RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 DDX60LQ5H9U9 1706 aaKnown RBP11.71□□□□□ -0.53
LIMA1-201ENST00000341247 GPR75-ASB3A0A0A6YYF3 556 aa11.71□□□□□ -0.53
LIMA1-201ENST00000341247 PPP1R3GB7ZBB8 358 aa11.71□□□□□ -0.53
LIMA1-201ENST00000341247 G3V3G9 751 aa11.71□□□□□ -0.53
LIMA1-201ENST00000341247 STXBP3O00186 592 aa11.71□□□□□ -0.53
LIMA1-201ENST00000341247 RHBDL3P58872 404 aa11.71□□□□□ -0.53
LIMA1-201ENST00000341247 ELF2Q15723 593 aa11.71□□□□□ -0.53
LIMA1-201ENST00000341247 DCAF8Q5TAQ9 597 aa11.71□□□□□ -0.53
LIMA1-201ENST00000341247 DTHD1Q6ZMT9 781 aa11.71□□□□□ -0.53
LIMA1-201ENST00000341247 KCNQ5Q9NR82 932 aa11.71□□□□□ -0.53
LIMA1-201ENST00000341247 TRPC5Q9UL62 973 aaPredicted RBP11.71□□□□□ -0.53
LIMA1-201ENST00000341247 DAGLAQ9Y4D2 1042 aa11.71□□□□□ -0.53
LIMA1-201ENST00000341247 TRIM49BA6NDI0 452 aa11.71□□□□□ -0.54
LIMA1-201ENST00000341247 SMCO2A6NFE2 343 aa11.71□□□□□ -0.54
LIMA1-201ENST00000341247 CCNT1O60563 726 aaKnown RBP11.71□□□□□ -0.54
LIMA1-201ENST00000341247 TXLNAP40222 546 aa11.71□□□□□ -0.54
LIMA1-201ENST00000341247 UBA7P41226 1012 aa11.71□□□□□ -0.54
LIMA1-201ENST00000341247 CACNB3P54284 484 aa11.71□□□□□ -0.54
LIMA1-201ENST00000341247 E2F4Q16254 413 aa11.71□□□□□ -0.54
LIMA1-201ENST00000341247 SPATA1Q5VX52 437 aa11.71□□□□□ -0.54
LIMA1-201ENST00000341247 TC2NQ8N9U0 490 aa11.71□□□□□ -0.54
LIMA1-201ENST00000341247 TMEM260Q9NX78 707 aa11.71□□□□□ -0.54
LIMA1-201ENST00000341247 MPHOSPH10O00566 681 aaKnown RBP11.7□□□□□ -0.54
LIMA1-201ENST00000341247 GNAQP50148 359 aa11.7□□□□□ -0.54
LIMA1-201ENST00000341247 GLIPR1L2Q4G1C9 344 aa11.7□□□□□ -0.54
LIMA1-201ENST00000341247 PDXDC2PQ6P474 469 aa11.7□□□□□ -0.54
LIMA1-201ENST00000341247 COA7Q96BR5 231 aa11.7□□□□□ -0.54
LIMA1-201ENST00000341247 TAB2Q9NYJ8 693 aa11.7□□□□□ -0.54
LIMA1-201ENST00000341247 TTF2Q9UNY4 1162 aaKnown RBP11.7□□□□□ -0.54
LIMA1-201ENST00000341247 PCDHAC2Q9Y5I4 1007 aa11.7□□□□□ -0.54
LIMA1-201ENST00000341247 PALM3A6NDB9 673 aaPredicted RBP11.7□□□□□ -0.54
LIMA1-201ENST00000341247 FAM196BA6NMK8 535 aa11.7□□□□□ -0.54
LIMA1-201ENST00000341247 PPEF1O14829 653 aaPredicted RBP11.7□□□□□ -0.54
LIMA1-201ENST00000341247 URI1O94763 535 aaPredicted RBP11.7□□□□□ -0.54
LIMA1-201ENST00000341247 ERCC5P28715 1186 aaPredicted RBP11.7□□□□□ -0.54
LIMA1-201ENST00000341247 DPP8Q6V1X1 898 aaPredicted RBP11.7□□□□□ -0.54
LIMA1-201ENST00000341247 ELOA2Q8IYF1 753 aaPredicted RBP11.7□□□□□ -0.54
LIMA1-201ENST00000341247 C4orf32Q8N8J7 132 aa11.7□□□□□ -0.54
LIMA1-201ENST00000341247 IGSF22Q8N9C0 903 aa11.7□□□□□ -0.54
LIMA1-201ENST00000341247 GSDMAQ96QA5 445 aa11.7□□□□□ -0.54
LIMA1-201ENST00000341247 BARHL2Q9NY43 387 aa11.7□□□□□ -0.54
LIMA1-201ENST00000341247 PSDA5PKW4 1024 aaPredicted RBP11.7□□□□□ -0.54
LIMA1-201ENST00000341247 SOWAHDA6NJG2 315 aa11.7□□□□□ -0.54
LIMA1-201ENST00000341247 BBOX1O75936 387 aa11.7□□□□□ -0.54
LIMA1-201ENST00000341247 RBL2Q08999 1139 aa11.7□□□□□ -0.54
LIMA1-201ENST00000341247 C16orf86Q6ZW13 317 aa11.7□□□□□ -0.54
LIMA1-201ENST00000341247 MTERF4Q7Z6M4 381 aaKnown RBP11.7□□□□□ -0.54
LIMA1-201ENST00000341247 SEC63Q9UGP8 760 aaKnown RBP11.7□□□□□ -0.54
LIMA1-201ENST00000341247 PPP2R2CQ9Y2T4 447 aa11.7□□□□□ -0.54
LIMA1-201ENST00000341247 A0A0U1RQJ8 604 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 IL1R1P14778 569 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 AKR1B1P15121 316 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 TRAPPC10P48553 1259 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 NR1I3Q14994 352 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 CCDC148Q8NFR7 591 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 NELFBQ8WX92 580 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 ATRIPQ8WXE1 791 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 ZC3H12CQ9C0D7 883 aaKnown RBP11.69□□□□□ -0.54
LIMA1-201ENST00000341247 DDX4Q9NQI0 724 aaKnown RBP11.69□□□□□ -0.54
LIMA1-201ENST00000341247 N4BP3O15049 544 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 RPN1P04843 607 aaKnown RBP11.69□□□□□ -0.54
LIMA1-201ENST00000341247 TECP42680 631 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 TXNRD1Q16881 649 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 SOGA3Q5TF21 947 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 TMEM139Q8IV31 216 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 CERS5Q8N5B7 392 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 ANKRD7Q92527 254 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 IRX2Q9BZI1 471 aaPredicted RBP11.69□□□□□ -0.54
LIMA1-201ENST00000341247 ZNF287Q9HBT7 754 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 FANCGO15287 622 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 ADRA2BP18089 450 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 TCP10Q12799 353 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 ERCC6LQ2NKX8 1250 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 PPFIBP1Q86W92 1011 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 NEDD1Q8NHV4 660 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 ZNF622Q969S3 477 aaKnown RBP eCLIP11.69□□□□□ -0.546e-8■□□□□ 9.1
LIMA1-201ENST00000341247 RRP36Q96EU6 259 aaKnown RBP11.69□□□□□ -0.54
LIMA1-201ENST00000341247 CCDC94Q9BW85 323 aaPredicted RBP11.69□□□□□ -0.54
LIMA1-201ENST00000341247 DBNDD1Q9H9R9 158 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 LZTFL1Q9NQ48 299 aa11.69□□□□□ -0.54
LIMA1-201ENST00000341247 GTPBP6O43824 516 aaPredicted RBP11.68□□□□□ -0.54
LIMA1-201ENST00000341247 SLC16A2P36021 539 aa11.68□□□□□ -0.54
LIMA1-201ENST00000341247 PRCPP42785 496 aa11.68□□□□□ -0.54
LIMA1-201ENST00000341247 KRT27Q7Z3Y8 459 aa11.68□□□□□ -0.54
LIMA1-201ENST00000341247 COL23A1Q86Y22 540 aaPredicted RBP11.68□□□□□ -0.54
LIMA1-201ENST00000341247 REXO1L1PQ8IX06 675 aa11.68□□□□□ -0.54
LIMA1-201ENST00000341247 LRRC15Q8TF66 581 aa11.68□□□□□ -0.54
LIMA1-201ENST00000341247 DISC1Q9NRI5 854 aa11.68□□□□□ -0.54
LIMA1-201ENST00000341247 COL11A2P13942 1736 aaPredicted RBP11.68□□□□□ -0.54
LIMA1-201ENST00000341247 A0A1B0GTH6 734 aa11.68□□□□□ -0.54
LIMA1-201ENST00000341247 SLU7O95391 586 aaKnown RBP11.68□□□□□ -0.54
LIMA1-201ENST00000341247 CASP14P31944 242 aa11.68□□□□□ -0.54
LIMA1-201ENST00000341247 GNG11P61952 73 aa11.68□□□□□ -0.54
LIMA1-201ENST00000341247 ETF1P62495 437 aaKnown RBP11.68□□□□□ -0.54
LIMA1-201ENST00000341247 TBX2Q13207 712 aaPredicted RBP11.68□□□□□ -0.54
LIMA1-201ENST00000341247 GJA10Q969M2 543 aa11.68□□□□□ -0.54
LIMA1-201ENST00000341247 USP40Q9NVE5 1235 aa11.68□□□□□ -0.54
LIMA1-201ENST00000341247 SNED1Q8TER0 1413 aa11.68□□□□□ -0.54
LIMA1-201ENST00000341247 ARHGAP6O43182 974 aa11.68□□□□□ -0.54
LIMA1-201ENST00000341247 PLCG2P16885 1265 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms