RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 NBPF10Q6P3W6 841 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 SLC30A9Q6PML9 568 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 CNGA4Q8IV77 575 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 CCDC63Q8NA47 563 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 EZH1Q92800 747 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 ITFG2Q969R8 447 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 RBM33Q96EV2 1170 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 ZNF594Q96JF6 807 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 TSC22D3Q99576 134 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 OSBPL1AQ9BXW6 950 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 SALL4Q9UJQ4 1053 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 ABCC3O15438 1527 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 DEPDC5O75140 1603 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 IQGAP3Q86VI3 1631 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 WNT7AO00755 349 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 MAGOHP61326 146 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 MXRA7P84157 204 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 WDR59Q6PJI9 974 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 RIC3Q7Z5B4 369 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 CACNA2D3Q8IZS8 1091 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 MAGOHBQ96A72 148 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 TSPYL2Q9H2G4 693 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 C15orf41Q9Y2V0 281 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 USH1CQ9Y6N9 552 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 AGLP35573 1532 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 QRICH2Q9H0J4 1663 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 UHRF1BP1LA0JNW5 1464 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 SPDYE3A6NKU9 549 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 B4DLN1 442 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 HIP1O00291 1037 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 SLCO1A2P46721 670 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 TOB1P50616 345 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 MORC3Q14149 939 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 LRRC14Q15048 493 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 TSR1Q2NL82 804 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 CCDC38Q502W7 563 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 HAUS3Q68CZ6 603 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 CCDC70Q6NSX1 233 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 C6orf89Q6UWU4 347 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 ISLR2Q6UXK2 745 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 KRI1Q8N9T8 703 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 SELENOSQ9BQE4 189 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 ABCF3Q9NUQ8 709 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 LUC7L2Q9Y383 392 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 PCDHGC5Q9Y5F6 944 aa8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 BAZ2BQ9UIF8 2168 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-207ENST00000508466 MED23Q9ULK4 1368 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 INO80Q9ULG1 1556 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 GNAT3A8MTJ3 354 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 PRDM1O75626 825 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 VIMP08670 466 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 TRIM21P19474 475 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 ATP4AP20648 1035 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 FUT4P22083 530 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 PAPOLAP51003 745 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 PLCD1P51178 756 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 ZNF174Q15697 407 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 HHATQ5VTY9 493 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 PTF1AQ7RTS3 328 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 NBPF5PQ86XG9 351 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 CCDC50Q8IVM0 306 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 OR8K1Q8NGG5 319 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 OSBP2Q969R2 916 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 MAP3K14Q99558 947 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 AP1M1Q9BXS5 423 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 MAP3K4Q9Y6R4 1608 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 MYH10P35580 1976 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 SALL1Q9NSC2 1324 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 MYH8P13535 1937 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 NPHP3-ACAD11A0A0J9YXS1 232 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 ZNF263O14978 683 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 SMNDC1O75940 238 aaKnown RBP eCLIP8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 FAM163BP0C2L3 166 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 COPB1P53618 953 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 PMS1P54277 932 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 LLGL1Q15334 1064 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 TAF11Q15544 211 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 SPATA1Q5VX52 437 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 MLKLQ8NB16 471 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 DDX50Q9BQ39 737 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 KANSL2Q9H9L4 492 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 NHEJ1Q9H9Q4 299 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 GOPCQ9HD26 462 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 RHBDL2Q9NX52 303 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 PNMA3Q9UL41 463 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 SPHKAPQ2M3C7 1700 aa8.05□□□□□ -1.12
LIMCH1-207ENST00000508466 CDC42BPBQ9Y5S2 1711 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 ANKRD33BA6NCL7 494 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 B4E1Z4 1266 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 KCNJ18B7U540 433 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 FGAP02671 866 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 SLC8A1P32418 973 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 PCK1P35558 622 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 VAV2P52735 878 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 ANTXR2P58335 489 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 RASSF7Q02833 373 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 KCNJ12Q14500 433 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 TTF1Q15361 905 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 MFSD4BQ5TF39 518 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 USPL1Q5W0Q7 1092 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms