RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-216ENST00000534389 PANK3Q9H999 370 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 PRKAG3Q9UGI9 489 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 FBXL21Q9UKT6 434 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 KCNH3Q9ULD8 1083 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 LEMD3Q9Y2U8 911 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 RTEL1-TNFRSF6BF6WH68 1400 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 UACAQ9BZF9 1416 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 PRR36Q9H6K5 1346 aa3.95□□□□□ -1.78
CSDE1-216ENST00000534389 CCDC18Q5T9S5 1454 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 CYP26A1O43174 497 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 DYNC1LI2O43237 492 aaPredicted RBP3.94□□□□□ -1.78
CSDE1-216ENST00000534389 ZNF500O60304 480 aaPredicted RBP3.94□□□□□ -1.78
CSDE1-216ENST00000534389 KIF20AO95235 890 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 IGHDP01880 384 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 TP53P04637 393 aaPredicted RBP3.94□□□□□ -1.78
CSDE1-216ENST00000534389 NME1P15531 152 aaKnown RBP3.94□□□□□ -1.78
CSDE1-216ENST00000534389 ITIH2P19823 946 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 FSTP19883 344 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 POLR2BP30876 1174 aaKnown RBP3.94□□□□□ -1.78
CSDE1-216ENST00000534389 DDIT3P35638 169 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 ETFBP38117 255 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 GRIK1P39086 918 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 CCNFP41002 786 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 RNF4P78317 190 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 RING1Q06587 406 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 SLBPQ14493 270 aaKnown RBP eCLIP3.94□□□□□ -1.78
CSDE1-216ENST00000534389 FXNQ16595 210 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 RSPO4Q2I0M5 234 aaPredicted RBP3.94□□□□□ -1.78
CSDE1-216ENST00000534389 CLEC16AQ2KHT3 1053 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 SFRP5Q5T4F7 317 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 RNF43Q68DV7 783 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 UBE3DQ7Z6J8 389 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 ADAT2Q7Z6V5 191 aaKnown RBP3.94□□□□□ -1.78
CSDE1-216ENST00000534389 CCDC144CPQ8IYA2 1237 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 SLFN12Q8IYM2 578 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 BAHD1Q8TBE0 780 aaPredicted RBP3.94□□□□□ -1.78
CSDE1-216ENST00000534389 HNRNPLLQ8WVV9 542 aaKnown RBP3.94□□□□□ -1.78
CSDE1-216ENST00000534389 ANP32BQ92688 251 aaKnown RBP3.94□□□□□ -1.78
CSDE1-216ENST00000534389 SLC6A18Q96N87 628 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 GMLQ99445 158 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 CHMP4AQ9BY43 222 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 GSX1Q9H4S2 264 aaPredicted RBP3.94□□□□□ -1.78
CSDE1-216ENST00000534389 ST7Q9NRC1 585 aa3.94□□□□□ -1.78
CSDE1-216ENST00000534389 BCORL1Q5H9F3 1711 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.93□□□□□ -1.78
CSDE1-216ENST00000534389 SSU72P8A0A1W2PR75 194 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 RGS13O14921 159 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 LETM1O95202 739 aaPredicted RBP3.93□□□□□ -1.78
CSDE1-216ENST00000534389 IGLV1-40P01703 118 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 NAT2P11245 290 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 GIPRP48546 466 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 CBX1P83916 185 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 NKAPLQ5M9Q1 402 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 NOL9Q5SY16 702 aaKnown RBP3.93□□□□□ -1.78
CSDE1-216ENST00000534389 CDCP2Q5VXM1 449 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 OGFOD3Q6PK18 319 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 VHLLQ6RSH7 139 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 ZNF765Q7L2R6 523 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 ZAR1Q86SH2 424 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 TTC6Q86TZ1 520 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 CERS3Q8IU89 383 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 SYTL4Q96C24 671 aaPredicted RBP3.93□□□□□ -1.78
CSDE1-216ENST00000534389 SHDQ96IW2 340 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 ZNF512BQ96KM6 892 aaPredicted RBP3.93□□□□□ -1.78
CSDE1-216ENST00000534389 PSMG3-AS1Q96PY0 264 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 DUSP23Q9BVJ7 150 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 SEMA6BQ9H3T3 888 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 PHAXQ9H814 394 aaKnown RBP3.93□□□□□ -1.78
CSDE1-216ENST00000534389 CNNM2Q9H8M5 875 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 CHMP5Q9NZZ3 219 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 LRP2BPQ9P2M1 347 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 KCNG1Q9UIX4 513 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 CEP131Q9UPN4 1083 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 SUGT1Q9Y2Z0 365 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 HFM1A2PYH4 1435 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 NAIPQ13075 1403 aa3.93□□□□□ -1.78
CSDE1-216ENST00000534389 PTPN23Q9H3S7 1636 aa3.92□□□□□ -1.78
CSDE1-216ENST00000534389 FAM170BA6NMN3 283 aa3.92□□□□□ -1.78
CSDE1-216ENST00000534389 MEIS3P2A8K0S8 358 aa3.92□□□□□ -1.78
CSDE1-216ENST00000534389 AGRPO00253 132 aa3.92□□□□□ -1.78
CSDE1-216ENST00000534389 DYRK3O43781 588 aa3.92□□□□□ -1.78
CSDE1-216ENST00000534389 IGSF3O75054 1194 aa3.92□□□□□ -1.78
CSDE1-216ENST00000534389 LEFTY1O75610 366 aa3.92□□□□□ -1.78
CSDE1-216ENST00000534389 H2AFB1P0C5Y9 115 aa3.92□□□□□ -1.78
CSDE1-216ENST00000534389 H2AFB2P0C5Z0 115 aa3.92□□□□□ -1.78
CSDE1-216ENST00000534389 CAPN2P17655 700 aa3.92□□□□□ -1.78
CSDE1-216ENST00000534389 NCLP19338 710 aaKnown RBP3.92□□□□□ -1.78
CSDE1-216ENST00000534389 NTF4P34130 210 aa3.92□□□□□ -1.78
CSDE1-216ENST00000534389 CAP2P40123 477 aa3.92□□□□□ -1.78
CSDE1-216ENST00000534389 SLC7A5Q01650 507 aa3.92□□□□□ -1.78
CSDE1-216ENST00000534389 CCDC173Q0VFZ6 552 aa3.92□□□□□ -1.78
CSDE1-216ENST00000534389 IFRD2Q12894 506 aaPredicted RBP3.92□□□□□ -1.78
CSDE1-216ENST00000534389 BECN1Q14457 450 aa3.92□□□□□ -1.78
CSDE1-216ENST00000534389 TCEAL1Q15170 157 aa3.92□□□□□ -1.78
CSDE1-216ENST00000534389 NBPF12Q5TAG4 269 aaPredicted RBP3.92□□□□□ -1.78
CSDE1-216ENST00000534389 CDKAL1Q5VV42 579 aa3.92□□□□□ -1.78
CSDE1-216ENST00000534389 TDRD10Q5VZ19 366 aaKnown RBP3.92□□□□□ -1.78
CSDE1-216ENST00000534389 HEATR6Q6AI08 1181 aaKnown RBP3.92□□□□□ -1.78
CSDE1-216ENST00000534389 SASS6Q6UVJ0 657 aa3.92□□□□□ -1.78
CSDE1-216ENST00000534389 UNC5AQ6ZN44 842 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms