RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 FGFR1OPO95684 399 aaKnown RBP18.04■□□□□ 0.48
PCDH1-203ENST00000394536 CYP2C19P33261 490 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 IL6STP40189 918 aaPredicted RBP18.04■□□□□ 0.48
PCDH1-203ENST00000394536 PRCPP42785 496 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 TUBB2AQ13885 445 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 TTC19Q6DKK2 380 aaPredicted RBP18.04■□□□□ 0.48
PCDH1-203ENST00000394536 BRINP3Q76B58 766 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 RRAGAQ7L523 313 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 ZSCAN29Q8IWY8 852 aaPredicted RBP18.04■□□□□ 0.48
PCDH1-203ENST00000394536 NKX2-3Q8TAU0 364 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 ATRIPQ8WXE1 791 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 TUBB2BQ9BVA1 445 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 HAUS4Q9H6D7 363 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 ABHD10Q9NUJ1 306 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 A0A1B0GTH6 734 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 C6orf229H3BNL8 230 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 TBC1D8O95759 1140 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 TUBBP07437 444 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 USP17L8P0C7I0 530 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 TCP11X2Q5H9J9 407 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 RNF187Q5TA31 235 aaPredicted RBP18.04■□□□□ 0.48
PCDH1-203ENST00000394536 SMIM5Q71RC9 77 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 TRMT1LQ7Z2T5 733 aaKnown RBP18.04■□□□□ 0.48
PCDH1-203ENST00000394536 DYNLL2Q96FJ2 89 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 NBPF3Q9H094 633 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 TRAF5O00463 557 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 MAGEA1P43355 309 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 VSNL1P62760 191 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 FAM76AQ8TAV0 307 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 ADD3Q9UEY8 706 aaKnown RBP18.04■□□□□ 0.48
PCDH1-203ENST00000394536 CYP19A1P11511 503 aaPredicted RBP18.03■□□□□ 0.48
PCDH1-203ENST00000394536 IFIH1Q9BYX4 1025 aaKnown RBP18.03■□□□□ 0.48
PCDH1-203ENST00000394536 INTS13Q9NVM9 706 aa18.03■□□□□ 0.48
PCDH1-203ENST00000394536 BIN2Q9UBW5 565 aaPredicted RBP18.03■□□□□ 0.48
PCDH1-203ENST00000394536 TTC26A0AVF1 554 aa18.03■□□□□ 0.48
PCDH1-203ENST00000394536 FOXP2O15409 715 aa18.03■□□□□ 0.48
PCDH1-203ENST00000394536 GSPT2Q8IYD1 628 aaKnown RBP18.03■□□□□ 0.48
PCDH1-203ENST00000394536 CEP89Q96ST8 783 aa18.03■□□□□ 0.48
PCDH1-203ENST00000394536 HSF2BPO75031 334 aa18.03■□□□□ 0.48
PCDH1-203ENST00000394536 RPS8P62241 208 aaKnown RBP18.03■□□□□ 0.48
PCDH1-203ENST00000394536 GOLGA6CA6NDK9 693 aa18.02■□□□□ 0.48
PCDH1-203ENST00000394536 GOLGA6BA6NDN3 693 aa18.02■□□□□ 0.48
PCDH1-203ENST00000394536 GOLGA6DP0CG33 693 aa18.02■□□□□ 0.48
PCDH1-203ENST00000394536 DNM2P50570 870 aa18.02■□□□□ 0.48
PCDH1-203ENST00000394536 ZNF658Q5TYW1 1059 aaPredicted RBP18.02■□□□□ 0.48
PCDH1-203ENST00000394536 AEBP2Q6ZN18 517 aaPredicted RBP18.02■□□□□ 0.48
PCDH1-203ENST00000394536 SV2BQ7L1I2 683 aa18.02■□□□□ 0.48
PCDH1-203ENST00000394536 GOLGA6AQ9NYA3 693 aa18.02■□□□□ 0.48
PCDH1-203ENST00000394536 AKAP12Q02952 1782 aa18.02■□□□□ 0.48
PCDH1-203ENST00000394536 PIK3C2AO00443 1686 aa18.02■□□□□ 0.48
PCDH1-203ENST00000394536 ACTN2P35609 894 aa18.02■□□□□ 0.48
PCDH1-203ENST00000394536 SPAG5Q96R06 1193 aa18.02■□□□□ 0.48
PCDH1-203ENST00000394536 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.02■□□□□ 0.48
PCDH1-203ENST00000394536 PRPF4BQ13523 1007 aaKnown RBP18.02■□□□□ 0.47
PCDH1-203ENST00000394536 EARS2Q5JPH6 523 aaKnown RBP18.02■□□□□ 0.47
PCDH1-203ENST00000394536 KRT79Q5XKE5 535 aa18.02■□□□□ 0.47
PCDH1-203ENST00000394536 RRP36Q96EU6 259 aaKnown RBP18.02■□□□□ 0.47
PCDH1-203ENST00000394536 BUB1O43683 1085 aa18.01■□□□□ 0.47
PCDH1-203ENST00000394536 N4BP1O75113 896 aaKnown RBP18.01■□□□□ 0.47
PCDH1-203ENST00000394536 GYPCP04921 128 aa18.01■□□□□ 0.47
PCDH1-203ENST00000394536 LDHCP07864 332 aa18.01■□□□□ 0.47
PCDH1-203ENST00000394536 CCDC93Q567U6 631 aa18.01■□□□□ 0.47
PCDH1-203ENST00000394536 GPCPD1Q9NPB8 672 aa18.01■□□□□ 0.47
PCDH1-203ENST00000394536 RWDD2AQ9UIY3 292 aa18.01■□□□□ 0.47
PCDH1-203ENST00000394536 LOC102724428A0A0B4J2F2 783 aa18.01■□□□□ 0.47
PCDH1-203ENST00000394536 USP17L3A6NCW0 530 aa18.01■□□□□ 0.47
PCDH1-203ENST00000394536 USP17L4A6NCW7 530 aa18.01■□□□□ 0.47
PCDH1-203ENST00000394536 SMCO2A6NFE2 343 aa18.01■□□□□ 0.47
PCDH1-203ENST00000394536 EBAG9O00559 213 aa18.01■□□□□ 0.47
PCDH1-203ENST00000394536 SASH3O75995 380 aa18.01■□□□□ 0.47
PCDH1-203ENST00000394536 GNA11P29992 359 aa18.01■□□□□ 0.47
PCDH1-203ENST00000394536 PRDX5P30044 214 aa18.01■□□□□ 0.47
PCDH1-203ENST00000394536 SIK1P57059 783 aa18.01■□□□□ 0.47
PCDH1-203ENST00000394536 TMTC3Q6ZXV5 915 aa18.01■□□□□ 0.47
PCDH1-203ENST00000394536 USP17L1Q7RTZ2 530 aa18.01■□□□□ 0.47
PCDH1-203ENST00000394536 LRWD1Q9UFC0 647 aa18.01■□□□□ 0.47
PCDH1-203ENST00000394536 RBM5P52756 815 aaKnown RBP eCLIP18.01■□□□□ 0.47
PCDH1-203ENST00000394536 NELFCDQ8IXH7 590 aa18.01■□□□□ 0.47
PCDH1-203ENST00000394536 NOA1Q8NC60 698 aaKnown RBP18.01■□□□□ 0.47
PCDH1-203ENST00000394536 SRBD1Q8N5C6 995 aaKnown RBP18■□□□□ 0.47
PCDH1-203ENST00000394536 GOLGA5Q8TBA6 731 aa18■□□□□ 0.47
PCDH1-203ENST00000394536 CACNA1FO60840 1977 aa18■□□□□ 0.47
PCDH1-203ENST00000394536 KLRF2D3W0D1 207 aa18■□□□□ 0.47
PCDH1-203ENST00000394536 RNF40O75150 1001 aa18■□□□□ 0.47
PCDH1-203ENST00000394536 NONOQ15233 471 aaKnown RBP eCLIP18■□□□□ 0.47
PCDH1-203ENST00000394536 ERFEQ4G0M1 354 aa18■□□□□ 0.47
PCDH1-203ENST00000394536 EXOC4Q96A65 974 aa18■□□□□ 0.47
PCDH1-203ENST00000394536 CNOT6LQ96LI5 555 aaKnown RBP18■□□□□ 0.47
PCDH1-203ENST00000394536 PLA2G12BQ9BX93 195 aa18■□□□□ 0.47
PCDH1-203ENST00000394536 IRX5P78411 483 aaPredicted RBP18■□□□□ 0.47
PCDH1-203ENST00000394536 RAPGEF1Q13905 1077 aa18■□□□□ 0.47
PCDH1-203ENST00000394536 CDHR2Q9BYE9 1310 aa17.99■□□□□ 0.47
PCDH1-203ENST00000394536 LONP1P36776 959 aaKnown RBP17.99■□□□□ 0.47
PCDH1-203ENST00000394536 VAV2P52735 878 aa17.99■□□□□ 0.47
PCDH1-203ENST00000394536 FBXL16Q8N461 479 aa17.99■□□□□ 0.47
PCDH1-203ENST00000394536 ABCC12Q96J65 1359 aa17.99■□□□□ 0.47
PCDH1-203ENST00000394536 RGPD8O14715 1765 aaPredicted RBP17.99■□□□□ 0.47
PCDH1-203ENST00000394536 ATP2C2O75185 946 aa17.99■□□□□ 0.47
PCDH1-203ENST00000394536 DDAH1O94760 285 aa17.99■□□□□ 0.47
PCDH1-203ENST00000394536 SLC7A5Q01650 507 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms