RNA–Protein interactions for RNA: ENST00000237289.8

TNFAIP3-201, Transcript of TNF alpha induced protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFAIP3, Length 4,432 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFAIP3-201ENST00000237289 SEC23AQ15436 765 aa12.8□□□□□ -0.36
TNFAIP3-201ENST00000237289 CDC37Q16543 378 aaPredicted RBP12.8□□□□□ -0.36
TNFAIP3-201ENST00000237289 NOL9Q5SY16 702 aaKnown RBP12.8□□□□□ -0.36
TNFAIP3-201ENST00000237289 GMCL1P1Q8NEA9 526 aa12.8□□□□□ -0.36
TNFAIP3-201ENST00000237289 RNF26Q9BY78 433 aaPredicted RBP12.8□□□□□ -0.36
TNFAIP3-201ENST00000237289 CFBP00751 764 aa12.8□□□□□ -0.36
TNFAIP3-201ENST00000237289 IFNAR1P17181 557 aa12.8□□□□□ -0.36
TNFAIP3-201ENST00000237289 VCAM1P19320 739 aa12.8□□□□□ -0.36
TNFAIP3-201ENST00000237289 TMTC3Q6ZXV5 915 aa12.8□□□□□ -0.36
TNFAIP3-201ENST00000237289 ANKRD35Q8N283 1001 aa12.8□□□□□ -0.36
TNFAIP3-201ENST00000237289 CPVLQ9H3G5 476 aa12.8□□□□□ -0.36
TNFAIP3-201ENST00000237289 SENP2Q9HC62 589 aa12.8□□□□□ -0.36
TNFAIP3-201ENST00000237289 SNCAIPQ9Y6H5 919 aa12.8□□□□□ -0.36
TNFAIP3-201ENST00000237289 PLEKHA8P1O95397 391 aa12.79□□□□□ -0.36
TNFAIP3-201ENST00000237289 SCG2P13521 617 aa12.79□□□□□ -0.36
TNFAIP3-201ENST00000237289 TTBK2Q6IQ55 1244 aa12.79□□□□□ -0.36
TNFAIP3-201ENST00000237289 SYNPO2Q9UMS6 1093 aa12.79□□□□□ -0.36
TNFAIP3-201ENST00000237289 MCF2L2Q86YR7 1114 aa12.79□□□□□ -0.36
TNFAIP3-201ENST00000237289 STAG2Q8N3U4 1231 aa12.79□□□□□ -0.36
TNFAIP3-201ENST00000237289 GTF3C2Q8WUA4 911 aaPredicted RBP12.79□□□□□ -0.36
TNFAIP3-201ENST00000237289 CNKSR2Q8WXI2 1034 aa12.79□□□□□ -0.36
TNFAIP3-201ENST00000237289 MKL1Q969V6 931 aa12.79□□□□□ -0.36
TNFAIP3-201ENST00000237289 SLC5A4Q9NY91 659 aa12.79□□□□□ -0.36
TNFAIP3-201ENST00000237289 ZNF112Q9UJU3 913 aa12.79□□□□□ -0.36
TNFAIP3-201ENST00000237289 ZBTB48P10074 688 aaPredicted RBP12.79□□□□□ -0.36
TNFAIP3-201ENST00000237289 SNAP25P60880 206 aa12.79□□□□□ -0.36
TNFAIP3-201ENST00000237289 KCTD2Q14681 263 aa12.79□□□□□ -0.36
TNFAIP3-201ENST00000237289 FERMT3Q86UX7 667 aa12.79□□□□□ -0.36
TNFAIP3-201ENST00000237289 FCHSD1Q86WN1 690 aa12.79□□□□□ -0.36
TNFAIP3-201ENST00000237289 PROCA1Q8NCQ7 364 aaPredicted RBP12.79□□□□□ -0.36
TNFAIP3-201ENST00000237289 GMCL1Q96IK5 515 aa12.79□□□□□ -0.36
TNFAIP3-201ENST00000237289 ZNF396Q96N95 335 aaPredicted RBP12.79□□□□□ -0.36
TNFAIP3-201ENST00000237289 JAK2O60674 1132 aa12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 ALDH1A1P00352 501 aa12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 ADCY7P51828 1080 aa12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 SHROOM1Q2M3G4 852 aaPredicted RBP12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 SPRYD7Q5W111 196 aa12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 CYP4F22Q6NT55 531 aa12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 MAP3K14Q99558 947 aa12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 PNMA6FA0A0J9YX94 578 aa12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 PHF20L1A8MW92 1017 aa12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 ADGRF4Q8IZF3 695 aa12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 ANKS1AQ92625 1134 aa12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 COL2A1P02458 1487 aaPredicted RBP12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 METTL16Q86W50 562 aaKnown RBP12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 CAPNS2Q96L46 248 aa12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 RAVER2Q9HCJ3 691 aaKnown RBP12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 SMCO2A6NFE2 343 aa12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 ZBTB5O15062 677 aa12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 STX6O43752 255 aa12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 KRT2P35908 639 aa12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 TROAPQ12815 778 aa12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 GPKOWQ92917 476 aaPredicted RBP eCLIP12.78□□□□□ -0.362e-6■■■■■ 37.1
TNFAIP3-201ENST00000237289 KIF2CQ99661 725 aa12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 VPS54Q9P1Q0 977 aa12.78□□□□□ -0.36
TNFAIP3-201ENST00000237289 PDHXO00330 501 aa12.77□□□□□ -0.36
TNFAIP3-201ENST00000237289 SNRNP48Q6IEG0 339 aaKnown RBP12.77□□□□□ -0.36
TNFAIP3-201ENST00000237289 MB21D1Q8N884 522 aa12.77□□□□□ -0.36
TNFAIP3-201ENST00000237289 PSTPIP2Q9H939 334 aa12.77□□□□□ -0.36
TNFAIP3-201ENST00000237289 PRPF3O43395 683 aaKnown RBP12.77□□□□□ -0.37
TNFAIP3-201ENST00000237289 DTNBO60941 627 aa12.77□□□□□ -0.37
TNFAIP3-201ENST00000237289 FMNL1O95466 1100 aaPredicted RBP12.77□□□□□ -0.37
TNFAIP3-201ENST00000237289 STAT3P40763 770 aa12.77□□□□□ -0.37
TNFAIP3-201ENST00000237289 PRR12Q9ULL5 1215 aa12.77□□□□□ -0.37
TNFAIP3-201ENST00000237289 ITGBL1O95965 494 aaPredicted RBP12.77□□□□□ -0.37
TNFAIP3-201ENST00000237289 FBXO28Q9NVF7 368 aa12.77□□□□□ -0.37
TNFAIP3-201ENST00000237289 AFG3L2Q9Y4W6 797 aa12.77□□□□□ -0.37
TNFAIP3-201ENST00000237289 A0A1W2PRG0 241 aa12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 GCOM1H8Y6P7 765 aaPredicted RBP12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 POLR2MP0CAP2 368 aa12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 CDC27P30260 824 aa12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 FBXO40Q9UH90 709 aa12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 AGTPBP1Q9UPW5 1226 aa12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 hCG_1984214I3L0E3 225 aa12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 DPP9Q86TI2 863 aa12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 SAPCD2Q86UD0 394 aa12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 ZNF713Q8N859 430 aaPredicted RBP12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 ATG4CQ96DT6 458 aa12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 BIN2Q9UBW5 565 aaPredicted RBP12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 LARGE1O95461 756 aa12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 RRP1BQ14684 758 aaKnown RBP12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 COA7Q96BR5 231 aa12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 SPZ1Q9BXG8 430 aa12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 CREBZFQ9NS37 354 aa12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 CD2BP2O95400 341 aaKnown RBP12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 COPB2P35606 906 aa12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 CEBPZQ03701 1054 aaKnown RBP12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 QRICH1Q2TAL8 776 aa12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 LDLRAD1Q5T700 205 aa12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 NSUN7Q8NE18 718 aaKnown RBP12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 TLL2Q9Y6L7 1015 aa12.76□□□□□ -0.37
TNFAIP3-201ENST00000237289 GCLCP48506 637 aaPredicted RBP12.75□□□□□ -0.37
TNFAIP3-201ENST00000237289 MAP3K10Q02779 954 aa12.75□□□□□ -0.37
TNFAIP3-201ENST00000237289 STK38Q15208 465 aa12.75□□□□□ -0.37
TNFAIP3-201ENST00000237289 MAP3K11Q16584 847 aa12.75□□□□□ -0.37
TNFAIP3-201ENST00000237289 JAKMIP3Q5VZ66 844 aa12.75□□□□□ -0.37
TNFAIP3-201ENST00000237289 TEX13BQ9BXU2 312 aa12.75□□□□□ -0.37
TNFAIP3-201ENST00000237289 LTBP1Q14766 1721 aa12.75□□□□□ -0.37
TNFAIP3-201ENST00000237289 KIF23Q02241 960 aaPredicted RBP12.75□□□□□ -0.37
TNFAIP3-201ENST00000237289 REXO1Q8N1G1 1221 aaKnown RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms