RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 PIF1Q9H611 641 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 NAGPAQ9UK23 515 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 MAP3K2Q9Y2U5 619 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 ABCC12Q96J65 1359 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 J3QW42 95 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 FRAT2O75474 233 aaPredicted RBP2.86□□□□□ -1.95
VPS54-202ENST00000354504 PROCP04070 461 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 USP5P45974 858 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 RGS3P49796 1198 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 PTH1RQ03431 593 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 ITPK1Q13572 414 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 HGSNATQ68CP4 663 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 ZNF530Q6P9A1 599 aaPredicted RBP2.86□□□□□ -1.95
VPS54-202ENST00000354504 ZNF438Q7Z4V0 828 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 ZNF34Q8IZ26 560 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 FBXL16Q8N461 479 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 FBF1Q8TES7 1133 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 CHAMP1Q96JM3 812 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 BCO2Q9BYV7 579 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 NFKBIEO00221 500 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 IPO8O15397 1037 aaKnown RBP2.86□□□□□ -1.95
VPS54-202ENST00000354504 SGSM2O43147 1006 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 EFSO43281 561 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 CELA3AP09093 270 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 USP17L7P0C7H9 530 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 TM4SF1P30408 202 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 ATP11AP98196 1134 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 FAAP100Q0VG06 881 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 HLFQ16534 295 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 GAS2L3Q86XJ1 694 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 SYNE4Q8N205 404 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 ACDQ96AP0 544 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 C22orf23Q9BZE7 217 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 GSX2Q9BZM3 304 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 ABCB6Q9NP58 842 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 TIMMDC1Q9NPL8 285 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 ANKIB1Q9P2G1 1089 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 KLF15Q9UIH9 416 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 DBNLQ9UJU6 430 aaKnown RBP2.86□□□□□ -1.95
VPS54-202ENST00000354504 MKL2Q9ULH7 1088 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 PA2G4Q9UQ80 394 aaKnown RBP2.86□□□□□ -1.95
VPS54-202ENST00000354504 EXOC6BQ9Y2D4 811 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 RAD50Q92878 1312 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 CDHR2Q9BYE9 1310 aa2.86□□□□□ -1.95
VPS54-202ENST00000354504 KAT6BQ8WYB5 2073 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 WTIPA6NIX2 430 aaPredicted RBP2.85□□□□□ -1.95
VPS54-202ENST00000354504 PIP4K2AP48426 406 aaPredicted RBP2.85□□□□□ -1.95
VPS54-202ENST00000354504 CDK8P49336 464 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 ADCK5Q3MIX3 580 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 STOX1Q6ZVD7 989 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 ZNF589Q86UQ0 364 aaPredicted RBP2.85□□□□□ -1.95
VPS54-202ENST00000354504 LINS1Q8NG48 757 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 KLHDC4Q8TBB5 520 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 CEP63Q96MT8 703 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 ZKSCAN3Q9BRR0 538 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 ZFYVE28Q9HCC9 887 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 KBTBD4Q9NVX7 518 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 DBF4Q9UBU7 674 aaPredicted RBP2.85□□□□□ -1.95
VPS54-202ENST00000354504 ASAP1Q9ULH1 1129 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 AK5Q9Y6K8 562 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 SCAMP3O14828 347 aaKnown RBP2.85□□□□□ -1.95
VPS54-202ENST00000354504 ECEL1O95672 775 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 GNAI2P04899 355 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 SELPP16109 830 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 EVCP57679 992 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 TOB2Q14106 344 aaPredicted RBP2.85□□□□□ -1.95
VPS54-202ENST00000354504 MAP3K11Q16584 847 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 SPRED3Q2MJR0 410 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 PLEKHO1Q53GL0 409 aaPredicted RBP2.85□□□□□ -1.95
VPS54-202ENST00000354504 PODNQ7Z5L7 613 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 IFNL2Q8IZJ0 200 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 VWA5B2Q8N398 1253 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 STK35Q8TDR2 534 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 FUCA2Q9BTY2 467 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 KANSL2Q9H9L4 492 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 DDX41Q9UJV9 622 aaKnown RBP2.85□□□□□ -1.95
VPS54-202ENST00000354504 RIPOR2Q9Y4F9 1068 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 CEP350Q5VT06 3117 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 SPDYE3A6NKU9 549 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 GRM8O00222 908 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 CAMTA2O94983 1202 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 MAPTP10636 758 aaKnown RBP2.85□□□□□ -1.95
VPS54-202ENST00000354504 DNAJA1P31689 397 aaKnown RBP2.85□□□□□ -1.95
VPS54-202ENST00000354504 EIF5P55010 431 aaKnown RBP2.85□□□□□ -1.95
VPS54-202ENST00000354504 RUFY3Q7L099 469 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 ZGPATQ8N5A5 531 aaKnown RBP2.85□□□□□ -1.95
VPS54-202ENST00000354504 GPT2Q8TD30 523 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 MAP4K1Q92918 833 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 TCF12Q99081 682 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 ADAMTS1Q9UHI8 967 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 CHMP3Q9Y3E7 222 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 LAS1LQ9Y4W2 734 aaKnown RBP2.85□□□□□ -1.95
VPS54-202ENST00000354504 SNX14Q9Y5W7 946 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 ZSWIM8A7E2V4 1837 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 TTC41PQ6P2S7 1318 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 SH3TC1Q8TE82 1336 aa2.85□□□□□ -1.95
VPS54-202ENST00000354504 LAMA2P24043 3122 aaKnown RBP2.84□□□□□ -1.95
VPS54-202ENST00000354504 LAMA3Q16787 3333 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 A0A0D9SFI3 127 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 GNB5O14775 395 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms