RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 PCDHA6Q9UN73 950 aa15.52■□□□□ 0.07
CLK3-203ENST00000454830 PCDHA8Q9Y5H6 950 aa15.52■□□□□ 0.07
CLK3-203ENST00000454830 DDTLA6NHG4 134 aaPredicted RBP15.52■□□□□ 0.07
CLK3-203ENST00000454830 ARID5BQ14865 1188 aa15.52■□□□□ 0.07
CLK3-203ENST00000454830 TNFRSF25Q93038 417 aa15.52■□□□□ 0.07
CLK3-203ENST00000454830 KCNF1Q9H3M0 494 aa15.52■□□□□ 0.07
CLK3-203ENST00000454830 SH3GLB2Q9NR46 395 aa15.52■□□□□ 0.07
CLK3-203ENST00000454830 SHMT1P34896 483 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 TRAPPC10P48553 1259 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 TNNI2P48788 182 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 ATP2C1P98194 919 aaPredicted RBP15.51■□□□□ 0.07
CLK3-203ENST00000454830 SHROOM1Q2M3G4 852 aaPredicted RBP15.51■□□□□ 0.07
CLK3-203ENST00000454830 CCDC144BQ3MJ40 725 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 SUPT20HQ8NEM7 779 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 UIMC1Q96RL1 719 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 TUBE1Q9UJT0 475 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 ECM29Q5VYK3 1845 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 NAV1Q8NEY1 1877 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 NONOQ15233 471 aaKnown RBP eCLIP15.51■□□□□ 0.075e-7■■□□□ 13.6
CLK3-203ENST00000454830 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.51■□□□□ 0.07
CLK3-203ENST00000454830 REXO1Q8N1G1 1221 aaKnown RBP15.51■□□□□ 0.07
CLK3-203ENST00000454830 OGFOD1Q8N543 542 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 IQUBQ8NA54 791 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 ZDHHC15Q96MV8 337 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 SPZ1Q9BXG8 430 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 A0A087X0B3 334 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 ZBTB22O15209 634 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 OFD1O75665 1012 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 ZBTB7AO95365 584 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 STAT6P42226 847 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 KARSQ15046 597 aaKnown RBP15.51■□□□□ 0.07
CLK3-203ENST00000454830 FANCLQ9NW38 375 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 PI4KBQ9UBF8 816 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 DACH1Q9UI36 760 aa15.51■□□□□ 0.07
CLK3-203ENST00000454830 ZBTB12Q9Y330 459 aaPredicted RBP15.51■□□□□ 0.07
CLK3-203ENST00000454830 ANKRD31Q8N7Z5 1873 aa15.5■□□□□ 0.07
CLK3-203ENST00000454830 SLC1A4P43007 532 aa15.5■□□□□ 0.07
CLK3-203ENST00000454830 UBASH3AP57075 661 aa15.5■□□□□ 0.07
CLK3-203ENST00000454830 SMYD4Q8IYR2 804 aaPredicted RBP15.5■□□□□ 0.07
CLK3-203ENST00000454830 KIAA1551Q9HCM1 1747 aa15.5■□□□□ 0.07
CLK3-203ENST00000454830 TMEM260Q9NX78 707 aa15.5■□□□□ 0.07
CLK3-203ENST00000454830 ATF5Q9Y2D1 282 aaPredicted RBP15.5■□□□□ 0.07
CLK3-203ENST00000454830 PP2D1A8MPX8 630 aa15.5■□□□□ 0.07
CLK3-203ENST00000454830 FANCCQ00597 558 aa15.5■□□□□ 0.07
CLK3-203ENST00000454830 LAMB1P07942 1786 aa15.5■□□□□ 0.07
CLK3-203ENST00000454830 MYH1P12882 1939 aa15.5■□□□□ 0.07
CLK3-203ENST00000454830 SEPT2Q15019 361 aa15.5■□□□□ 0.07
CLK3-203ENST00000454830 ASPRV1Q53RT3 343 aa15.5■□□□□ 0.07
CLK3-203ENST00000454830 MRFAP1L1Q96HT8 127 aa15.5■□□□□ 0.07
CLK3-203ENST00000454830 ACTN4O43707 911 aaKnown RBP15.49■□□□□ 0.07
CLK3-203ENST00000454830 SLFN14P0C7P3 912 aa15.49■□□□□ 0.07
CLK3-203ENST00000454830 DPEP1P16444 411 aa15.49■□□□□ 0.07
CLK3-203ENST00000454830 GABPAQ06546 454 aa15.49■□□□□ 0.07
CLK3-203ENST00000454830 CCDC93Q567U6 631 aa15.49■□□□□ 0.07
CLK3-203ENST00000454830 CACTINQ8WUQ7 758 aaKnown RBP15.49■□□□□ 0.07
CLK3-203ENST00000454830 PRMT6Q96LA8 375 aaPredicted RBP15.49■□□□□ 0.07
CLK3-203ENST00000454830 CSRNP1Q96S65 589 aa15.49■□□□□ 0.07
CLK3-203ENST00000454830 TMEM60Q9H2L4 133 aa15.49■□□□□ 0.07
CLK3-203ENST00000454830 COBLO75128 1261 aa15.49■□□□□ 0.07
CLK3-203ENST00000454830 KRT25Q7Z3Z0 450 aa15.49■□□□□ 0.07
CLK3-203ENST00000454830 PAGE5Q96GU1 130 aa15.49■□□□□ 0.07
CLK3-203ENST00000454830 FAM237AA0A1B0GTK4 181 aa15.49■□□□□ 0.07
CLK3-203ENST00000454830 ADCY7P51828 1080 aa15.49■□□□□ 0.07
CLK3-203ENST00000454830 ICA1Q05084 483 aa15.49■□□□□ 0.07
CLK3-203ENST00000454830 SARM1Q6SZW1 724 aa15.49■□□□□ 0.07
CLK3-203ENST00000454830 TBCKQ8TEA7 893 aa15.49■□□□□ 0.07
CLK3-203ENST00000454830 DHX36Q9H2U1 1008 aaKnown RBP15.49■□□□□ 0.07
CLK3-203ENST00000454830 MAPK8IP1Q9UQF2 711 aa15.49■□□□□ 0.07
CLK3-203ENST00000454830 NFE2L3Q9Y4A8 694 aa15.49■□□□□ 0.07
CLK3-203ENST00000454830 EEF2P13639 858 aaKnown RBP15.48■□□□□ 0.07
CLK3-203ENST00000454830 GALNT17Q6IS24 598 aa15.48■□□□□ 0.07
CLK3-203ENST00000454830 CCDC17Q96LX7 622 aa15.48■□□□□ 0.07
CLK3-203ENST00000454830 SNAP25P60880 206 aa15.48■□□□□ 0.07
CLK3-203ENST00000454830 DLGAP5Q15398 846 aa15.48■□□□□ 0.07
CLK3-203ENST00000454830 UBE2SQ16763 222 aa15.48■□□□□ 0.07
CLK3-203ENST00000454830 FAM198AQ9UFP1 575 aa15.48■□□□□ 0.07
CLK3-203ENST00000454830 USP17L10C9JJH3 530 aa15.48■□□□□ 0.07
CLK3-203ENST00000454830 TXKP42681 527 aa15.48■□□□□ 0.07
CLK3-203ENST00000454830 RBM26Q5T8P6 1007 aaKnown RBP15.48■□□□□ 0.07
CLK3-203ENST00000454830 RRAGBQ5VZM2 374 aa15.48■□□□□ 0.07
CLK3-203ENST00000454830 CC2D2BQ6DHV5 1058 aa15.48■□□□□ 0.07
CLK3-203ENST00000454830 ADGRF4Q8IZF3 695 aa15.48■□□□□ 0.07
CLK3-203ENST00000454830 HDAC9Q9UKV0 1011 aa15.48■□□□□ 0.07
CLK3-203ENST00000454830 NRDCO43847 1150 aa15.47■□□□□ 0.07
CLK3-203ENST00000454830 ABCB5Q2M3G0 1257 aa15.47■□□□□ 0.07
CLK3-203ENST00000454830 SLFN13Q68D06 897 aa15.47■□□□□ 0.07
CLK3-203ENST00000454830 NEK8Q86SG6 692 aa15.47■□□□□ 0.07
CLK3-203ENST00000454830 SPICE1Q8N0Z3 855 aa15.47■□□□□ 0.07
CLK3-203ENST00000454830 NUP88Q99567 741 aaPredicted RBP15.47■□□□□ 0.07
CLK3-203ENST00000454830 SCAF8Q9UPN6 1271 aaKnown RBP15.47■□□□□ 0.07
CLK3-203ENST00000454830 NEMFO60524 1076 aa15.47■□□□□ 0.07
CLK3-203ENST00000454830 ZNF543Q08ER8 600 aa15.47■□□□□ 0.07
CLK3-203ENST00000454830 MLKLQ8NB16 471 aa15.47■□□□□ 0.07
CLK3-203ENST00000454830 ZNF592Q92610 1267 aa15.47■□□□□ 0.07
CLK3-203ENST00000454830 YDJCA8MPS7 323 aa15.47■□□□□ 0.07
CLK3-203ENST00000454830 SKILP12757 684 aa15.47■□□□□ 0.07
CLK3-203ENST00000454830 BMP6P22004 513 aa15.47■□□□□ 0.07
CLK3-203ENST00000454830 C16orf45Q96MC5 204 aaPredicted RBP15.47■□□□□ 0.07
CLK3-203ENST00000454830 ZMYND12Q9H0C1 365 aa15.47■□□□□ 0.07
CLK3-203ENST00000454830 TRMT1Q9NXH9 659 aaKnown RBP15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms