□□□□ 0.3
NKX3-1-202ENST00000523261 GNASQ5JWF2 1037 aa16.95■□□□□ 0.3
NKX3-1-202ENST00000523261 MAMDC4Q6UXC1 1216 aa16.95■□□□□ 0.3
NKX3-1-202ENST00000523261 FAM178BQ8IXR5 827 aa16.95■□□□□ 0.3
NKX3-1-202ENST00000523261 GJD3Q8N144 294 aa16.95■□□□□ 0.3
NKX3-1-202ENST00000523261 NOC4LQ9BVI4 516 aaKnown RBP16.95■□□□□ 0.3
NKX3-1-202ENST00000523261 ADAMTS5Q9UNA0 930 aa16.95■□□□□ 0.3
NKX3-1-202ENST00000523261 CTAGE5O15320 804 aa16.94■□□□□ 0.3
NKX3-1-202ENST00000523261 IGSF3O75054 1194 aa16.94■□□□□ 0.3
NKX3-1-202ENST00000523261 ARHGEF15O94989 841 aa16.94■□□□□ 0.3
NKX3-1-202ENST00000523261 CYP7A1P22680 504 aa16.94■□□□□ 0.3
NKX3-1-202ENST00000523261 GABPAQ06546 454 aa16.94■□□□□ 0.3
NKX3-1-202ENST00000523261 SAMD1Q6SPF0 538 aaPredicted RBP16.94■□□□□ 0.3
NKX3-1-202ENST00000523261 RPUSD2Q8IZ73 545 aaKnown RBP16.94■□□□□ 0.3
NKX3-1-202ENST00000523261 MIGA1Q8NAN2 632 aa16.94■□□□□ 0.3
NKX3-1-202ENST00000523261 ARNTL2Q8WYA1 636 aa16.94■□□□□ 0.3
NKX3-1-202ENST00000523261 SPC25Q9HBM1 224 aa16.94■□□□□ 0.3
NKX3-1-202ENST00000523261 HDAC5Q9UQL6 1122 aa16.94■□□□□ 0.3
NKX3-1-202ENST00000523261 SRGAP3O43295 1099 aa16.93■□□□□ 0.3
NKX3-1-202ENST00000523261 LPXNO60711 386 aa16.93■□□□□ 0.3
NKX3-1-202ENST00000523261 ALADP13716 330 aa16.93■□□□□ 0.3
NKX3-1-202ENST00000523261 TAP1Q03518 808 aa16.93■□□□□ 0.3
NKX3-1-202ENST00000523261 GRB10Q13322 594 aa16.93■□□□□ 0.3
NKX3-1-202ENST00000523261 TTLL4Q14679 1199 aa16.93■□□□□ 0.3
NKX3-1-202ENST00000523261 CSPP1Q1MSJ5 1256 aa16.93■□□□□ 0.3
NKX3-1-202ENST00000523261 SPICE1Q8N0Z3 855 aa16.93■□□□□ 0.3
NKX3-1-202ENST00000523261 PIH1D3Q9NQM4 214 aaKnown RBP16.93■□□□□ 0.3
NKX3-1-202ENST00000523261 COL4A4P53420 1690 aaPredicted RBP16.92■□□□□ 0.3
NKX3-1-202ENST00000523261 MPHOSPH10O00566 681 aaKnown RBP16.92■□□□□ 0.3
NKX3-1-202ENST00000523261 STAT3P40763 770 aa16.92■□□□□ 0.3
NKX3-1-202ENST00000523261 ACVR2BQ13705 512 aa16.92■□□□□ 0.3
NKX3-1-202ENST00000523261 SIAH1Q8IUQ4 282 aa16.92■□□□□ 0.3
NKX3-1-202ENST00000523261 MEIS3Q99687 375 aa16.92■□□□□ 0.3
NKX3-1-202ENST00000523261 VCPKMTQ9H867 229 aa16.92■□□□□ 0.3
NKX3-1-202ENST00000523261 ZNF214Q9UL59 606 aaPredicted RBP16.92■□□□□ 0.3
NKX3-1-202ENST00000523261 ZDBF2Q9HCK1 2354 aa16.91■□□□□ 0.3
NKX3-1-202ENST00000523261 DNAJC25-GNG10A0A024R161 153 aa16.91■□□□□ 0.3
NKX3-1-202ENST00000523261 WDR46O15213 610 aaKnown RBP16.91■□□□□ 0.3
NKX3-1-202ENST00000523261 COPB2P35606 906 aa16.91■□□□□ 0.3
NKX3-1-202ENST00000523261 NKX3-2P78367 333 aa16.91■□□□□ 0.3
NKX3-1-202ENST00000523261 MTX1Q13505 466 aa16.91■□□□□ 0.3
NKX3-1-202ENST00000523261 CCDC144BQ3MJ40 725 aa16.91■□□□□ 0.3
NKX3-1-202ENST00000523261 CERS3Q8IU89 383 aa16.91■□□□□ 0.3
NKX3-1-202ENST00000523261 SCLYQ96I15 445 aa16.91■□□□□ 0.3
NKX3-1-202ENST00000523261 AGBL1Q96MI9 1066 aa16.91■□□□□ 0.3
NKX3-1-202ENST00000523261 TRPV6Q9H1D0 765 aa16.91■□□□□ 0.3
NKX3-1-202ENST00000523261 FBXO28Q9NVF7 368 aa16.91■□□□□ 0.3
NKX3-1-202ENST00000523261 TMX2Q9Y320 296 aa16.91■□□□□ 0.3
NKX3-1-202ENST00000523261 MCM3APO60318 1980 aa16.9■□□□□ 0.3
NKX3-1-202ENST00000523261 EVX2Q03828 476 aa16.9■□□□□ 0.3
NKX3-1-202ENST00000523261 TTC39AQ5SRH9 613 aa16.9■□□□□ 0.3
NKX3-1-202ENST00000523261 CXCL17Q6UXB2 119 aa16.9■□□□□ 0.3
NKX3-1-202ENST00000523261 CLEC10AQ8IUN9 316 aa16.9■□□□□ 0.3
NKX3-1-202ENST00000523261 REPS2Q8NFH8 660 aa16.9■□□□□ 0.3
NKX3-1-202ENST00000523261 UBE2ZQ9H832 354 aaPredicted RBP16.9■□□□□ 0.3
NKX3-1-202ENST00000523261 GRIN2DO15399 1336 aa16.9■□□□□ 0.3
NKX3-1-202ENST00000523261 USP34Q70CQ2 3546 aa16.89■□□□□ 0.29
NKX3-1-202ENST00000523261 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.89■□□□□ 0.29
NKX3-1-202ENST00000523261 VWA5AO00534 786 aa16.89■□□□□ 0.29
NKX3-1-202ENST00000523261 B4GALT4O60513 344 aa16.89■□□□□ 0.29
NKX3-1-202ENST00000523261 PFKMP08237 780 aa16.89■□□□□ 0.29
NKX3-1-202ENST00000523261 SSTR3P32745 418 aaPredicted RBP16.89■□□□□ 0.29
NKX3-1-202ENST00000523261 ZAP70P43403 619 aa16.89■□□□□ 0.29
NKX3-1-202ENST00000523261 BEX3Q00994 111 aa16.89■□□□□ 0.29
NKX3-1-202ENST00000523261 ITGA7Q13683 1181 aa16.89■□□□□ 0.29
NKX3-1-202ENST00000523261 TMEM179Q6ZVK1 233 aa16.89■□□□□ 0.29
NKX3-1-202ENST00000523261 SPRED2Q7Z698 418 aa16.89■□□□□ 0.29
NKX3-1-202ENST00000523261 ZNF467Q7Z7K2 595 aaPredicted RBP16.89■□□□□ 0.29
NKX3-1-202ENST00000523261 SLC9A7Q96T83 725 aa16.89■□□□□ 0.29
NKX3-1-202ENST00000523261 PHOX2BQ99453 314 aa16.89■□□□□ 0.29
NKX3-1-202ENST00000523261 ABHD16BQ9H3Z7 469 aa16.89■□□□□ 0.29
NKX3-1-202ENST00000523261 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.89■□□□□ 0.29
NKX3-1-202ENST00000523261 POTEB3A0JP26 581 aa16.88■□□□□ 0.29
NKX3-1-202ENST00000523261 LEXMQ3ZCV2 418 aa16.88■□□□□ 0.29
NKX3-1-202ENST00000523261 POTEBQ6S5H4 581 aa16.88■□□□□ 0.29
NKX3-1-202ENST00000523261 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.88■□□□□ 0.29
NKX3-1-202ENST00000523261 DBNDD2Q9BQY9 259 aa16.88■□□□□ 0.29
NKX3-1-202ENST00000523261 ARHGEF10LQ9HCE6 1279 aa16.88■□□□□ 0.29
NKX3-1-202ENST00000523261 CFAP54Q96N23 3096 aa16.88■□□□□ 0.29
NKX3-1-202ENST00000523261 NAV1Q8NEY1 1877 aa16.87■□□□□ 0.29
NKX3-1-202ENST00000523261 DCXO43602 365 aa16.87■□□□□ 0.29
NKX3-1-202ENST00000523261 CABYRO75952 493 aa16.87■□□□□ 0.29
NKX3-1-202ENST00000523261 POLR3DP05423 398 aaPredicted RBP16.87■□□□□ 0.29
NKX3-1-202ENST00000523261 IL9P15248 144 aa16.87■□□□□ 0.29
NKX3-1-202ENST00000523261 CCDC158Q5M9N0 1113 aa16.87■□□□□ 0.29
NKX3-1-202ENST00000523261 PHOSPHO2Q8TCD6 241 aa16.87■□□□□ 0.29
NKX3-1-202ENST00000523261 ANKS1AQ92625 1134 aa16.87■□□□□ 0.29
NKX3-1-202ENST00000523261 DDX11Q96FC9 970 aa16.87■□□□□ 0.29
NKX3-1-202ENST00000523261 FGD4Q96M96 766 aa16.87■□□□□ 0.29
NKX3-1-202ENST00000523261 SEZ6LQ9BYH1 1024 aa16.87■□□□□ 0.29
NKX3-1-202ENST00000523261 SH2D4AQ9H788 454 aa16.87■□□□□ 0.29
NKX3-1-202ENST00000523261 LMCD1Q9NZU5 365 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms