RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 MOV10L1Q9BXT6 1211 aaKnown RBP24.46■■□□□ 1.51
VPS28-206ENST00000526734 MROH8Q9H579 483 aa24.46■■□□□ 1.51
VPS28-206ENST00000526734 PAK6Q9NQU5 681 aaPredicted RBP24.46■■□□□ 1.51
VPS28-206ENST00000526734 PPP1R9AQ9ULJ8 1098 aa24.46■■□□□ 1.51
VPS28-206ENST00000526734 ADAMTS5Q9UNA0 930 aa24.46■■□□□ 1.51
VPS28-206ENST00000526734 TSPY2A6NKD2 308 aa24.45■■□□□ 1.5
VPS28-206ENST00000526734 FGAP02671 866 aa24.45■■□□□ 1.5
VPS28-206ENST00000526734 COPB2P35606 906 aa24.45■■□□□ 1.5
VPS28-206ENST00000526734 NT5C2P49902 561 aa24.45■■□□□ 1.5
VPS28-206ENST00000526734 GRB14Q14449 540 aa24.45■■□□□ 1.5
VPS28-206ENST00000526734 FAM83BQ5T0W9 1011 aa24.45■■□□□ 1.5
VPS28-206ENST00000526734 ZNF589Q86UQ0 364 aaPredicted RBP24.45■■□□□ 1.5
VPS28-206ENST00000526734 U2AF1L4Q8WU68 220 aaKnown RBP24.45■■□□□ 1.5
VPS28-206ENST00000526734 TRIB2Q92519 343 aa24.45■■□□□ 1.5
VPS28-206ENST00000526734 DOCK3Q8IZD9 2030 aa24.45■■□□□ 1.5
VPS28-206ENST00000526734 PLXNB2O15031 1838 aa24.45■■□□□ 1.5
VPS28-206ENST00000526734 RPTORQ8N122 1335 aa24.44■■□□□ 1.5
VPS28-206ENST00000526734 RLFQ13129 1914 aa24.44■■□□□ 1.5
VPS28-206ENST00000526734 SGPL1O95470 568 aa24.44■■□□□ 1.5
VPS28-206ENST00000526734 SLC25A27O95847 323 aa24.44■■□□□ 1.5
VPS28-206ENST00000526734 NDUFB10O96000 172 aa24.44■■□□□ 1.5
VPS28-206ENST00000526734 HOXC6P09630 235 aa24.44■■□□□ 1.5
VPS28-206ENST00000526734 FGRP09769 529 aa24.44■■□□□ 1.5
VPS28-206ENST00000526734 CTDSPL2Q05D32 466 aa24.44■■□□□ 1.5
VPS28-206ENST00000526734 SHISA4Q96DD7 197 aa24.44■■□□□ 1.5
VPS28-206ENST00000526734 XRN2Q9H0D6 950 aaKnown RBP eCLIP24.44■■□□□ 1.53e-6■■□□□ 14.1
VPS28-206ENST00000526734 HMX1Q9NP08 348 aaPredicted RBP24.44■■□□□ 1.5
VPS28-206ENST00000526734 MAP3K21Q5TCX8 1036 aa24.43■■□□□ 1.5
VPS28-206ENST00000526734 PRPF38BQ5VTL8 546 aaKnown RBP24.43■■□□□ 1.5
VPS28-206ENST00000526734 ABRAQ8N0Z2 381 aa24.43■■□□□ 1.5
VPS28-206ENST00000526734 SLF1Q9BQI6 1058 aa24.43■■□□□ 1.5
VPS28-206ENST00000526734 VWA5AO00534 786 aa24.42■■□□□ 1.5
VPS28-206ENST00000526734 PDE4AP27815 886 aa24.42■■□□□ 1.5
VPS28-206ENST00000526734 FAM47AQ5JRC9 791 aa24.42■■□□□ 1.5
VPS28-206ENST00000526734 TTC22Q5TAA0 569 aa24.42■■□□□ 1.5
VPS28-206ENST00000526734 SLC5A4Q9NY91 659 aa24.42■■□□□ 1.5
VPS28-206ENST00000526734 ZNF236Q9UL36 1845 aa24.42■■□□□ 1.5
VPS28-206ENST00000526734 PDE4DIPQ5VU43 2346 aa24.41■■□□□ 1.5
VPS28-206ENST00000526734 ERCC3P19447 782 aa24.41■■□□□ 1.5
VPS28-206ENST00000526734 PLS1Q14651 629 aa24.41■■□□□ 1.5
VPS28-206ENST00000526734 CWC27Q6UX04 472 aaKnown RBP24.41■■□□□ 1.5
VPS28-206ENST00000526734 PRPF38AQ8NAV1 312 aaKnown RBP24.41■■□□□ 1.5
VPS28-206ENST00000526734 RNF41Q9H4P4 317 aaPredicted RBP24.41■■□□□ 1.5
VPS28-206ENST00000526734 FBXO28Q9NVF7 368 aa24.41■■□□□ 1.5
VPS28-206ENST00000526734 FEM1BQ9UK73 627 aa24.41■■□□□ 1.5
VPS28-206ENST00000526734 CENPFP49454 3210 aa24.41■■□□□ 1.5
VPS28-206ENST00000526734 RANBP6O60518 1105 aaKnown RBP24.4■■□□□ 1.5
VPS28-206ENST00000526734 TMEM132BQ14DG7 1078 aa24.4■■□□□ 1.5
VPS28-206ENST00000526734 MFSD14CQ5VZR4 134 aa24.4■■□□□ 1.5
VPS28-206ENST00000526734 SAMD1Q6SPF0 538 aaPredicted RBP24.4■■□□□ 1.5
VPS28-206ENST00000526734 RIOX2Q8IUF8 465 aa24.4■■□□□ 1.5
VPS28-206ENST00000526734 GMCL1Q96IK5 515 aa24.4■■□□□ 1.5
VPS28-206ENST00000526734 DEFB118Q96PH6 123 aa24.4■■□□□ 1.5
VPS28-206ENST00000526734 CRISPLD2Q9H0B8 497 aa24.4■■□□□ 1.5
VPS28-206ENST00000526734 PARP14Q460N5 1801 aa24.4■■□□□ 1.5
VPS28-206ENST00000526734 RAD50Q92878 1312 aa24.39■■□□□ 1.5
VPS28-206ENST00000526734 FDX1P10109 184 aa24.39■■□□□ 1.49
VPS28-206ENST00000526734 PRKAR2AP13861 404 aaKnown RBP24.39■■□□□ 1.49
VPS28-206ENST00000526734 SLFN13Q68D06 897 aa24.39■■□□□ 1.49
VPS28-206ENST00000526734 NCAPG2Q86XI2 1143 aa24.39■■□□□ 1.49
VPS28-206ENST00000526734 LRRC47Q8N1G4 583 aaKnown RBP24.39■■□□□ 1.49
VPS28-206ENST00000526734 NUP88Q99567 741 aaPredicted RBP24.39■■□□□ 1.49
VPS28-206ENST00000526734 DSCC1Q9BVC3 393 aa24.39■■□□□ 1.49
VPS28-206ENST00000526734 TOMM22Q9NS69 142 aa24.39■■□□□ 1.49
VPS28-206ENST00000526734 STX8Q9UNK0 236 aa24.39■■□□□ 1.49
VPS28-206ENST00000526734 FARP2O94887 1054 aaPredicted RBP24.38■■□□□ 1.49
VPS28-206ENST00000526734 TFRCP02786 760 aaKnown RBP24.38■■□□□ 1.49
VPS28-206ENST00000526734 BMP3P12645 472 aa24.38■■□□□ 1.49
VPS28-206ENST00000526734 ADORA2AP29274 412 aa24.38■■□□□ 1.49
VPS28-206ENST00000526734 STAT3P40763 770 aa24.38■■□□□ 1.49
VPS28-206ENST00000526734 NOVP48745 357 aa24.38■■□□□ 1.49
VPS28-206ENST00000526734 ANKLE1Q8NAG6 615 aa24.38■■□□□ 1.49
VPS28-206ENST00000526734 REPS2Q8NFH8 660 aa24.38■■□□□ 1.49
VPS28-206ENST00000526734 STAG1Q8WVM7 1258 aa24.38■■□□□ 1.49
VPS28-206ENST00000526734 TEX13BQ9BXU2 312 aa24.38■■□□□ 1.49
VPS28-206ENST00000526734 TCP11L1Q9NUJ3 509 aa24.38■■□□□ 1.49
VPS28-206ENST00000526734 ZNF214Q9UL59 606 aaPredicted RBP24.38■■□□□ 1.49
VPS28-206ENST00000526734 MYH4Q9Y623 1939 aa24.37■■□□□ 1.49
VPS28-206ENST00000526734 ATP2A1O14983 1001 aa24.37■■□□□ 1.49
VPS28-206ENST00000526734 FCER1AP12319 257 aa24.37■■□□□ 1.49
VPS28-206ENST00000526734 AKNAD1Q5T1N1 836 aa24.37■■□□□ 1.49
VPS28-206ENST00000526734 MFSD6Q6ZSS7 791 aa24.37■■□□□ 1.49
VPS28-206ENST00000526734 UBE2Q1Q7Z7E8 422 aa24.37■■□□□ 1.49
VPS28-206ENST00000526734 DPP9Q86TI2 863 aa24.37■■□□□ 1.49
VPS28-206ENST00000526734 HTATIP2Q9BUP3 242 aa24.37■■□□□ 1.49
VPS28-206ENST00000526734 CTNNA3Q9UI47 895 aa24.37■■□□□ 1.49
VPS28-206ENST00000526734 CTDP1Q9Y5B0 961 aaPredicted RBP24.37■■□□□ 1.49
VPS28-206ENST00000526734 TNRC18O15417 2968 aaPredicted RBP24.37■■□□□ 1.49
VPS28-206ENST00000526734 ZNF213O14771 459 aa24.36■■□□□ 1.49
VPS28-206ENST00000526734 ZBED4O75132 1171 aa24.36■■□□□ 1.49
VPS28-206ENST00000526734 GSPT1P15170 499 aaKnown RBP24.36■■□□□ 1.49
VPS28-206ENST00000526734 CACNB2Q08289 660 aaPredicted RBP24.36■■□□□ 1.49
VPS28-206ENST00000526734 TRIM32Q13049 653 aa24.36■■□□□ 1.49
VPS28-206ENST00000526734 CCL14Q16627 93 aa24.36■■□□□ 1.49
VPS28-206ENST00000526734 OLFML2BQ68BL8 750 aa24.36■■□□□ 1.49
VPS28-206ENST00000526734 FAM160B2Q86V87 743 aa24.36■■□□□ 1.49
VPS28-206ENST00000526734 RUFY2Q8WXA3 655 aa24.36■■□□□ 1.49
VPS28-206ENST00000526734 IL17RBQ9NRM6 502 aa24.36■■□□□ 1.49
VPS28-206ENST00000526734 PLA2G6O60733 806 aa24.35■■□□□ 1.49
VPS28-206ENST00000526734 SLC1A4P43007 532 aa24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms