RNA–Protein interactions for RNA: ENST00000479894.1

HDLBP-238, Transcript of high density lipoprotein binding protein, human

TSL 5

Gene HDLBP, Length 840 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDLBP-238	ENST00000479894	GPR37L1	O60883	481 aa		18.77	■□□□□ 0.6
HDLBP-238	ENST00000479894	TAL1	P17542	331 aa	Predicted RBP	18.77	■□□□□ 0.6
HDLBP-238	ENST00000479894	CYP7A1	P22680	504 aa		18.77	■□□□□ 0.6
HDLBP-238	ENST00000479894	GABPA	Q06546	454 aa		18.77	■□□□□ 0.6
HDLBP-238	ENST00000479894	OS9	Q13438	667 aa	Predicted RBP	18.77	■□□□□ 0.6
HDLBP-238	ENST00000479894	KCTD2	Q14681	263 aa		18.77	■□□□□ 0.6
HDLBP-238	ENST00000479894	PCSK9	Q8NBP7	692 aa	Known RBP	18.77	■□□□□ 0.6
HDLBP-238	ENST00000479894	ATG4C	Q96DT6	458 aa		18.77	■□□□□ 0.6
HDLBP-238	ENST00000479894	FAM184B	Q9ULE4	1060 aa		18.77	■□□□□ 0.6
HDLBP-238	ENST00000479894	TLR3	O15455	904 aa	Known RBP	18.76	■□□□□ 0.59
HDLBP-238	ENST00000479894	SURF6	O75683	361 aa	Known RBP	18.76	■□□□□ 0.59
HDLBP-238	ENST00000479894	FLOT1	O75955	427 aa		18.76	■□□□□ 0.59
HDLBP-238	ENST00000479894	ACR	P10323	421 aa		18.76	■□□□□ 0.59
HDLBP-238	ENST00000479894	POU3F3	P20264	500 aa	Predicted RBP	18.76	■□□□□ 0.59
HDLBP-238	ENST00000479894	COPB2	P35606	906 aa		18.76	■□□□□ 0.59
HDLBP-238	ENST00000479894	TFF2	Q03403	129 aa		18.76	■□□□□ 0.59
HDLBP-238	ENST00000479894	YBX2	Q9Y2T7	364 aa	Known RBP	18.76	■□□□□ 0.59
HDLBP-238	ENST00000479894	NOP58	Q9Y2X3	529 aa	Known RBP	18.76	■□□□□ 0.59
HDLBP-238	ENST00000479894	PNMA6E	A0A0J9YXQ4	647 aa		18.75	■□□□□ 0.59
HDLBP-238	ENST00000479894		A0A0U1RQG5	324 aa	Predicted RBP	18.75	■□□□□ 0.59
HDLBP-238	ENST00000479894	ARVCF	O00192	962 aa		18.75	■□□□□ 0.59
HDLBP-238	ENST00000479894	RAB11FIP3	O75154	756 aa		18.75	■□□□□ 0.59
HDLBP-238	ENST00000479894	DUSP11	O75319	330 aa	Known RBP	18.75	■□□□□ 0.59
HDLBP-238	ENST00000479894	FGB	P02675	491 aa		18.75	■□□□□ 0.59
HDLBP-238	ENST00000479894	ZAP70	P43403	619 aa		18.75	■□□□□ 0.59
HDLBP-238	ENST00000479894	PLCD1	P51178	756 aa		18.75	■□□□□ 0.59
HDLBP-238	ENST00000479894	KCNQ1	P51787	676 aa		18.75	■□□□□ 0.59
HDLBP-238	ENST00000479894	TMEM132B	Q14DG7	1078 aa		18.75	■□□□□ 0.59
HDLBP-238	ENST00000479894	RIOX2	Q8IUF8	465 aa		18.75	■□□□□ 0.59
HDLBP-238	ENST00000479894	FAM126B	Q8IXS8	530 aa		18.75	■□□□□ 0.59
HDLBP-238	ENST00000479894	LENG1	Q96BZ8	264 aa	Predicted RBP	18.75	■□□□□ 0.59
HDLBP-238	ENST00000479894	ZBTB47	Q9UFB7	747 aa	Predicted RBP	18.75	■□□□□ 0.59
HDLBP-238	ENST00000479894	ADAMTS5	Q9UNA0	930 aa		18.75	■□□□□ 0.59
HDLBP-238	ENST00000479894	COG5	Q9UP83	839 aa		18.75	■□□□□ 0.59
HDLBP-238	ENST00000479894	APBB1	O00213	710 aa		18.74	■□□□□ 0.59
HDLBP-238	ENST00000479894	PGK2	P07205	417 aa		18.74	■□□□□ 0.59
HDLBP-238	ENST00000479894	IRX6	P78412	446 aa	Predicted RBP	18.74	■□□□□ 0.59
HDLBP-238	ENST00000479894	HDAC1	Q13547	482 aa	Predicted RBP	18.74	■□□□□ 0.59
HDLBP-238	ENST00000479894	MIGA1	Q8NAN2	632 aa		18.74	■□□□□ 0.59
HDLBP-238	ENST00000479894	PPP1R12C	Q9BZL4	782 aa		18.74	■□□□□ 0.59
HDLBP-238	ENST00000479894	SH2D4A	Q9H788	454 aa		18.74	■□□□□ 0.59
HDLBP-238	ENST00000479894	PIH1D3	Q9NQM4	214 aa	Known RBP	18.74	■□□□□ 0.59
HDLBP-238	ENST00000479894	WDR46	O15213	610 aa	Known RBP	18.73	■□□□□ 0.59
HDLBP-238	ENST00000479894	ASGR1	P07306	291 aa		18.73	■□□□□ 0.59
HDLBP-238	ENST00000479894	TNNI3K	Q59H18	835 aa		18.73	■□□□□ 0.59
HDLBP-238	ENST00000479894	KIAA1755	Q5JYT7	1200 aa		18.73	■□□□□ 0.59
HDLBP-238	ENST00000479894	PPP2R2D	Q66LE6	453 aa		18.73	■□□□□ 0.59
HDLBP-238	ENST00000479894	TMEM179	Q6ZVK1	233 aa		18.73	■□□□□ 0.59
HDLBP-238	ENST00000479894	DBNDD2	Q9BQY9	259 aa		18.73	■□□□□ 0.59
HDLBP-238	ENST00000479894	SPC25	Q9HBM1	224 aa		18.73	■□□□□ 0.59
HDLBP-238	ENST00000479894	TMX2	Q9Y320	296 aa		18.73	■□□□□ 0.59
HDLBP-238	ENST00000479894	PCDHA11	Q9Y5I1	949 aa		18.73	■□□□□ 0.59
HDLBP-238	ENST00000479894	FPGT-TNNI3K	V9GXZ4	949 aa		18.73	■□□□□ 0.59
HDLBP-238	ENST00000479894	BRWD1	Q9NSI6	2320 aa		18.73	■□□□□ 0.59
HDLBP-238	ENST00000479894	MPHOSPH10	O00566	681 aa	Known RBP	18.72	■□□□□ 0.59
HDLBP-238	ENST00000479894	CD4	P01730	458 aa		18.72	■□□□□ 0.59
HDLBP-238	ENST00000479894	MAMDC4	Q6UXC1	1216 aa		18.72	■□□□□ 0.59
HDLBP-238	ENST00000479894	MICALL1	Q8N3F8	863 aa		18.72	■□□□□ 0.59
HDLBP-238	ENST00000479894	VCPKMT	Q9H867	229 aa		18.72	■□□□□ 0.59
HDLBP-238	ENST00000479894	ARHGEF10L	Q9HCE6	1279 aa		18.72	■□□□□ 0.59
HDLBP-238	ENST00000479894	TLL1	O43897	1013 aa		18.71	■□□□□ 0.59
HDLBP-238	ENST00000479894	POLR3D	P05423	398 aa	Predicted RBP	18.71	■□□□□ 0.59
HDLBP-238	ENST00000479894	STAT3	P40763	770 aa		18.71	■□□□□ 0.59
HDLBP-238	ENST00000479894	SKIV2L	Q15477	1246 aa	Known RBP	18.71	■□□□□ 0.59
HDLBP-238	ENST00000479894	UPF3A	Q9H1J1	476 aa	Known RBP	18.71	■□□□□ 0.59
HDLBP-238	ENST00000479894	C11orf16	Q9NQ32	467 aa		18.71	■□□□□ 0.59
HDLBP-238	ENST00000479894	PCDHB15	Q9Y5E8	787 aa		18.71	■□□□□ 0.59
HDLBP-238	ENST00000479894	MYADML2	A6NDP7	307 aa		18.7	■□□□□ 0.58
HDLBP-238	ENST00000479894	GTPBP6	O43824	516 aa	Predicted RBP	18.7	■□□□□ 0.58
HDLBP-238	ENST00000479894	IDH1	O75874	414 aa	Known RBP	18.7	■□□□□ 0.58
HDLBP-238	ENST00000479894	SNAI1	O95863	264 aa	Predicted RBP	18.7	■□□□□ 0.58
HDLBP-238	ENST00000479894	C6orf222	P0C671	652 aa	Predicted RBP	18.7	■□□□□ 0.58
HDLBP-238	ENST00000479894	CYP2C18	P33260	490 aa		18.7	■□□□□ 0.58
HDLBP-238	ENST00000479894	GJA9	P57773	515 aa		18.7	■□□□□ 0.58
HDLBP-238	ENST00000479894	ALYREF	Q86V81	257 aa	Known RBP	18.7	■□□□□ 0.58
HDLBP-238	ENST00000479894	SIRT2	Q8IXJ6	389 aa		18.7	■□□□□ 0.58
HDLBP-238	ENST00000479894	MAGEB6	Q8N7X4	407 aa		18.7	■□□□□ 0.58
HDLBP-238	ENST00000479894	VTI1A	Q96AJ9	217 aa		18.7	■□□□□ 0.58
HDLBP-238	ENST00000479894	DCTPP1	Q9H773	170 aa		18.7	■□□□□ 0.58
HDLBP-238	ENST00000479894	ZNF214	Q9UL59	606 aa	Predicted RBP	18.7	■□□□□ 0.58
HDLBP-238	ENST00000479894	MTCH2	Q9Y6C9	303 aa		18.7	■□□□□ 0.58
HDLBP-238	ENST00000479894	NKX3-2	P78367	333 aa		18.69	■□□□□ 0.58
HDLBP-238	ENST00000479894	OTOP2	Q7RTS6	562 aa		18.69	■□□□□ 0.58
HDLBP-238	ENST00000479894	ZNF467	Q7Z7K2	595 aa	Predicted RBP	18.69	■□□□□ 0.58
HDLBP-238	ENST00000479894	RPUSD2	Q8IZ73	545 aa	Known RBP	18.69	■□□□□ 0.58
HDLBP-238	ENST00000479894	SPICE1	Q8N0Z3	855 aa		18.69	■□□□□ 0.58
HDLBP-238	ENST00000479894	KIF1BP	Q96EK5	621 aa		18.69	■□□□□ 0.58
HDLBP-238	ENST00000479894	RIOK1	Q9BRS2	568 aa	Known RBP	18.69	■□□□□ 0.58
HDLBP-238	ENST00000479894	HIPK3	Q9H422	1215 aa		18.69	■□□□□ 0.58
HDLBP-238	ENST00000479894	SWAP70	Q9UH65	585 aa		18.69	■□□□□ 0.58
HDLBP-238	ENST00000479894	ZHX1	Q9UKY1	873 aa	Predicted RBP	18.69	■□□□□ 0.58
HDLBP-238	ENST00000479894	SLC4A7	Q9Y6M7	1214 aa		18.69	■□□□□ 0.58
HDLBP-238	ENST00000479894	PI4K2B	G5E9Z4	385 aa		18.68	■□□□□ 0.58
HDLBP-238	ENST00000479894	VWA5A	O00534	786 aa		18.68	■□□□□ 0.58
HDLBP-238	ENST00000479894	SIAH1	Q8IUQ4	282 aa		18.68	■□□□□ 0.58
HDLBP-238	ENST00000479894	SLC43A3	Q8NBI5	491 aa		18.68	■□□□□ 0.58
HDLBP-238	ENST00000479894	SEZ6L	Q9BYH1	1024 aa		18.68	■□□□□ 0.58
HDLBP-238	ENST00000479894	RABGGTB	P53611	331 aa		18.67	■□□□□ 0.58
HDLBP-238	ENST00000479894	ICA1	Q05084	483 aa		18.67	■□□□□ 0.58
HDLBP-238	ENST00000479894	ACVR2B	Q13705	512 aa		18.67	■□□□□ 0.58

Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms