RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 UBXN4Q92575 508 aa25.83■■□□□ 1.73
VPS53-211ENST00000571805 PYM1Q9BRP8 204 aaKnown RBP25.83■■□□□ 1.73
VPS53-211ENST00000571805 CLCN6P51797 869 aa25.82■■□□□ 1.72
VPS53-211ENST00000571805 TFAP4Q01664 338 aa25.82■■□□□ 1.72
VPS53-211ENST00000571805 ARL6IP4Q66PJ3 421 aaKnown RBP25.82■■□□□ 1.72
VPS53-211ENST00000571805 DGKHQ86XP1 1220 aa25.82■■□□□ 1.72
VPS53-211ENST00000571805 ANKS1AQ92625 1134 aa25.82■■□□□ 1.72
VPS53-211ENST00000571805 KIFC2Q96AC6 838 aa25.82■■□□□ 1.72
VPS53-211ENST00000571805 CTNND2Q9UQB3 1225 aa25.82■■□□□ 1.72
VPS53-211ENST00000571805 SOWAHDA6NJG2 315 aa25.82■■□□□ 1.72
VPS53-211ENST00000571805 EFCAB8A8MWE9 144 aa25.82■■□□□ 1.72
VPS53-211ENST00000571805 GTPBP6O43824 516 aaPredicted RBP25.82■■□□□ 1.72
VPS53-211ENST00000571805 CALML3P27482 149 aa25.82■■□□□ 1.72
VPS53-211ENST00000571805 TPTE2Q6XPS3 522 aa25.82■■□□□ 1.72
VPS53-211ENST00000571805 BLIDQ8IZY5 108 aa25.82■■□□□ 1.72
VPS53-211ENST00000571805 MNS1Q8NEH6 495 aa25.82■■□□□ 1.72
VPS53-211ENST00000571805 KAT14Q9H8E8 782 aa25.82■■□□□ 1.72
VPS53-211ENST00000571805 SH3GLB2Q9NR46 395 aa25.82■■□□□ 1.72
VPS53-211ENST00000571805 FAM205AQ6ZU69 1335 aa25.81■■□□□ 1.72
VPS53-211ENST00000571805 SPTY2D1Q68D10 685 aaPredicted RBP25.81■■□□□ 1.72
VPS53-211ENST00000571805 PPFIBP1Q86W92 1011 aa25.81■■□□□ 1.72
VPS53-211ENST00000571805 DZIP1Q86YF9 867 aaKnown RBP25.81■■□□□ 1.72
VPS53-211ENST00000571805 MRPL44Q9H9J2 332 aaKnown RBP25.81■■□□□ 1.72
VPS53-211ENST00000571805 SLC4A8Q2Y0W8 1093 aa25.81■■□□□ 1.72
VPS53-211ENST00000571805 RAD9BQ6WBX8 426 aa25.81■■□□□ 1.72
VPS53-211ENST00000571805 NAA15Q9BXJ9 866 aaKnown RBP25.81■■□□□ 1.72
VPS53-211ENST00000571805 LRRC10BA6NIK2 292 aa25.8■■□□□ 1.72
VPS53-211ENST00000571805 FILIP1LQ4L180 1135 aa25.8■■□□□ 1.72
VPS53-211ENST00000571805 STAG2Q8N3U4 1231 aa25.8■■□□□ 1.72
VPS53-211ENST00000571805 PNMA1Q8ND90 353 aa25.8■■□□□ 1.72
VPS53-211ENST00000571805 LIMA1Q9UHB6 759 aaKnown RBP25.8■■□□□ 1.72
VPS53-211ENST00000571805 LONP1P36776 959 aaKnown RBP25.8■■□□□ 1.72
VPS53-211ENST00000571805 GABPB1Q06547 395 aaPredicted RBP25.8■■□□□ 1.72
VPS53-211ENST00000571805 RRAGBQ5VZM2 374 aa25.8■■□□□ 1.72
VPS53-211ENST00000571805 CPLX3Q8WVH0 158 aa25.8■■□□□ 1.72
VPS53-211ENST00000571805 GPKOWQ92917 476 aaPredicted RBP eCLIP25.8■■□□□ 1.72
VPS53-211ENST00000571805 RWDD2AQ9UIY3 292 aa25.8■■□□□ 1.72
VPS53-211ENST00000571805 PCDHA4Q9UN74 947 aa25.8■■□□□ 1.72
VPS53-211ENST00000571805 MRFAP1Q9Y605 127 aa25.8■■□□□ 1.72
VPS53-211ENST00000571805 M0R2N6 131 aa25.79■■□□□ 1.72
VPS53-211ENST00000571805 COBLO75128 1261 aa25.79■■□□□ 1.72
VPS53-211ENST00000571805 ZPR1O75312 459 aa25.79■■□□□ 1.72
VPS53-211ENST00000571805 DYNLL2Q96FJ2 89 aa25.79■■□□□ 1.72
VPS53-211ENST00000571805 PKNOX2Q96KN3 472 aa25.79■■□□□ 1.72
VPS53-211ENST00000571805 ADGRG1Q9Y653 693 aa25.79■■□□□ 1.72
VPS53-211ENST00000571805 MFAP3LO75121 409 aa25.78■■□□□ 1.72
VPS53-211ENST00000571805 CCDC175P0C221 793 aa25.78■■□□□ 1.72
VPS53-211ENST00000571805 NT5C2P49902 561 aa25.78■■□□□ 1.72
VPS53-211ENST00000571805 ITIH6Q6UXX5 1313 aa25.78■■□□□ 1.72
VPS53-211ENST00000571805 GRM4Q14833 912 aa25.78■■□□□ 1.72
VPS53-211ENST00000571805 KARSQ15046 597 aaKnown RBP25.78■■□□□ 1.72
VPS53-211ENST00000571805 KRT31Q15323 416 aa25.78■■□□□ 1.72
VPS53-211ENST00000571805 TYW1BQ6NUM6 668 aa25.78■■□□□ 1.72
VPS53-211ENST00000571805 MAD2L2Q9UI95 211 aa25.78■■□□□ 1.72
VPS53-211ENST00000571805 GYPCP04921 128 aa25.77■■□□□ 1.72
VPS53-211ENST00000571805 FECHP22830 423 aa25.77■■□□□ 1.72
VPS53-211ENST00000571805 CASP14P31944 242 aa25.77■■□□□ 1.72
VPS53-211ENST00000571805 SLC35G1Q2M3R5 365 aa25.77■■□□□ 1.72
VPS53-211ENST00000571805 ZNF658Q5TYW1 1059 aaPredicted RBP25.77■■□□□ 1.72
VPS53-211ENST00000571805 SH3RF3Q8TEJ3 882 aaPredicted RBP25.77■■□□□ 1.72
VPS53-211ENST00000571805 FHOD1Q9Y613 1164 aa25.77■■□□□ 1.72
VPS53-211ENST00000571805 ROBO3Q96MS0 1386 aa25.77■■□□□ 1.72
VPS53-211ENST00000571805 SBF2Q86WG5 1849 aa25.77■■□□□ 1.72
VPS53-211ENST00000571805 GNPATO15228 680 aa25.77■■□□□ 1.72
VPS53-211ENST00000571805 CDC25AP30304 524 aa25.77■■□□□ 1.72
VPS53-211ENST00000571805 BMS1Q14692 1282 aaKnown RBP25.77■■□□□ 1.72
VPS53-211ENST00000571805 AMIGO3Q86WK7 504 aa25.77■■□□□ 1.72
VPS53-211ENST00000571805 USP5P45974 858 aa25.76■■□□□ 1.71
VPS53-211ENST00000571805 RASGRP4Q8TDF6 673 aa25.76■■□□□ 1.71
VPS53-211ENST00000571805 LTBP4Q8N2S1 1624 aa25.76■■□□□ 1.71
VPS53-211ENST00000571805 RPN1P04843 607 aaKnown RBP25.76■■□□□ 1.71
VPS53-211ENST00000571805 LDHBP07195 334 aaKnown RBP25.76■■□□□ 1.71
VPS53-211ENST00000571805 FXR1P51114 621 aaKnown RBP eCLIP25.76■■□□□ 1.71
VPS53-211ENST00000571805 PAK1Q13153 545 aa25.76■■□□□ 1.71
VPS53-211ENST00000571805 SLC51AQ86UW1 340 aa25.76■■□□□ 1.71
VPS53-211ENST00000571805 TNRC6CQ9HCJ0 1690 aaKnown RBP25.75■■□□□ 1.71
VPS53-211ENST00000571805 IGSF3O75054 1194 aa25.75■■□□□ 1.71
VPS53-211ENST00000571805 ZRANB2O95218 330 aaKnown RBP eCLIP25.75■■□□□ 1.71
VPS53-211ENST00000571805 TPM1P09493 284 aa25.75■■□□□ 1.71
VPS53-211ENST00000571805 CCT6AP40227 531 aaKnown RBP25.75■■□□□ 1.71
VPS53-211ENST00000571805 CCDC51Q96ER9 411 aa25.75■■□□□ 1.71
VPS53-211ENST00000571805 IRX2Q9BZI1 471 aaPredicted RBP25.75■■□□□ 1.71
VPS53-211ENST00000571805 TCP11L1Q9NUJ3 509 aa25.75■■□□□ 1.71
VPS53-211ENST00000571805 USP17L3A6NCW0 530 aa25.75■■□□□ 1.71
VPS53-211ENST00000571805 USP17L4A6NCW7 530 aa25.75■■□□□ 1.71
VPS53-211ENST00000571805 RASGRP2Q7LDG7 609 aa25.75■■□□□ 1.71
VPS53-211ENST00000571805 USP17L1Q7RTZ2 530 aa25.75■■□□□ 1.71
VPS53-211ENST00000571805 CNGA4Q8IV77 575 aa25.75■■□□□ 1.71
VPS53-211ENST00000571805 WDR66Q8TBY9 1149 aa25.75■■□□□ 1.71
VPS53-211ENST00000571805 NELFBQ8WX92 580 aa25.75■■□□□ 1.71
VPS53-211ENST00000571805 RMND1Q9NWS8 449 aa25.75■■□□□ 1.71
VPS53-211ENST00000571805 PCDHA6Q9UN73 950 aa25.75■■□□□ 1.71
VPS53-211ENST00000571805 PCDHA8Q9Y5H6 950 aa25.75■■□□□ 1.71
VPS53-211ENST00000571805 GNAQP50148 359 aa25.74■■□□□ 1.71
VPS53-211ENST00000571805 ARHGEF1Q92888 912 aaKnown RBP25.74■■□□□ 1.71
VPS53-211ENST00000571805 A0A0U1RQJ8 604 aa25.74■■□□□ 1.71
VPS53-211ENST00000571805 CYTH3O43739 400 aa25.74■■□□□ 1.71
VPS53-211ENST00000571805 PPP2R3AQ06190 1150 aa25.74■■□□□ 1.71
VPS53-211ENST00000571805 GRIK5Q16478 980 aa25.74■■□□□ 1.71
VPS53-211ENST00000571805 NAALADL2Q58DX5 795 aa25.74■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms