RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 TACC3Q9Y6A5 838 aa13.22□□□□□ -0.29
RFFL-204ENST00000414419 PLXNA1Q9UIW2 1896 aa13.22□□□□□ -0.29
RFFL-204ENST00000414419 ZNF236Q9UL36 1845 aa13.21□□□□□ -0.29
RFFL-204ENST00000414419 HOXC6P09630 235 aa13.21□□□□□ -0.29
RFFL-204ENST00000414419 FDX1P10109 184 aa13.21□□□□□ -0.29
RFFL-204ENST00000414419 TOP1P11387 765 aaKnown RBP13.21□□□□□ -0.29
RFFL-204ENST00000414419 NT5C2P49902 561 aa13.21□□□□□ -0.29
RFFL-204ENST00000414419 STAT2P52630 851 aa13.21□□□□□ -0.29
RFFL-204ENST00000414419 CACNB2Q08289 660 aaPredicted RBP13.21□□□□□ -0.29
RFFL-204ENST00000414419 KCTD2Q14681 263 aa13.21□□□□□ -0.29
RFFL-204ENST00000414419 SNRNP48Q6IEG0 339 aaKnown RBP13.21□□□□□ -0.29
RFFL-204ENST00000414419 RCSD1Q6JBY9 416 aa13.21□□□□□ -0.29
RFFL-204ENST00000414419 FAM160B2Q86V87 743 aa13.21□□□□□ -0.29
RFFL-204ENST00000414419 NPLOC4Q8TAT6 608 aa13.21□□□□□ -0.29
RFFL-204ENST00000414419 SHISA4Q96DD7 197 aa13.21□□□□□ -0.29
RFFL-204ENST00000414419 GMCL1Q96IK5 515 aa13.21□□□□□ -0.29
RFFL-204ENST00000414419 MMP19Q99542 508 aa13.21□□□□□ -0.29
RFFL-204ENST00000414419 ZNF214Q9UL59 606 aaPredicted RBP13.21□□□□□ -0.29
RFFL-204ENST00000414419 FARP2O94887 1054 aaPredicted RBP13.2□□□□□ -0.3
RFFL-204ENST00000414419 NEFLP07196 543 aa13.2□□□□□ -0.3
RFFL-204ENST00000414419 CHMLP26374 656 aa13.2□□□□□ -0.3
RFFL-204ENST00000414419 CNGA1P29973 690 aa13.2□□□□□ -0.3
RFFL-204ENST00000414419 CCDC96Q2M329 555 aa13.2□□□□□ -0.3
RFFL-204ENST00000414419 CCDC178Q5BJE1 867 aa13.2□□□□□ -0.3
RFFL-204ENST00000414419 MAP3K21Q5TCX8 1036 aa13.2□□□□□ -0.3
RFFL-204ENST00000414419 KCTD1Q719H9 257 aa13.2□□□□□ -0.3
RFFL-204ENST00000414419 IQCA1Q86XH1 822 aa13.2□□□□□ -0.3
RFFL-204ENST00000414419 TBC1D10CQ8IV04 446 aa13.2□□□□□ -0.3
RFFL-204ENST00000414419 REPS2Q8NFH8 660 aa13.2□□□□□ -0.3
RFFL-204ENST00000414419 TTC14Q96N46 770 aa13.2□□□□□ -0.3
RFFL-204ENST00000414419 KRT23Q9C075 422 aa13.2□□□□□ -0.3
RFFL-204ENST00000414419 NBPF3Q9H094 633 aa13.2□□□□□ -0.3
RFFL-204ENST00000414419 SLC38A10Q9HBR0 1119 aa13.2□□□□□ -0.3
RFFL-204ENST00000414419 FLRT1Q9NZU1 646 aa13.2□□□□□ -0.3
RFFL-204ENST00000414419 PRPF38BQ5VTL8 546 aaKnown RBP13.19□□□□□ -0.3
RFFL-204ENST00000414419 OLFML2BQ68BL8 750 aa13.19□□□□□ -0.3
RFFL-204ENST00000414419 DCAF4Q8WV16 495 aa13.19□□□□□ -0.3
RFFL-204ENST00000414419 DPF3Q92784 378 aa13.19□□□□□ -0.3
RFFL-204ENST00000414419 DDX11Q96FC9 970 aa13.19□□□□□ -0.3
RFFL-204ENST00000414419 CCDC136Q96JN2 1154 aa13.19□□□□□ -0.3
RFFL-204ENST00000414419 TMEM47Q9BQJ4 181 aa13.19□□□□□ -0.3
RFFL-204ENST00000414419 HTATIP2Q9BUP3 242 aa13.19□□□□□ -0.3
RFFL-204ENST00000414419 CRISPLD2Q9H0B8 497 aa13.19□□□□□ -0.3
RFFL-204ENST00000414419 CNNM2Q9H8M5 875 aa13.19□□□□□ -0.3
RFFL-204ENST00000414419 RAVER2Q9HCJ3 691 aaKnown RBP13.19□□□□□ -0.3
RFFL-204ENST00000414419 MKI67P46013 3256 aaKnown RBP13.19□□□□□ -0.3
RFFL-204ENST00000414419 NEDD4P46934 1319 aa13.18□□□□□ -0.3
RFFL-204ENST00000414419 B4E1Z4 1266 aa13.18□□□□□ -0.3
RFFL-204ENST00000414419 ATP2A1O14983 1001 aa13.18□□□□□ -0.3
RFFL-204ENST00000414419 PLA2G6O60733 806 aa13.18□□□□□ -0.3
RFFL-204ENST00000414419 COBLO75128 1261 aa13.18□□□□□ -0.3
RFFL-204ENST00000414419 KDM4AO75164 1064 aa13.18□□□□□ -0.3
RFFL-204ENST00000414419 CCND3P30281 292 aaPredicted RBP13.18□□□□□ -0.3
RFFL-204ENST00000414419 CYP2C19P33261 490 aa13.18□□□□□ -0.3
RFFL-204ENST00000414419 NOVP48745 357 aa13.18□□□□□ -0.3
RFFL-204ENST00000414419 OAZ1P54368 228 aa13.18□□□□□ -0.3
RFFL-204ENST00000414419 TRDNQ13061 729 aa13.18□□□□□ -0.3
RFFL-204ENST00000414419 KIAA1211Q6ZU35 1233 aa13.18□□□□□ -0.3
RFFL-204ENST00000414419 ANKLE1Q8NAG6 615 aa13.18□□□□□ -0.3
RFFL-204ENST00000414419 ZKSCAN3Q9BRR0 538 aa13.18□□□□□ -0.3
RFFL-204ENST00000414419 FBXO40Q9UH90 709 aa13.18□□□□□ -0.3
RFFL-204ENST00000414419 SMCHD1A6NHR9 2005 aa13.17□□□□□ -0.3
RFFL-204ENST00000414419 MSCO60682 206 aa13.17□□□□□ -0.3
RFFL-204ENST00000414419 PGK2P07205 417 aa13.17□□□□□ -0.3
RFFL-204ENST00000414419 NECAB2Q7Z6G3 386 aa13.17□□□□□ -0.3
RFFL-204ENST00000414419 DGKHQ86XP1 1220 aa13.17□□□□□ -0.3
RFFL-204ENST00000414419 ANKRD35Q8N283 1001 aa13.17□□□□□ -0.3
RFFL-204ENST00000414419 CHST13Q8NET6 341 aa13.17□□□□□ -0.3
RFFL-204ENST00000414419 MAML3Q96JK9 1138 aa13.17□□□□□ -0.3
RFFL-204ENST00000414419 UBAC1Q9BSL1 405 aa13.17□□□□□ -0.3
RFFL-204ENST00000414419 IL25Q9H293 177 aa13.17□□□□□ -0.3
RFFL-204ENST00000414419 ZSWIM5Q9P217 1185 aa13.17□□□□□ -0.3
RFFL-204ENST00000414419 DIS3Q9Y2L1 958 aaKnown RBP13.17□□□□□ -0.3
RFFL-204ENST00000414419 RIPK3Q9Y572 518 aa13.17□□□□□ -0.3
RFFL-204ENST00000414419 U3KPZ7 1027 aaPredicted RBP13.17□□□□□ -0.3
RFFL-204ENST00000414419 SGSM2O43147 1006 aa13.16□□□□□ -0.3
RFFL-204ENST00000414419 CCDC174Q6PII3 467 aa13.16□□□□□ -0.3
RFFL-204ENST00000414419 PAWRQ96IZ0 340 aaKnown RBP13.16□□□□□ -0.3
RFFL-204ENST00000414419 ZSCAN10Q96SZ4 725 aaPredicted RBP13.16□□□□□ -0.3
RFFL-204ENST00000414419 KAT14Q9H8E8 782 aa13.16□□□□□ -0.3
RFFL-204ENST00000414419 GPCPD1Q9NPB8 672 aa13.16□□□□□ -0.3
RFFL-204ENST00000414419 HOMER2Q9NSB8 354 aa13.16□□□□□ -0.3
RFFL-204ENST00000414419 OGDHLQ9ULD0 1010 aa13.16□□□□□ -0.3
RFFL-204ENST00000414419 PRR12Q9ULL5 1215 aa13.16□□□□□ -0.3
RFFL-204ENST00000414419 FRMPD3Q5JV73 1810 aa13.16□□□□□ -0.3
RFFL-204ENST00000414419 FRMPD2Q68DX3 1309 aaPredicted RBP13.15□□□□□ -0.3
RFFL-204ENST00000414419 MYH6P13533 1939 aa13.15□□□□□ -0.3
RFFL-204ENST00000414419 PDHBP11177 359 aa13.15□□□□□ -0.3
RFFL-204ENST00000414419 ALAS1P13196 640 aa13.15□□□□□ -0.3
RFFL-204ENST00000414419 SLC16A2P36021 539 aa13.15□□□□□ -0.3
RFFL-204ENST00000414419 PTH1RQ03431 593 aa13.15□□□□□ -0.3
RFFL-204ENST00000414419 ZNF792Q3KQV3 632 aa13.15□□□□□ -0.3
RFFL-204ENST00000414419 TKFCQ3LXA3 575 aa13.15□□□□□ -0.3
RFFL-204ENST00000414419 SYDE2Q5VT97 1194 aa13.15□□□□□ -0.3
RFFL-204ENST00000414419 RASGRP2Q7LDG7 609 aa13.15□□□□□ -0.3
RFFL-204ENST00000414419 UBE2Q1Q7Z7E8 422 aa13.15□□□□□ -0.3
RFFL-204ENST00000414419 TINF2Q9BSI4 451 aa13.15□□□□□ -0.3
RFFL-204ENST00000414419 ACAD9Q9H845 621 aa13.15□□□□□ -0.3
RFFL-204ENST00000414419 DDX20Q9UHI6 824 aaKnown RBP13.15□□□□□ -0.3
RFFL-204ENST00000414419 MCM3APO60318 1980 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms