RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 POTEEQ6S8J3 1075 aa23.85■■□□□ 1.41
PTCD3-220ENST00000627371 CD99L2Q8TCZ2 262 aa23.85■■□□□ 1.41
PTCD3-220ENST00000627371 DOCK3Q8IZD9 2030 aa23.84■■□□□ 1.41
PTCD3-220ENST00000627371 BMP3P12645 472 aa23.84■■□□□ 1.41
PTCD3-220ENST00000627371 ANTXR2P58335 489 aa23.84■■□□□ 1.41
PTCD3-220ENST00000627371 KRT32Q14532 448 aa23.84■■□□□ 1.41
PTCD3-220ENST00000627371 USP26Q9BXU7 913 aa23.84■■□□□ 1.41
PTCD3-220ENST00000627371 TXNRD2Q9NNW7 524 aa23.84■■□□□ 1.41
PTCD3-220ENST00000627371 FBXO28Q9NVF7 368 aa23.84■■□□□ 1.41
PTCD3-220ENST00000627371 RBPJLQ9UBG7 517 aa23.84■■□□□ 1.41
PTCD3-220ENST00000627371 RABGAP1Q9Y3P9 1069 aa23.84■■□□□ 1.41
PTCD3-220ENST00000627371 EIF5BO60841 1220 aaKnown RBP23.83■■□□□ 1.41
PTCD3-220ENST00000627371 MCCP23508 829 aa23.83■■□□□ 1.41
PTCD3-220ENST00000627371 KIF22Q14807 665 aa23.83■■□□□ 1.41
PTCD3-220ENST00000627371 SART3Q15020 963 aaKnown RBP23.83■■□□□ 1.41
PTCD3-220ENST00000627371 IFIT1BQ5T764 474 aaKnown RBP23.83■■□□□ 1.41
PTCD3-220ENST00000627371 CHST3Q7LGC8 479 aa23.83■■□□□ 1.41
PTCD3-220ENST00000627371 DCAF4Q8WV16 495 aa23.83■■□□□ 1.41
PTCD3-220ENST00000627371 MTA3Q9BTC8 594 aa23.83■■□□□ 1.41
PTCD3-220ENST00000627371 KAT14Q9H8E8 782 aa23.83■■□□□ 1.41
PTCD3-220ENST00000627371 PPP1R9AQ9ULJ8 1098 aa23.83■■□□□ 1.41
PTCD3-220ENST00000627371 ERICH2A1L162 156 aa23.82■■□□□ 1.4
PTCD3-220ENST00000627371 IFIT3O14879 490 aaKnown RBP23.82■■□□□ 1.4
PTCD3-220ENST00000627371 MCM5P33992 734 aa23.82■■□□□ 1.4
PTCD3-220ENST00000627371 ERVK-9P63128 1117 aa23.82■■□□□ 1.4
PTCD3-220ENST00000627371 ERVK-24P63145 666 aa23.82■■□□□ 1.4
PTCD3-220ENST00000627371 CAP1Q01518 475 aa23.82■■□□□ 1.4
PTCD3-220ENST00000627371 RASGRP2Q7LDG7 609 aa23.82■■□□□ 1.4
PTCD3-220ENST00000627371 PNMA1Q8ND90 353 aa23.82■■□□□ 1.4
PTCD3-220ENST00000627371 ATG4CQ96DT6 458 aa23.82■■□□□ 1.4
PTCD3-220ENST00000627371 NEK1Q96PY6 1258 aa23.82■■□□□ 1.4
PTCD3-220ENST00000627371 SLF1Q9BQI6 1058 aa23.82■■□□□ 1.4
PTCD3-220ENST00000627371 PAGR1Q9BTK6 254 aa23.82■■□□□ 1.4
PTCD3-220ENST00000627371 FEM1BQ9UK73 627 aa23.82■■□□□ 1.4
PTCD3-220ENST00000627371 MTMR7Q9Y216 660 aa23.82■■□□□ 1.4
PTCD3-220ENST00000627371 PRC1O43663 620 aa23.81■■□□□ 1.4
PTCD3-220ENST00000627371 CNMDO75829 334 aa23.81■■□□□ 1.4
PTCD3-220ENST00000627371 PDHBP11177 359 aa23.81■■□□□ 1.4
PTCD3-220ENST00000627371 COL9A3Q14050 684 aaPredicted RBP23.81■■□□□ 1.4
PTCD3-220ENST00000627371 ADCK5Q3MIX3 580 aa23.81■■□□□ 1.4
PTCD3-220ENST00000627371 CTU1Q7Z7A3 348 aaKnown RBP23.81■■□□□ 1.4
PTCD3-220ENST00000627371 MB21D1Q8N884 522 aa23.81■■□□□ 1.4
PTCD3-220ENST00000627371 GPRC5AQ8NFJ5 357 aa23.81■■□□□ 1.4
PTCD3-220ENST00000627371 ARHGAP39Q9C0H5 1083 aa23.81■■□□□ 1.4
PTCD3-220ENST00000627371 ADAMTS5Q9UNA0 930 aa23.81■■□□□ 1.4
PTCD3-220ENST00000627371 SNX14Q9Y5W7 946 aa23.81■■□□□ 1.4
PTCD3-220ENST00000627371 PEX10O60683 326 aa23.8■■□□□ 1.4
PTCD3-220ENST00000627371 SNHG28P0DPA3 235 aa23.8■■□□□ 1.4
PTCD3-220ENST00000627371 CTGFP29279 349 aa23.8■■□□□ 1.4
PTCD3-220ENST00000627371 STAT2P52630 851 aa23.8■■□□□ 1.4
PTCD3-220ENST00000627371 WTAPQ15007 396 aa23.8■■□□□ 1.4
PTCD3-220ENST00000627371 ARHGEF6Q15052 776 aa23.8■■□□□ 1.4
PTCD3-220ENST00000627371 CCDC96Q2M329 555 aa23.8■■□□□ 1.4
PTCD3-220ENST00000627371 C8orf34Q49A92 452 aa23.8■■□□□ 1.4
PTCD3-220ENST00000627371 SAMD1Q6SPF0 538 aaPredicted RBP23.8■■□□□ 1.4
PTCD3-220ENST00000627371 KCTD1Q719H9 257 aa23.8■■□□□ 1.4
PTCD3-220ENST00000627371 PRPF38AQ8NAV1 312 aaKnown RBP23.8■■□□□ 1.4
PTCD3-220ENST00000627371 IGDCC4Q8TDY8 1250 aa23.8■■□□□ 1.4
PTCD3-220ENST00000627371 CHMP4CQ96CF2 233 aa23.8■■□□□ 1.4
PTCD3-220ENST00000627371 BTBD7Q9P203 1132 aa23.8■■□□□ 1.4
PTCD3-220ENST00000627371 ISY1Q9ULR0 285 aaKnown RBP23.8■■□□□ 1.4
PTCD3-220ENST00000627371 TMEM232C9JQI7 657 aa23.79■■□□□ 1.4
PTCD3-220ENST00000627371 PLA2G6O60733 806 aa23.79■■□□□ 1.4
PTCD3-220ENST00000627371 PSMC4P43686 418 aa23.79■■□□□ 1.4
PTCD3-220ENST00000627371 FCGRTP55899 365 aa23.79■■□□□ 1.4
PTCD3-220ENST00000627371 Q3C1V9 767 aa23.79■■□□□ 1.4
PTCD3-220ENST00000627371 TMEM67Q5HYA8 995 aa23.79■■□□□ 1.4
PTCD3-220ENST00000627371 COL13A1Q5TAT6 717 aaPredicted RBP23.79■■□□□ 1.4
PTCD3-220ENST00000627371 FAM160B2Q86V87 743 aa23.79■■□□□ 1.4
PTCD3-220ENST00000627371 TMEM87BQ96K49 555 aa23.79■■□□□ 1.4
PTCD3-220ENST00000627371 EFCC1Q9HA90 598 aa23.79■■□□□ 1.4
PTCD3-220ENST00000627371 WDR19Q8NEZ3 1342 aa23.79■■□□□ 1.4
PTCD3-220ENST00000627371 VWA5AO00534 786 aa23.78■■□□□ 1.4
PTCD3-220ENST00000627371 OTOP1Q7RTM1 612 aa23.78■■□□□ 1.4
PTCD3-220ENST00000627371 CHURC1Q8WUH1 139 aa23.78■■□□□ 1.4
PTCD3-220ENST00000627371 KIFC2Q96AC6 838 aa23.78■■□□□ 1.4
PTCD3-220ENST00000627371 TRIM47Q96LD4 638 aa23.78■■□□□ 1.4
PTCD3-220ENST00000627371 TRIM17Q9Y577 477 aa23.78■■□□□ 1.4
PTCD3-220ENST00000627371 PLXNB2O15031 1838 aa23.77■■□□□ 1.4
PTCD3-220ENST00000627371 GNRH1P01148 92 aa23.77■■□□□ 1.4
PTCD3-220ENST00000627371 HMGB1P09429 215 aaKnown RBP23.77■■□□□ 1.4
PTCD3-220ENST00000627371 CCNA1P78396 465 aa23.77■■□□□ 1.4
PTCD3-220ENST00000627371 ZNF543Q08ER8 600 aa23.77■■□□□ 1.4
PTCD3-220ENST00000627371 DHX32Q7L7V1 743 aaKnown RBP23.77■■□□□ 1.4
PTCD3-220ENST00000627371 LY9Q9HBG7 655 aa23.77■■□□□ 1.4
PTCD3-220ENST00000627371 SENP2Q9HC62 589 aa23.77■■□□□ 1.4
PTCD3-220ENST00000627371 FRMPD2Q68DX3 1309 aaPredicted RBP23.77■■□□□ 1.4
PTCD3-220ENST00000627371 SH2B2O14492 632 aaPredicted RBP23.76■■□□□ 1.39
PTCD3-220ENST00000627371 ECM2O94769 699 aaPredicted RBP23.76■■□□□ 1.39
PTCD3-220ENST00000627371 FMNL1O95466 1100 aaPredicted RBP23.76■■□□□ 1.39
PTCD3-220ENST00000627371 IKQ13123 557 aaPredicted RBP23.76■■□□□ 1.39
PTCD3-220ENST00000627371 TMEM132BQ14DG7 1078 aa23.76■■□□□ 1.39
PTCD3-220ENST00000627371 GPATCH4Q5T3I0 446 aaKnown RBP23.76■■□□□ 1.39
PTCD3-220ENST00000627371 BTNL9Q6UXG8 535 aa23.76■■□□□ 1.39
PTCD3-220ENST00000627371 REPS2Q8NFH8 660 aa23.76■■□□□ 1.39
PTCD3-220ENST00000627371 JAKMIP1Q96N16 626 aaKnown RBP23.76■■□□□ 1.39
PTCD3-220ENST00000627371 SPATC1LQ9H0A9 340 aa23.76■■□□□ 1.39
PTCD3-220ENST00000627371 MYH6P13533 1939 aa23.76■■□□□ 1.39
PTCD3-220ENST00000627371 SEC24BO95487 1268 aa23.75■■□□□ 1.39
PTCD3-220ENST00000627371 FDX1P10109 184 aa23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms