RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 ARL6IP4Q66PJ3 421 aaKnown RBP24.76■■□□□ 1.55
SHMT1-201ENST00000316694 LINC00116Q8NCU8 138 aa24.76■■□□□ 1.55
SHMT1-201ENST00000316694 CHP1Q99653 195 aa24.76■■□□□ 1.55
SHMT1-201ENST00000316694 CALML3P27482 149 aa24.76■■□□□ 1.55
SHMT1-201ENST00000316694 TUBB2AQ13885 445 aa24.76■■□□□ 1.55
SHMT1-201ENST00000316694 MCM6Q14566 821 aa24.76■■□□□ 1.55
SHMT1-201ENST00000316694 SF3B3Q15393 1217 aaKnown RBP24.76■■□□□ 1.55
SHMT1-201ENST00000316694 TUBB2BQ9BVA1 445 aa24.76■■□□□ 1.55
SHMT1-201ENST00000316694 WWC2Q6AWC2 1192 aa24.75■■□□□ 1.55
SHMT1-201ENST00000316694 KAT14Q9H8E8 782 aa24.75■■□□□ 1.55
SHMT1-201ENST00000316694 SCN7AQ01118 1682 aa24.75■■□□□ 1.55
SHMT1-201ENST00000316694 POTEB2H3BUK9 544 aa24.75■■□□□ 1.55
SHMT1-201ENST00000316694 PARP1P09874 1014 aaKnown RBP24.75■■□□□ 1.55
SHMT1-201ENST00000316694 RCSD1Q6JBY9 416 aa24.75■■□□□ 1.55
SHMT1-201ENST00000316694 C4orf32Q8N8J7 132 aa24.75■■□□□ 1.55
SHMT1-201ENST00000316694 PLIN2Q99541 437 aa24.75■■□□□ 1.55
SHMT1-201ENST00000316694 ATP8A2Q9NTI2 1148 aa24.75■■□□□ 1.55
SHMT1-201ENST00000316694 CTAGE15A4D2H0 777 aa24.74■■□□□ 1.55
SHMT1-201ENST00000316694 PP2D1A8MPX8 630 aa24.74■■□□□ 1.55
SHMT1-201ENST00000316694 H3BQF6 201 aa24.74■■□□□ 1.55
SHMT1-201ENST00000316694 CTAGE8P0CG41 777 aa24.74■■□□□ 1.55
SHMT1-201ENST00000316694 HNRNPH2P55795 449 aaKnown RBP24.74■■□□□ 1.55
SHMT1-201ENST00000316694 CLEC4GQ6UXB4 293 aa24.74■■□□□ 1.55
SHMT1-201ENST00000316694 FBXO33Q7Z6M2 555 aa24.74■■□□□ 1.55
SHMT1-201ENST00000316694 CTAGE6Q86UF2 777 aa24.74■■□□□ 1.55
SHMT1-201ENST00000316694 CTAGE4Q8IX94 777 aa24.74■■□□□ 1.55
SHMT1-201ENST00000316694 DISC1Q9NRI5 854 aa24.74■■□□□ 1.55
SHMT1-201ENST00000316694 MCM9Q9NXL9 1143 aa24.74■■□□□ 1.55
SHMT1-201ENST00000316694 ARPP21Q9UBL0 812 aaPredicted RBP24.74■■□□□ 1.55
SHMT1-201ENST00000316694 BEND6Q5SZJ8 279 aaPredicted RBP24.74■■□□□ 1.55
SHMT1-201ENST00000316694 MSANTD4Q8NCY6 345 aa24.74■■□□□ 1.55
SHMT1-201ENST00000316694 GUCA1BQ9UMX6 200 aa24.74■■□□□ 1.55
SHMT1-201ENST00000316694 H7C1D1 291 aa24.73■■□□□ 1.55
SHMT1-201ENST00000316694 MAP2K7O14733 419 aa24.73■■□□□ 1.55
SHMT1-201ENST00000316694 IRF2BP1Q8IU81 584 aa24.73■■□□□ 1.55
SHMT1-201ENST00000316694 STAG2Q8N3U4 1231 aa24.73■■□□□ 1.55
SHMT1-201ENST00000316694 CCDC24Q8N4L8 307 aa24.73■■□□□ 1.55
SHMT1-201ENST00000316694 HNRNPLLQ8WVV9 542 aaKnown RBP24.73■■□□□ 1.55
SHMT1-201ENST00000316694 TRIM10Q9UDY6 481 aa24.73■■□□□ 1.55
SHMT1-201ENST00000316694 PCDHA4Q9UN74 947 aa24.73■■□□□ 1.55
SHMT1-201ENST00000316694 MTMR7Q9Y216 660 aa24.73■■□□□ 1.55
SHMT1-201ENST00000316694 SPATA31A5Q5VU36 1347 aa24.73■■□□□ 1.55
SHMT1-201ENST00000316694 SPATA31A7Q8IWB4 1347 aa24.73■■□□□ 1.55
SHMT1-201ENST00000316694 CCDC194A0A1B0GVG4 234 aa24.73■■□□□ 1.55
SHMT1-201ENST00000316694 TTC26A0AVF1 554 aa24.73■■□□□ 1.55
SHMT1-201ENST00000316694 USP17L8P0C7I0 530 aa24.73■■□□□ 1.55
SHMT1-201ENST00000316694 PMS1P54277 932 aaKnown RBP24.73■■□□□ 1.55
SHMT1-201ENST00000316694 GPS2Q13227 327 aa24.73■■□□□ 1.55
SHMT1-201ENST00000316694 TBC1D9BQ66K14 1250 aa24.73■■□□□ 1.55
SHMT1-201ENST00000316694 DTHD1Q6ZMT9 781 aa24.73■■□□□ 1.55
SHMT1-201ENST00000316694 MYO1AQ9UBC5 1043 aa24.73■■□□□ 1.55
SHMT1-201ENST00000316694 RAB21Q9UL25 225 aa24.73■■□□□ 1.55
SHMT1-201ENST00000316694 EPN1Q9Y6I3 576 aaPredicted RBP24.73■■□□□ 1.55
SHMT1-201ENST00000316694 ERLIN1O75477 346 aa24.72■■□□□ 1.55
SHMT1-201ENST00000316694 HIBADHP31937 336 aaKnown RBP24.72■■□□□ 1.55
SHMT1-201ENST00000316694 TFAP4Q01664 338 aa24.72■■□□□ 1.55
SHMT1-201ENST00000316694 WHAMMP3Q1A5X7 153 aa24.72■■□□□ 1.55
SHMT1-201ENST00000316694 ADSSL1Q8N142 457 aa24.72■■□□□ 1.55
SHMT1-201ENST00000316694 SUGCTQ9HAC7 445 aa24.72■■□□□ 1.55
SHMT1-201ENST00000316694 ABCB6Q9NP58 842 aa24.72■■□□□ 1.55
SHMT1-201ENST00000316694 NDUFA10O95299 355 aa24.72■■□□□ 1.55
SHMT1-201ENST00000316694 HDXQ7Z353 690 aa24.72■■□□□ 1.55
SHMT1-201ENST00000316694 TXLNBQ8N3L3 684 aa24.72■■□□□ 1.55
SHMT1-201ENST00000316694 PDE11AQ9HCR9 933 aa24.72■■□□□ 1.55
SHMT1-201ENST00000316694 AHDC1Q5TGY3 1603 aaPredicted RBP24.71■■□□□ 1.55
SHMT1-201ENST00000316694 USP5P45974 858 aa24.71■■□□□ 1.55
SHMT1-201ENST00000316694 PIP4K2BP78356 416 aa24.71■■□□□ 1.55
SHMT1-201ENST00000316694 NAALADL2Q58DX5 795 aa24.71■■□□□ 1.55
SHMT1-201ENST00000316694 NCAPH2Q6IBW4 605 aa24.71■■□□□ 1.55
SHMT1-201ENST00000316694 TYW1BQ6NUM6 668 aa24.71■■□□□ 1.55
SHMT1-201ENST00000316694 MB21D1Q8N884 522 aa24.71■■□□□ 1.55
SHMT1-201ENST00000316694 PNMA1Q8ND90 353 aa24.71■■□□□ 1.55
SHMT1-201ENST00000316694 SMARCC1Q92922 1105 aaPredicted RBP24.71■■□□□ 1.55
SHMT1-201ENST00000316694 MYO6Q9UM54 1294 aa24.71■■□□□ 1.55
SHMT1-201ENST00000316694 NRAPQ86VF7 1730 aa24.71■■□□□ 1.55
SHMT1-201ENST00000316694 LAMB1P07942 1786 aa24.71■■□□□ 1.55
SHMT1-201ENST00000316694 TRIM47Q96LD4 638 aa24.71■■□□□ 1.55
SHMT1-201ENST00000316694 TMEM60Q9H2L4 133 aa24.71■■□□□ 1.55
SHMT1-201ENST00000316694 LUC7L2Q9Y383 392 aaKnown RBP24.71■■□□□ 1.55
SHMT1-201ENST00000316694 REXO2Q9Y3B8 237 aaKnown RBP24.71■■□□□ 1.55
SHMT1-201ENST00000316694 CASZ1Q86V15 1759 aa24.7■■□□□ 1.55
SHMT1-201ENST00000316694 VSNL1P62760 191 aa24.7■■□□□ 1.54
SHMT1-201ENST00000316694 OR8K1Q8NGG5 319 aa24.7■■□□□ 1.54
SHMT1-201ENST00000316694 UBA7P41226 1012 aa24.7■■□□□ 1.54
SHMT1-201ENST00000316694 TUBB4BP68371 445 aa24.7■■□□□ 1.54
SHMT1-201ENST00000316694 INF2Q27J81 1249 aa24.7■■□□□ 1.54
SHMT1-201ENST00000316694 SBK1Q52WX2 424 aa24.7■■□□□ 1.54
SHMT1-201ENST00000316694 PTF1AQ7RTS3 328 aa24.7■■□□□ 1.54
SHMT1-201ENST00000316694 NOA1Q8NC60 698 aaKnown RBP24.7■■□□□ 1.54
SHMT1-201ENST00000316694 IL17RBQ9NRM6 502 aa24.7■■□□□ 1.54
SHMT1-201ENST00000316694 ADAM21Q9UKJ8 722 aa24.7■■□□□ 1.54
SHMT1-201ENST00000316694 LGALS16A8MUM7 142 aa24.69■■□□□ 1.54
SHMT1-201ENST00000316694 EEF2KMTQ96G04 330 aa24.69■■□□□ 1.54
SHMT1-201ENST00000316694 RPS8P62241 208 aaKnown RBP24.69■■□□□ 1.54
SHMT1-201ENST00000316694 HEATR3Q7Z4Q2 680 aa24.69■■□□□ 1.54
SHMT1-201ENST00000316694 DZIP1Q86YF9 867 aaKnown RBP24.69■■□□□ 1.54
SHMT1-201ENST00000316694 DYNLL2Q96FJ2 89 aa24.69■■□□□ 1.54
SHMT1-201ENST00000316694 SH3GLB2Q9NR46 395 aa24.69■■□□□ 1.54
SHMT1-201ENST00000316694 TFR2Q9UP52 801 aa24.69■■□□□ 1.54
SHMT1-201ENST00000316694 ENC1O14682 589 aa24.68■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms