RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 SPDYE16A6NNV3 312 aaPredicted RBP17.42■□□□□ 0.38
NUP54-213ENST00000513352 CA12O43570 354 aa17.42■□□□□ 0.38
NUP54-213ENST00000513352 TBC1D8O95759 1140 aa17.42■□□□□ 0.38
NUP54-213ENST00000513352 DSG3P32926 999 aa17.42■□□□□ 0.38
NUP54-213ENST00000513352 CCT2P78371 535 aaKnown RBP17.42■□□□□ 0.38
NUP54-213ENST00000513352 PRPF38AQ8NAV1 312 aaKnown RBP17.42■□□□□ 0.38
NUP54-213ENST00000513352 FANCBQ8NB91 859 aa17.42■□□□□ 0.38
NUP54-213ENST00000513352 ALDH8A1Q9H2A2 487 aaPredicted RBP17.42■□□□□ 0.38
NUP54-213ENST00000513352 CPA4Q9UI42 421 aa17.42■□□□□ 0.38
NUP54-213ENST00000513352 RLFQ13129 1914 aa17.42■□□□□ 0.38
NUP54-213ENST00000513352 COL11A1P12107 1806 aaPredicted RBP17.42■□□□□ 0.38
NUP54-213ENST00000513352 BAZ2BQ9UIF8 2168 aaKnown RBP17.42■□□□□ 0.38
NUP54-213ENST00000513352 PDIA3P30101 505 aaKnown RBP17.41■□□□□ 0.38
NUP54-213ENST00000513352 GNAQP50148 359 aa17.41■□□□□ 0.38
NUP54-213ENST00000513352 SNAP25P60880 206 aa17.41■□□□□ 0.38
NUP54-213ENST00000513352 GTF3C2Q8WUA4 911 aaPredicted RBP17.41■□□□□ 0.38
NUP54-213ENST00000513352 PIBF1Q8WXW3 757 aa17.41■□□□□ 0.38
NUP54-213ENST00000513352 MAP3K14Q99558 947 aa17.41■□□□□ 0.38
NUP54-213ENST00000513352 SLKQ9H2G2 1235 aaPredicted RBP17.41■□□□□ 0.38
NUP54-213ENST00000513352 VAT1LQ9HCJ6 419 aa17.41■□□□□ 0.38
NUP54-213ENST00000513352 RBM28Q9NW13 759 aaKnown RBP17.41■□□□□ 0.38
NUP54-213ENST00000513352 TSKSQ9UJT2 592 aa17.41■□□□□ 0.38
NUP54-213ENST00000513352 PRR12Q9ULL5 1215 aa17.41■□□□□ 0.38
NUP54-213ENST00000513352 TPCN1Q9ULQ1 816 aa17.41■□□□□ 0.38
NUP54-213ENST00000513352 CEP350Q5VT06 3117 aa17.41■□□□□ 0.38
NUP54-213ENST00000513352 MYPNQ86TC9 1320 aa17.41■□□□□ 0.38
NUP54-213ENST00000513352 MYH6P13533 1939 aa17.41■□□□□ 0.38
NUP54-213ENST00000513352 PALM3A6NDB9 673 aaPredicted RBP17.4■□□□□ 0.38
NUP54-213ENST00000513352 PLA2G6O60733 806 aa17.4■□□□□ 0.38
NUP54-213ENST00000513352 ZBED4O75132 1171 aa17.4■□□□□ 0.38
NUP54-213ENST00000513352 PLEKHA8P1O95397 391 aa17.4■□□□□ 0.38
NUP54-213ENST00000513352 GCLCP48506 637 aaPredicted RBP17.4■□□□□ 0.38
NUP54-213ENST00000513352 SLC4A3P48751 1232 aa17.4■□□□□ 0.38
NUP54-213ENST00000513352 RCAN1P53805 252 aa17.4■□□□□ 0.38
NUP54-213ENST00000513352 PLS1Q14651 629 aa17.4■□□□□ 0.38
NUP54-213ENST00000513352 CCDC174Q6PII3 467 aa17.4■□□□□ 0.38
NUP54-213ENST00000513352 CCDC82Q8N4S0 544 aa17.4■□□□□ 0.38
NUP54-213ENST00000513352 ANKRD13CQ8N6S4 541 aa17.4■□□□□ 0.38
NUP54-213ENST00000513352 ZNF274Q96GC6 653 aaPredicted RBP17.4■□□□□ 0.38
NUP54-213ENST00000513352 NCOA5Q9HCD5 579 aaKnown RBP17.4■□□□□ 0.38
NUP54-213ENST00000513352 CCDC196A0A1B0GTZ2 297 aa17.39■□□□□ 0.37
NUP54-213ENST00000513352 VWA5AO00534 786 aa17.39■□□□□ 0.37
NUP54-213ENST00000513352 TLR2O60603 784 aa17.39■□□□□ 0.37
NUP54-213ENST00000513352 ECM2O94769 699 aaPredicted RBP17.39■□□□□ 0.37
NUP54-213ENST00000513352 BTNL9Q6UXG8 535 aa17.39■□□□□ 0.37
NUP54-213ENST00000513352 ADGRF4Q8IZF3 695 aa17.39■□□□□ 0.37
NUP54-213ENST00000513352 CPXCR1Q8N123 301 aa17.39■□□□□ 0.37
NUP54-213ENST00000513352 CMTR1Q8N1G2 835 aaKnown RBP17.39■□□□□ 0.37
NUP54-213ENST00000513352 R3HDMLQ9H3Y0 253 aa17.39■□□□□ 0.37
NUP54-213ENST00000513352 WBP1LQ9NX94 342 aa17.39■□□□□ 0.37
NUP54-213ENST00000513352 SAGE1Q9NXZ1 904 aa17.39■□□□□ 0.37
NUP54-213ENST00000513352 LIMCH1Q9UPQ0 1083 aa17.39■□□□□ 0.37
NUP54-213ENST00000513352 HPS5Q9UPZ3 1129 aa17.39■□□□□ 0.37
NUP54-213ENST00000513352 CPLX1O14810 134 aa17.38■□□□□ 0.37
NUP54-213ENST00000513352 PEX10O60683 326 aa17.38■□□□□ 0.37
NUP54-213ENST00000513352 LARGE1O95461 756 aa17.38■□□□□ 0.37
NUP54-213ENST00000513352 CDC27P30260 824 aa17.38■□□□□ 0.37
NUP54-213ENST00000513352 EVCP57679 992 aa17.38■□□□□ 0.37
NUP54-213ENST00000513352 TMTC3Q6ZXV5 915 aa17.38■□□□□ 0.37
NUP54-213ENST00000513352 HOMER1Q86YM7 354 aa17.38■□□□□ 0.37
NUP54-213ENST00000513352 MB21D1Q8N884 522 aa17.38■□□□□ 0.37
NUP54-213ENST00000513352 JMYQ8N9B5 988 aa17.38■□□□□ 0.37
NUP54-213ENST00000513352 LZTS2Q9BRK4 669 aa17.38■□□□□ 0.37
NUP54-213ENST00000513352 RABGAP1Q9Y3P9 1069 aa17.38■□□□□ 0.37
NUP54-213ENST00000513352 A0A0G2JMZ2 1700 aa17.38■□□□□ 0.37
NUP54-213ENST00000513352 KCNA4P22459 653 aa17.37■□□□□ 0.37
NUP54-213ENST00000513352 ADD1P35611 737 aaKnown RBP17.37■□□□□ 0.37
NUP54-213ENST00000513352 PPP2R5BQ15173 497 aa17.37■□□□□ 0.37
NUP54-213ENST00000513352 CDC37Q16543 378 aaPredicted RBP17.37■□□□□ 0.37
NUP54-213ENST00000513352 LBX2Q6XYB7 198 aa17.37■□□□□ 0.37
NUP54-213ENST00000513352 NBPF11Q86T75 865 aa17.37■□□□□ 0.37
NUP54-213ENST00000513352 CCAR1Q8IX12 1150 aaKnown RBP17.37■□□□□ 0.37
NUP54-213ENST00000513352 SRBD1Q8N5C6 995 aaKnown RBP17.37■□□□□ 0.37
NUP54-213ENST00000513352 NECAB1Q8N987 351 aa17.37■□□□□ 0.37
NUP54-213ENST00000513352 IL27Q8NEV9 243 aa17.37■□□□□ 0.37
NUP54-213ENST00000513352 CWC22Q9HCG8 908 aaKnown RBP17.37■□□□□ 0.37
NUP54-213ENST00000513352 RAVER2Q9HCJ3 691 aaKnown RBP17.37■□□□□ 0.37
NUP54-213ENST00000513352 TXNRD2Q9NNW7 524 aa17.37■□□□□ 0.37
NUP54-213ENST00000513352 BTBD7Q9P203 1132 aa17.37■□□□□ 0.37
NUP54-213ENST00000513352 ADGRA2Q96PE1 1338 aa17.37■□□□□ 0.37
NUP54-213ENST00000513352 PFKFB2O60825 505 aa17.36■□□□□ 0.37
NUP54-213ENST00000513352 CD2BP2O95400 341 aaKnown RBP17.36■□□□□ 0.37
NUP54-213ENST00000513352 HSPA1AP0DMV8 641 aaKnown RBP17.36■□□□□ 0.37
NUP54-213ENST00000513352 HSPA1BP0DMV9 641 aaKnown RBP17.36■□□□□ 0.37
NUP54-213ENST00000513352 FDX1P10109 184 aa17.36■□□□□ 0.37
NUP54-213ENST00000513352 ERVK-9P63128 1117 aa17.36■□□□□ 0.37
NUP54-213ENST00000513352 ERVK-24P63145 666 aa17.36■□□□□ 0.37
NUP54-213ENST00000513352 TMEM132BQ14DG7 1078 aa17.36■□□□□ 0.37
NUP54-213ENST00000513352 ME3Q16798 604 aa17.36■□□□□ 0.37
NUP54-213ENST00000513352 FAM110CQ1W6H9 321 aa17.36■□□□□ 0.37
NUP54-213ENST00000513352 WDR78Q5VTH9 848 aa17.36■□□□□ 0.37
NUP54-213ENST00000513352 CPLX2Q6PUV4 134 aaKnown RBP17.36■□□□□ 0.37
NUP54-213ENST00000513352 PPP4R3CPQ6ZMV5 832 aa17.36■□□□□ 0.37
NUP54-213ENST00000513352 GPRC5AQ8NFJ5 357 aa17.36■□□□□ 0.37
NUP54-213ENST00000513352 RRP36Q96EU6 259 aaKnown RBP17.36■□□□□ 0.37
NUP54-213ENST00000513352 ZSCAN31Q96LW9 406 aaPredicted RBP17.36■□□□□ 0.37
NUP54-213ENST00000513352 SPZ1Q9BXG8 430 aa17.36■□□□□ 0.37
NUP54-213ENST00000513352 RANBP17Q9H2T7 1088 aaKnown RBP17.36■□□□□ 0.37
NUP54-213ENST00000513352 JMJD4Q9H9V9 463 aa17.36■□□□□ 0.37
NUP54-213ENST00000513352 SLC38A10Q9HBR0 1119 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms