RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 USP17L12C9JPN9 530 aa10.2□□□□□ -0.78
USP28-215ENST00000545608 USP17L21D6R901 530 aa10.2□□□□□ -0.78
USP28-215ENST00000545608 HOXC6P09630 235 aa10.2□□□□□ -0.78
USP28-215ENST00000545608 COL6A1P12109 1028 aa10.2□□□□□ -0.78
USP28-215ENST00000545608 SYN1P17600 705 aa10.2□□□□□ -0.78
USP28-215ENST00000545608 CDK8P49336 464 aa10.2□□□□□ -0.78
USP28-215ENST00000545608 GRB14Q14449 540 aa10.2□□□□□ -0.78
USP28-215ENST00000545608 UBE3CQ15386 1083 aa10.2□□□□□ -0.78
USP28-215ENST00000545608 MFSD14CQ5VZR4 134 aa10.2□□□□□ -0.78
USP28-215ENST00000545608 GDF15Q99988 308 aa10.2□□□□□ -0.78
USP28-215ENST00000545608 MOV10L1Q9BXT6 1211 aaKnown RBP10.2□□□□□ -0.78
USP28-215ENST00000545608 LRRCC1Q9C099 1032 aa10.2□□□□□ -0.78
USP28-215ENST00000545608 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.2□□□□□ -0.78
USP28-215ENST00000545608 PUS7LQ9H0K6 701 aaKnown RBP10.2□□□□□ -0.78
USP28-215ENST00000545608 HOXC10Q9NYD6 342 aa10.2□□□□□ -0.78
USP28-215ENST00000545608 TMX2Q9Y320 296 aa10.2□□□□□ -0.78
USP28-215ENST00000545608 A0A1W2PPC1 479 aa10.19□□□□□ -0.78
USP28-215ENST00000545608 SOX1O00570 391 aaPredicted RBP10.19□□□□□ -0.78
USP28-215ENST00000545608 IGHA2P01877 340 aa10.19□□□□□ -0.78
USP28-215ENST00000545608 CYP2C19P33261 490 aa10.19□□□□□ -0.78
USP28-215ENST00000545608 ATP2B2Q01814 1243 aa10.19□□□□□ -0.78
USP28-215ENST00000545608 SPICE1Q8N0Z3 855 aa10.19□□□□□ -0.78
USP28-215ENST00000545608 TRPV1Q8NER1 839 aa10.19□□□□□ -0.78
USP28-215ENST00000545608 CCDC17Q96LX7 622 aa10.19□□□□□ -0.78
USP28-215ENST00000545608 TANGO6Q9C0B7 1094 aa10.19□□□□□ -0.78
USP28-215ENST00000545608 SPATC1LQ9H0A9 340 aa10.19□□□□□ -0.78
USP28-215ENST00000545608 VCPKMTQ9H867 229 aa10.19□□□□□ -0.78
USP28-215ENST00000545608 SLC4A4Q9Y6R1 1079 aa10.19□□□□□ -0.78
USP28-215ENST00000545608 IVNS1ABPQ9Y6Y0 642 aa10.19□□□□□ -0.78
USP28-215ENST00000545608 DDX60LQ5H9U9 1706 aaKnown RBP10.19□□□□□ -0.78
USP28-215ENST00000545608 GALR2O43603 387 aaPredicted RBP10.18□□□□□ -0.78
USP28-215ENST00000545608 ERCC3P19447 782 aa10.18□□□□□ -0.78
USP28-215ENST00000545608 ADORA2AP29274 412 aa10.18□□□□□ -0.78
USP28-215ENST00000545608 CNGA1P29973 690 aa10.18□□□□□ -0.78
USP28-215ENST00000545608 BMP8BP34820 402 aa10.18□□□□□ -0.78
USP28-215ENST00000545608 ICA1Q05084 483 aa10.18□□□□□ -0.78
USP28-215ENST00000545608 LRRC26Q2I0M4 334 aa10.18□□□□□ -0.78
USP28-215ENST00000545608 CTR9Q6PD62 1173 aa10.18□□□□□ -0.78
USP28-215ENST00000545608 C16orf86Q6ZW13 317 aa10.18□□□□□ -0.78
USP28-215ENST00000545608 LPAR1Q92633 364 aa10.18□□□□□ -0.78
USP28-215ENST00000545608 ATG4CQ96DT6 458 aa10.18□□□□□ -0.78
USP28-215ENST00000545608 LRCH3Q96II8 777 aa10.18□□□□□ -0.78
USP28-215ENST00000545608 ARHGEF10LQ9HCE6 1279 aa10.18□□□□□ -0.78
USP28-215ENST00000545608 ALPK3Q96L96 1907 aa10.17□□□□□ -0.78
USP28-215ENST00000545608 STRNO43815 780 aa10.17□□□□□ -0.78
USP28-215ENST00000545608 COBLO75128 1261 aa10.17□□□□□ -0.78
USP28-215ENST00000545608 FLOT1O75955 427 aa10.17□□□□□ -0.78
USP28-215ENST00000545608 EEF2P13639 858 aaKnown RBP10.17□□□□□ -0.78
USP28-215ENST00000545608 MAGEA10P43363 369 aaPredicted RBP10.17□□□□□ -0.78
USP28-215ENST00000545608 PLS1Q14651 629 aa10.17□□□□□ -0.78
USP28-215ENST00000545608 ZSCAN25Q6NSZ9 544 aa10.17□□□□□ -0.78
USP28-215ENST00000545608 DPP9Q86TI2 863 aa10.17□□□□□ -0.78
USP28-215ENST00000545608 GPIHBP1Q8IV16 184 aa10.17□□□□□ -0.78
USP28-215ENST00000545608 AMOTL1Q8IY63 956 aa10.17□□□□□ -0.78
USP28-215ENST00000545608 SHCBP1Q8NEM2 672 aa10.17□□□□□ -0.78
USP28-215ENST00000545608 STRBPQ96SI9 672 aaKnown RBP10.17□□□□□ -0.78
USP28-215ENST00000545608 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.17□□□□□ -0.78
USP28-215ENST00000545608 DCTPP1Q9H773 170 aa10.17□□□□□ -0.78
USP28-215ENST00000545608 ECHDC1Q9NTX5 307 aa10.17□□□□□ -0.78
USP28-215ENST00000545608 DDX20Q9UHI6 824 aaKnown RBP10.17□□□□□ -0.78
USP28-215ENST00000545608 NAV1Q8NEY1 1877 aa10.17□□□□□ -0.78
USP28-215ENST00000545608 GSG1L2A8MUP6 293 aa10.16□□□□□ -0.78
USP28-215ENST00000545608 DPYSL4O14531 572 aa10.16□□□□□ -0.78
USP28-215ENST00000545608 WDR46O15213 610 aaKnown RBP10.16□□□□□ -0.78
USP28-215ENST00000545608 CYBAP13498 195 aa10.16□□□□□ -0.78
USP28-215ENST00000545608 DSG2Q14126 1118 aa10.16□□□□□ -0.78
USP28-215ENST00000545608 TMEM132BQ14DG7 1078 aa10.16□□□□□ -0.78
USP28-215ENST00000545608 PRAMEF19Q5SWL8 479 aa10.16□□□□□ -0.78
USP28-215ENST00000545608 TSHZ3Q63HK5 1081 aa10.16□□□□□ -0.78
USP28-215ENST00000545608 NCAPG2Q86XI2 1143 aa10.16□□□□□ -0.78
USP28-215ENST00000545608 STK11IPQ8N1F8 1099 aa10.16□□□□□ -0.78
USP28-215ENST00000545608 MB21D1Q8N884 522 aa10.16□□□□□ -0.78
USP28-215ENST00000545608 KBTBD3Q8NAB2 608 aa10.16□□□□□ -0.78
USP28-215ENST00000545608 OSBP2Q969R2 916 aa10.16□□□□□ -0.78
USP28-215ENST00000545608 DDRGK1Q96HY6 314 aa10.16□□□□□ -0.78
USP28-215ENST00000545608 SENP6Q9GZR1 1112 aaPredicted RBP10.16□□□□□ -0.78
USP28-215ENST00000545608 SH2D4AQ9H788 454 aa10.16□□□□□ -0.78
USP28-215ENST00000545608 KANSL2Q9H9L4 492 aa10.16□□□□□ -0.78
USP28-215ENST00000545608 FBXO28Q9NVF7 368 aa10.16□□□□□ -0.78
USP28-215ENST00000545608 ADAMTS5Q9UNA0 930 aa10.16□□□□□ -0.78
USP28-215ENST00000545608 HAX1O00165 279 aa10.15□□□□□ -0.78
USP28-215ENST00000545608 MSCO60682 206 aa10.15□□□□□ -0.78
USP28-215ENST00000545608 MLLT3P42568 568 aaPredicted RBP10.15□□□□□ -0.78
USP28-215ENST00000545608 FOXK1P85037 733 aa10.15□□□□□ -0.78
USP28-215ENST00000545608 SBK1Q52WX2 424 aa10.15□□□□□ -0.78
USP28-215ENST00000545608 ANO1Q5XXA6 986 aa10.15□□□□□ -0.78
USP28-215ENST00000545608 OLFML2BQ68BL8 750 aa10.15□□□□□ -0.78
USP28-215ENST00000545608 MROH8Q9H579 483 aa10.15□□□□□ -0.78
USP28-215ENST00000545608 ARPP21Q9UBL0 812 aaPredicted RBP10.15□□□□□ -0.78
USP28-215ENST00000545608 MINDY4BA8MYZ0 360 aa10.14□□□□□ -0.79
USP28-215ENST00000545608 DNM1LO00429 736 aa10.14□□□□□ -0.79
USP28-215ENST00000545608 RNF113AO15541 343 aaKnown RBP10.14□□□□□ -0.79
USP28-215ENST00000545608 RAD21O60216 631 aa10.14□□□□□ -0.79
USP28-215ENST00000545608 RASA1P20936 1047 aa10.14□□□□□ -0.79
USP28-215ENST00000545608 ATN1P54259 1190 aaPredicted RBP10.14□□□□□ -0.79
USP28-215ENST00000545608 MDM2Q00987 491 aaPredicted RBP10.14□□□□□ -0.79
USP28-215ENST00000545608 FAM83BQ5T0W9 1011 aa10.14□□□□□ -0.79
USP28-215ENST00000545608 GJC2Q5T442 439 aaPredicted RBP10.14□□□□□ -0.79
USP28-215ENST00000545608 ABRAQ8N0Z2 381 aa10.14□□□□□ -0.79
USP28-215ENST00000545608 KRI1Q8N9T8 703 aaKnown RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms