RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 TEX35Q5T0J7 233 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 COL13A1Q5TAT6 717 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 RNF219Q5W0B1 726 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 TPH2Q8IWU9 490 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 GIMAP8Q8ND71 665 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 FAM49AQ9H0Q0 323 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 MFSD1Q9H3U5 465 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 TSPY26PQ9H489 355 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 ZSCAN16Q9H4T2 348 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 TDRD3Q9H7E2 651 aaKnown RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 KIF9Q9HAQ2 790 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 GGA3Q9NZ52 723 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 RIPOR2Q9Y4F9 1068 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 ZNF532Q9HCE3 1301 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 MLH3Q9UHC1 1453 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 B4E1Z4 1266 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 DEXIO95424 95 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 C6orf222P0C671 652 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 SSTR3P32745 418 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 IL13P35225 146 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 CRKP46108 304 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 STAT2P52630 851 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 MAP3K1Q13233 1512 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 POLA2Q14181 598 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 MUM1L1Q5H9M0 696 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 FAM102BQ5T8I3 360 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 CATSPER4Q7RTX7 472 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 LRRC47Q8N1G4 583 aaKnown RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 RYBPQ8N488 228 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 MYCT1Q8N699 235 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 ANKRD44Q8N8A2 993 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 RNF214Q8ND24 703 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 PPP1R14CQ8TAE6 165 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 PARD3BQ8TEW8 1205 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 PHACTR3Q96KR7 559 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 CENPHQ9H3R5 247 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 LRWD1Q9UFC0 647 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 MSRAQ9UJ68 235 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 V9GY48 417 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 TNS3Q68CZ2 1445 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 MANSC4A6NHS7 340 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 NEURL1BA8MQ27 555 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 PFDN6O15212 129 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 PDE8BO95263 885 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 TTLL1O95922 423 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 RAG1P15918 1043 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 ZAP70P43403 619 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 AFMP43652 599 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 GMPSP49915 693 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 KRT17Q04695 432 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 NMIQ13287 307 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 RASA3Q14644 834 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 NFIXQ14938 502 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 VEPH1Q14D04 833 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 STXBP2Q15833 593 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 KIAA0753Q2KHM9 967 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 LIN9Q5TKA1 542 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 CEP135Q66GS9 1140 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 DHX32Q7L7V1 743 aaKnown RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 IQUBQ8NA54 791 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 NKX2-3Q8TAU0 364 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 LRRC2Q9BYS8 371 aa3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 LARSQ9P2J5 1176 aaKnown RBP3.27□□□□□ -1.89
SMCHD1-203ENST00000577880 COL16A1Q07092 1604 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 CRB1P82279 1406 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 METP08581 1390 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 GOLGA6L10A0A0M3HER8 536 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 N4BP3O15049 544 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 CALUO43852 315 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 CCNT1O60563 726 aaKnown RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 EXOC3O60645 756 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 TRPA1O75762 1119 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 FSTL1Q12841 308 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 NOGQ13253 232 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 ANGEL2Q5VTE6 544 aaKnown RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 STYK1Q6J9G0 422 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 DSTYKQ6XUX3 929 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 TBC1D9Q6ZT07 1266 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 Q6ZUG5 572 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 TMEM179Q6ZVK1 233 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 THEM5Q8N1Q8 247 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 DNAJC5GQ8N7S2 189 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 CACTINQ8WUQ7 758 aaKnown RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 CRAMP1Q96RY5 1269 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 KATNAL1Q9BW62 490 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 CCDC94Q9BW85 323 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 NT5C3AQ9H0P0 336 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 FAM204AQ9H8W3 233 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 CPSF3Q9UKF6 684 aaKnown RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 INPP5FQ9Y2H2 1132 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 FARP1Q9Y4F1 1045 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 SAMD9Q5K651 1589 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 COL15A1P39059 1388 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 SPATA31A1Q5TZJ5 1347 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 C19orf81C9J6K1 198 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 F8W8V4 182 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 GIPC1O14908 333 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 MYZAPP0CAP1 466 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 PCP11498 1178 aaKnown RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 RGS2P41220 211 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms