RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 ROBO3Q96MS0 1386 aa15.28■□□□□ 0.04
SHMT2-222ENST00000555774 ZRANB2O95218 330 aaKnown RBP eCLIP15.27■□□□□ 0.041e-7■□□□□ 9.4
SHMT2-222ENST00000555774 STX17P56962 302 aa15.27■□□□□ 0.04
SHMT2-222ENST00000555774 PPP2R3AQ06190 1150 aa15.27■□□□□ 0.04
SHMT2-222ENST00000555774 FAM47AQ5JRC9 791 aa15.27■□□□□ 0.04
SHMT2-222ENST00000555774 ZNF658Q5TYW1 1059 aaPredicted RBP15.27■□□□□ 0.04
SHMT2-222ENST00000555774 TBC1D9BQ66K14 1250 aa15.27■□□□□ 0.04
SHMT2-222ENST00000555774 GALNT17Q6IS24 598 aa15.27■□□□□ 0.04
SHMT2-222ENST00000555774 BLIDQ8IZY5 108 aa15.27■□□□□ 0.04
SHMT2-222ENST00000555774 KAT14Q9H8E8 782 aa15.27■□□□□ 0.04
SHMT2-222ENST00000555774 NARFQ9UHQ1 456 aa15.27■□□□□ 0.04
SHMT2-222ENST00000555774 CTNND2Q9UQB3 1225 aa15.27■□□□□ 0.04
SHMT2-222ENST00000555774 ADGRG1Q9Y653 693 aa15.27■□□□□ 0.04
SHMT2-222ENST00000555774 PAK1Q13153 545 aa15.27■□□□□ 0.03
SHMT2-222ENST00000555774 NOM1Q5C9Z4 860 aaKnown RBP15.27■□□□□ 0.03
SHMT2-222ENST00000555774 RCSD1Q6JBY9 416 aa15.27■□□□□ 0.03
SHMT2-222ENST00000555774 RASGRP2Q7LDG7 609 aa15.27■□□□□ 0.03
SHMT2-222ENST00000555774 DAGLBQ8NCG7 672 aa15.27■□□□□ 0.03
SHMT2-222ENST00000555774 PCDHA4Q9UN74 947 aa15.27■□□□□ 0.03
SHMT2-222ENST00000555774 FHOD1Q9Y613 1164 aa15.27■□□□□ 0.03
SHMT2-222ENST00000555774 MYH13Q9UKX3 1938 aa15.27■□□□□ 0.03
SHMT2-222ENST00000555774 NMT2O60551 498 aa15.26■□□□□ 0.03
SHMT2-222ENST00000555774 MYL1P05976 194 aa15.26■□□□□ 0.03
SHMT2-222ENST00000555774 KLRK1P26718 216 aa15.26■□□□□ 0.03
SHMT2-222ENST00000555774 RRAGBQ5VZM2 374 aa15.26■□□□□ 0.03
SHMT2-222ENST00000555774 RSRC2Q7L4I2 434 aaKnown RBP15.26■□□□□ 0.03
SHMT2-222ENST00000555774 SOWAHDA6NJG2 315 aa15.26■□□□□ 0.03
SHMT2-222ENST00000555774 KCNQ2O43526 872 aa15.26■□□□□ 0.03
SHMT2-222ENST00000555774 CASP1P29466 404 aa15.26■□□□□ 0.03
SHMT2-222ENST00000555774 PRDX5P30044 214 aa15.26■□□□□ 0.03
SHMT2-222ENST00000555774 MCM7P33993 719 aa15.26■□□□□ 0.03
SHMT2-222ENST00000555774 TUBB4BP68371 445 aa15.26■□□□□ 0.03
SHMT2-222ENST00000555774 GRM4Q14833 912 aa15.26■□□□□ 0.03
SHMT2-222ENST00000555774 TERF2Q15554 542 aa15.26■□□□□ 0.03
SHMT2-222ENST00000555774 TMTC1Q8IUR5 882 aa15.26■□□□□ 0.03
SHMT2-222ENST00000555774 C4orf32Q8N8J7 132 aa15.26■□□□□ 0.03
SHMT2-222ENST00000555774 CCDC148Q8NFR7 591 aa15.26■□□□□ 0.03
SHMT2-222ENST00000555774 RABGGTAQ92696 567 aa15.26■□□□□ 0.03
SHMT2-222ENST00000555774 SETDB2Q96T68 719 aa15.26■□□□□ 0.03
SHMT2-222ENST00000555774 MRPL44Q9H9J2 332 aaKnown RBP15.26■□□□□ 0.03
SHMT2-222ENST00000555774 TCP11L1Q9NUJ3 509 aa15.26■□□□□ 0.03
SHMT2-222ENST00000555774 TTF2Q9UNY4 1162 aaKnown RBP15.26■□□□□ 0.03
SHMT2-222ENST00000555774 KIF5CO60282 957 aa15.25■□□□□ 0.03
SHMT2-222ENST00000555774 CYP2D6P10635 497 aa15.25■□□□□ 0.03
SHMT2-222ENST00000555774 KRT31Q15323 416 aa15.25■□□□□ 0.03
SHMT2-222ENST00000555774 IL17AQ16552 155 aa15.25■□□□□ 0.03
SHMT2-222ENST00000555774 C12orf60Q5U649 245 aa15.25■□□□□ 0.03
SHMT2-222ENST00000555774 JAKMIP3Q5VZ66 844 aa15.25■□□□□ 0.03
SHMT2-222ENST00000555774 RAD9BQ6WBX8 426 aa15.25■□□□□ 0.03
SHMT2-222ENST00000555774 DZIP1Q86YF9 867 aaKnown RBP15.25■□□□□ 0.03
SHMT2-222ENST00000555774 DESI2Q9BSY9 194 aa15.25■□□□□ 0.03
SHMT2-222ENST00000555774 IRS2Q9Y4H2 1338 aa15.25■□□□□ 0.03
SHMT2-222ENST00000555774 LAD1O00515 517 aa15.25■□□□□ 0.03
SHMT2-222ENST00000555774 RPS6KA4O75676 772 aa15.25■□□□□ 0.03
SHMT2-222ENST00000555774 RPN1P04843 607 aaKnown RBP15.25■□□□□ 0.03
SHMT2-222ENST00000555774 PNMA6AP0CW24 399 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-222ENST00000555774 BICDL1Q6ZP65 573 aa15.25■□□□□ 0.03
SHMT2-222ENST00000555774 NBPF5PQ86XG9 351 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-222ENST00000555774 AMOTL1Q8IY63 956 aa15.25■□□□□ 0.03
SHMT2-222ENST00000555774 SMYD4Q8IYR2 804 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-222ENST00000555774 GOLGA1Q92805 767 aa15.25■□□□□ 0.03
SHMT2-222ENST00000555774 MCM9Q9NXL9 1143 aa15.25■□□□□ 0.03
SHMT2-222ENST00000555774 TFCP2L1Q9NZI6 479 aa15.25■□□□□ 0.03
SHMT2-222ENST00000555774 MKRN1Q9UHC7 482 aaKnown RBP15.25■□□□□ 0.03
SHMT2-222ENST00000555774 GYPCP04921 128 aa15.24■□□□□ 0.03
SHMT2-222ENST00000555774 COPB1P53618 953 aaKnown RBP15.24■□□□□ 0.03
SHMT2-222ENST00000555774 GSTO1P78417 241 aa15.24■□□□□ 0.03
SHMT2-222ENST00000555774 TPTE2Q6XPS3 522 aa15.24■□□□□ 0.03
SHMT2-222ENST00000555774 WDR66Q8TBY9 1149 aa15.24■□□□□ 0.03
SHMT2-222ENST00000555774 CCDC12Q8WUD4 166 aaPredicted RBP15.24■□□□□ 0.03
SHMT2-222ENST00000555774 LZTS2Q9BRK4 669 aa15.24■□□□□ 0.03
SHMT2-222ENST00000555774 CCDC88AQ3V6T2 1871 aa15.24■□□□□ 0.03
SHMT2-222ENST00000555774 H7C1D1 291 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 M0R2N6 131 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 N4BP3O15049 544 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 CASP14P31944 242 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 KCNB1Q14721 858 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 MTF1Q14872 753 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 KARSQ15046 597 aaKnown RBP15.23■□□□□ 0.03
SHMT2-222ENST00000555774 TCP11X2Q5H9J9 407 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 WWC2Q6AWC2 1192 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 CERS3Q8IU89 383 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 PNMA1Q8ND90 353 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 NELFBQ8WX92 580 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 MTRQ99707 1265 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 BLZF1Q9H2G9 400 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 DISC1Q9NRI5 854 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 TAF1P21675 1872 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 STAT6P42226 847 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 TFAP4Q01664 338 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 EVX2Q03828 476 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 ZNF771Q7L3S4 317 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-222ENST00000555774 CEP112Q8N8E3 955 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 MAGEF1Q9HAY2 307 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 MYO1AQ9UBC5 1043 aa15.23■□□□□ 0.03
SHMT2-222ENST00000555774 CCDC194A0A1B0GVG4 234 aa15.22■□□□□ 0.03
SHMT2-222ENST00000555774 KCNJ18B7U540 433 aa15.22■□□□□ 0.03
SHMT2-222ENST00000555774 PRPHP41219 470 aa15.22■□□□□ 0.03
SHMT2-222ENST00000555774 KCNJ12Q14500 433 aa15.22■□□□□ 0.03
SHMT2-222ENST00000555774 CYP26C1Q6V0L0 522 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms