RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 L2HGDHQ9H9P8 463 aa23.6■■□□□ 1.37
CCDC88B-203ENST00000359902 GAKO14976 1311 aa23.59■■□□□ 1.37
CCDC88B-203ENST00000359902 TEX33O43247 280 aa23.59■■□□□ 1.37
CCDC88B-203ENST00000359902 ETF1P62495 437 aaKnown RBP23.59■■□□□ 1.37
CCDC88B-203ENST00000359902 HOMER1Q86YM7 354 aa23.59■■□□□ 1.37
CCDC88B-203ENST00000359902 SPZ1Q9BXG8 430 aa23.59■■□□□ 1.37
CCDC88B-203ENST00000359902 DDX60LQ5H9U9 1706 aaKnown RBP23.59■■□□□ 1.37
CCDC88B-203ENST00000359902 STX10O60499 249 aa23.59■■□□□ 1.37
CCDC88B-203ENST00000359902 INF2Q27J81 1249 aa23.59■■□□□ 1.37
CCDC88B-203ENST00000359902 TRIM65Q6PJ69 517 aa23.59■■□□□ 1.37
CCDC88B-203ENST00000359902 SLF2Q8IX21 1173 aa23.59■■□□□ 1.37
CCDC88B-203ENST00000359902 TBC1D22AQ8WUA7 517 aa23.59■■□□□ 1.37
CCDC88B-203ENST00000359902 TMEM60Q9H2L4 133 aa23.59■■□□□ 1.37
CCDC88B-203ENST00000359902 CPVLQ9H3G5 476 aa23.59■■□□□ 1.37
CCDC88B-203ENST00000359902 ADD3Q9UEY8 706 aaKnown RBP23.59■■□□□ 1.37
CCDC88B-203ENST00000359902 TXLNAP40222 546 aa23.58■■□□□ 1.37
CCDC88B-203ENST00000359902 SLC27A3Q5K4L6 730 aa23.58■■□□□ 1.37
CCDC88B-203ENST00000359902 DTHD1Q6ZMT9 781 aa23.58■■□□□ 1.37
CCDC88B-203ENST00000359902 FAM177A1Q8N128 213 aaPredicted RBP23.58■■□□□ 1.37
CCDC88B-203ENST00000359902 TRPC5Q9UL62 973 aaPredicted RBP23.58■■□□□ 1.37
CCDC88B-203ENST00000359902 KLRG2A4D1S0 409 aaPredicted RBP23.58■■□□□ 1.36
CCDC88B-203ENST00000359902 C6orf229H3BNL8 230 aa23.58■■□□□ 1.36
CCDC88B-203ENST00000359902 POLRMTO00411 1230 aaKnown RBP23.58■■□□□ 1.36
CCDC88B-203ENST00000359902 SLU7O95391 586 aaKnown RBP23.58■■□□□ 1.36
CCDC88B-203ENST00000359902 KARSQ15046 597 aaKnown RBP23.58■■□□□ 1.36
CCDC88B-203ENST00000359902 ERO1AQ96HE7 468 aa23.58■■□□□ 1.36
CCDC88B-203ENST00000359902 CTNND2Q9UQB3 1225 aa23.58■■□□□ 1.36
CCDC88B-203ENST00000359902 ZSCAN12O43309 604 aa23.57■■□□□ 1.36
CCDC88B-203ENST00000359902 PARP1P09874 1014 aaKnown RBP23.57■■□□□ 1.36
CCDC88B-203ENST00000359902 CCDC93Q567U6 631 aa23.57■■□□□ 1.36
CCDC88B-203ENST00000359902 RRAGBQ5VZM2 374 aa23.57■■□□□ 1.36
CCDC88B-203ENST00000359902 ZMYND12Q9H0C1 365 aa23.57■■□□□ 1.36
CCDC88B-203ENST00000359902 PPP2R2CQ9Y2T4 447 aa23.57■■□□□ 1.36
CCDC88B-203ENST00000359902 PBX1P40424 430 aa23.56■■□□□ 1.36
CCDC88B-203ENST00000359902 USP17L2Q6R6M4 530 aa23.56■■□□□ 1.36
CCDC88B-203ENST00000359902 CEP95Q96GE4 821 aa23.56■■□□□ 1.36
CCDC88B-203ENST00000359902 CTAGE1Q96RT6 745 aa23.56■■□□□ 1.36
CCDC88B-203ENST00000359902 RPN1P04843 607 aaKnown RBP23.56■■□□□ 1.36
CCDC88B-203ENST00000359902 STAT6P42226 847 aa23.56■■□□□ 1.36
CCDC88B-203ENST00000359902 NOVP48745 357 aa23.56■■□□□ 1.36
CCDC88B-203ENST00000359902 DISC1Q9NRI5 854 aa23.56■■□□□ 1.36
CCDC88B-203ENST00000359902 NAALADL2Q58DX5 795 aa23.55■■□□□ 1.36
CCDC88B-203ENST00000359902 ZNF658Q5TYW1 1059 aaPredicted RBP23.55■■□□□ 1.36
CCDC88B-203ENST00000359902 RWDD2AQ9UIY3 292 aa23.55■■□□□ 1.36
CCDC88B-203ENST00000359902 PHLPP2Q6ZVD8 1323 aa23.55■■□□□ 1.36
CCDC88B-203ENST00000359902 COBLO75128 1261 aa23.55■■□□□ 1.36
CCDC88B-203ENST00000359902 RMND1Q9NWS8 449 aa23.55■■□□□ 1.36
CCDC88B-203ENST00000359902 DNAI1Q9UI46 699 aa23.55■■□□□ 1.36
CCDC88B-203ENST00000359902 PP2D1A8MPX8 630 aa23.54■■□□□ 1.36
CCDC88B-203ENST00000359902 AKR1B15C9JRZ8 316 aaPredicted RBP23.54■■□□□ 1.36
CCDC88B-203ENST00000359902 NAPAP54920 295 aa23.54■■□□□ 1.36
CCDC88B-203ENST00000359902 GTF2IP78347 998 aa23.54■■□□□ 1.36
CCDC88B-203ENST00000359902 DAGLAQ9Y4D2 1042 aa23.54■■□□□ 1.36
CCDC88B-203ENST00000359902 MYH1P12882 1939 aa23.54■■□□□ 1.36
CCDC88B-203ENST00000359902 LAD1O00515 517 aa23.54■■□□□ 1.36
CCDC88B-203ENST00000359902 SMARCA1P28370 1054 aa23.54■■□□□ 1.36
CCDC88B-203ENST00000359902 SP8Q8IXZ3 490 aa23.54■■□□□ 1.36
CCDC88B-203ENST00000359902 NOL12Q9UGY1 213 aaKnown RBP eCLIP23.54■■□□□ 1.36
CCDC88B-203ENST00000359902 V9GYY5 206 aaPredicted RBP23.54■■□□□ 1.36
CCDC88B-203ENST00000359902 PRPHP41219 470 aa23.53■■□□□ 1.36
CCDC88B-203ENST00000359902 TOGARAM2Q6ZUX3 1019 aa23.53■■□□□ 1.36
CCDC88B-203ENST00000359902 IGSF22Q8N9C0 903 aa23.53■■□□□ 1.36
CCDC88B-203ENST00000359902 CCDC12Q8WUD4 166 aaPredicted RBP23.53■■□□□ 1.36
CCDC88B-203ENST00000359902 RRP36Q96EU6 259 aaKnown RBP23.53■■□□□ 1.36
CCDC88B-203ENST00000359902 PANX2Q96RD6 677 aa23.53■■□□□ 1.36
CCDC88B-203ENST00000359902 CCSER1Q9C0I3 900 aa23.53■■□□□ 1.36
CCDC88B-203ENST00000359902 CGNQ9P2M7 1197 aaKnown RBP23.53■■□□□ 1.36
CCDC88B-203ENST00000359902 SMCO2A6NFE2 343 aa23.53■■□□□ 1.36
CCDC88B-203ENST00000359902 LRRC10BA6NIK2 292 aa23.53■■□□□ 1.36
CCDC88B-203ENST00000359902 FANCGO15287 622 aa23.53■■□□□ 1.36
CCDC88B-203ENST00000359902 PAK1Q13153 545 aa23.53■■□□□ 1.36
CCDC88B-203ENST00000359902 FILIP1LQ4L180 1135 aa23.53■■□□□ 1.36
CCDC88B-203ENST00000359902 LTBP1Q14766 1721 aa23.52■■□□□ 1.36
CCDC88B-203ENST00000359902 UBA7P41226 1012 aa23.52■■□□□ 1.36
CCDC88B-203ENST00000359902 RBL2Q08999 1139 aa23.52■■□□□ 1.36
CCDC88B-203ENST00000359902 KRT25Q7Z3Z0 450 aa23.52■■□□□ 1.36
CCDC88B-203ENST00000359902 NELFBQ8WX92 580 aa23.52■■□□□ 1.36
CCDC88B-203ENST00000359902 LIMA1Q9UHB6 759 aaKnown RBP23.52■■□□□ 1.36
CCDC88B-203ENST00000359902 PPEF1O14829 653 aaPredicted RBP23.51■■□□□ 1.35
CCDC88B-203ENST00000359902 TMC4Q7Z404 712 aa23.51■■□□□ 1.35
CCDC88B-203ENST00000359902 VAT1LQ9HCJ6 419 aa23.51■■□□□ 1.35
CCDC88B-203ENST00000359902 C6orf50Q9HD87 102 aa23.51■■□□□ 1.35
CCDC88B-203ENST00000359902 GDAQ9Y2T3 454 aa23.51■■□□□ 1.35
CCDC88B-203ENST00000359902 EP400Q96L91 3159 aa23.51■■□□□ 1.35
CCDC88B-203ENST00000359902 USP17L5A8MUK1 530 aa23.51■■□□□ 1.35
CCDC88B-203ENST00000359902 RIMBP2O15034 1052 aa23.51■■□□□ 1.35
CCDC88B-203ENST00000359902 PRCPP42785 496 aa23.51■■□□□ 1.35
CCDC88B-203ENST00000359902 PPFIBP1Q86W92 1011 aa23.51■■□□□ 1.35
CCDC88B-203ENST00000359902 GNA11P29992 359 aa23.5■■□□□ 1.35
CCDC88B-203ENST00000359902 KRT31Q15323 416 aa23.5■■□□□ 1.35
CCDC88B-203ENST00000359902 PIGSQ96S52 555 aa23.5■■□□□ 1.35
CCDC88B-203ENST00000359902 SEC63Q9UGP8 760 aaKnown RBP23.5■■□□□ 1.35
CCDC88B-203ENST00000359902 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.5■■□□□ 1.351e-6■■□□□ 13.9
CCDC88B-203ENST00000359902 LRRC37AA6NMS7 1700 aa23.5■■□□□ 1.35
CCDC88B-203ENST00000359902 GOLGA6L9A6NEM1 432 aa23.5■■□□□ 1.35
CCDC88B-203ENST00000359902 TRIM37O94972 964 aa23.5■■□□□ 1.35
CCDC88B-203ENST00000359902 NONOQ15233 471 aaKnown RBP eCLIP23.5■■□□□ 1.35
CCDC88B-203ENST00000359902 COA1Q9GZY4 146 aa23.5■■□□□ 1.35
CCDC88B-203ENST00000359902 KBTBD4Q9NVX7 518 aa23.5■■□□□ 1.35
CCDC88B-203ENST00000359902 MAPK8IP1Q9UQF2 711 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms