RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 ANAPC4Q9UJX5 808 aa11.13□□□□□ -0.63
HDAC3-215ENST00000519474 PLXNB2O15031 1838 aa11.13□□□□□ -0.63
HDAC3-215ENST00000519474 STRNO43815 780 aa11.12□□□□□ -0.63
HDAC3-215ENST00000519474 IGHA2P01877 340 aa11.12□□□□□ -0.63
HDAC3-215ENST00000519474 HMGCRP04035 888 aa11.12□□□□□ -0.63
HDAC3-215ENST00000519474 HSPD1P10809 573 aaKnown RBP11.12□□□□□ -0.63
HDAC3-215ENST00000519474 ERCC3P19447 782 aa11.12□□□□□ -0.63
HDAC3-215ENST00000519474 PDE4BQ07343 736 aa11.12□□□□□ -0.63
HDAC3-215ENST00000519474 CACNB2Q08289 660 aaPredicted RBP11.12□□□□□ -0.63
HDAC3-215ENST00000519474 TMEM132BQ14DG7 1078 aa11.12□□□□□ -0.63
HDAC3-215ENST00000519474 FAM83BQ5T0W9 1011 aa11.12□□□□□ -0.63
HDAC3-215ENST00000519474 MAP3K21Q5TCX8 1036 aa11.12□□□□□ -0.63
HDAC3-215ENST00000519474 ZNF589Q86UQ0 364 aaPredicted RBP11.12□□□□□ -0.63
HDAC3-215ENST00000519474 MB21D1Q8N884 522 aa11.12□□□□□ -0.63
HDAC3-215ENST00000519474 SOCS4Q8WXH5 440 aa11.12□□□□□ -0.63
HDAC3-215ENST00000519474 CEP95Q96GE4 821 aa11.12□□□□□ -0.63
HDAC3-215ENST00000519474 NUP88Q99567 741 aaPredicted RBP11.12□□□□□ -0.63
HDAC3-215ENST00000519474 GOPCQ9HD26 462 aa11.12□□□□□ -0.63
HDAC3-215ENST00000519474 HMX1Q9NP08 348 aaPredicted RBP11.12□□□□□ -0.63
HDAC3-215ENST00000519474 IL17RBQ9NRM6 502 aa11.12□□□□□ -0.63
HDAC3-215ENST00000519474 FLRT1Q9NZU1 646 aa11.12□□□□□ -0.63
HDAC3-215ENST00000519474 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.12□□□□□ -0.63
HDAC3-215ENST00000519474 RLFQ13129 1914 aa11.11□□□□□ -0.63
HDAC3-215ENST00000519474 VWA5AO00534 786 aa11.11□□□□□ -0.63
HDAC3-215ENST00000519474 COBLO75128 1261 aa11.11□□□□□ -0.63
HDAC3-215ENST00000519474 NDUFB10O96000 172 aa11.11□□□□□ -0.63
HDAC3-215ENST00000519474 SLC3A2P08195 630 aaKnown RBP11.11□□□□□ -0.63
HDAC3-215ENST00000519474 HOXC6P09630 235 aa11.11□□□□□ -0.63
HDAC3-215ENST00000519474 CAPN2P17655 700 aa11.11□□□□□ -0.63
HDAC3-215ENST00000519474 RGS2P41220 211 aa11.11□□□□□ -0.63
HDAC3-215ENST00000519474 GRB14Q14449 540 aa11.11□□□□□ -0.63
HDAC3-215ENST00000519474 WDR78Q5VTH9 848 aa11.11□□□□□ -0.63
HDAC3-215ENST00000519474 SAMD1Q6SPF0 538 aaPredicted RBP11.11□□□□□ -0.63
HDAC3-215ENST00000519474 TRMT44Q8IYL2 757 aaKnown RBP11.11□□□□□ -0.63
HDAC3-215ENST00000519474 SHCBP1Q8NEM2 672 aa11.11□□□□□ -0.63
HDAC3-215ENST00000519474 REPS2Q8NFH8 660 aa11.11□□□□□ -0.63
HDAC3-215ENST00000519474 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.11□□□□□ -0.63
HDAC3-215ENST00000519474 PPP1R9AQ9ULJ8 1098 aa11.11□□□□□ -0.63
HDAC3-215ENST00000519474 RAD21O60216 631 aa11.1□□□□□ -0.63
HDAC3-215ENST00000519474 TTLL1O95922 423 aa11.1□□□□□ -0.63
HDAC3-215ENST00000519474 TSPY3P0CV98 308 aa11.1□□□□□ -0.63
HDAC3-215ENST00000519474 TSPY8P0CW00 308 aa11.1□□□□□ -0.63
HDAC3-215ENST00000519474 STAT3P40763 770 aa11.1□□□□□ -0.63
HDAC3-215ENST00000519474 PLS1Q14651 629 aa11.1□□□□□ -0.63
HDAC3-215ENST00000519474 PRPF38BQ5VTL8 546 aaKnown RBP11.1□□□□□ -0.63
HDAC3-215ENST00000519474 PRPF38AQ8NAV1 312 aaKnown RBP11.1□□□□□ -0.63
HDAC3-215ENST00000519474 MROH8Q9H579 483 aa11.1□□□□□ -0.63
HDAC3-215ENST00000519474 CWC22Q9HCG8 908 aaKnown RBP11.1□□□□□ -0.63
HDAC3-215ENST00000519474 RBBP6Q7Z6E9 1792 aaKnown RBP11.1□□□□□ -0.63
HDAC3-215ENST00000519474 NMT2O60551 498 aa11.09□□□□□ -0.63
HDAC3-215ENST00000519474 SLC25A27O95847 323 aa11.09□□□□□ -0.63
HDAC3-215ENST00000519474 PRKAR2AP13861 404 aaKnown RBP11.09□□□□□ -0.63
HDAC3-215ENST00000519474 CCND3P30281 292 aaPredicted RBP11.09□□□□□ -0.63
HDAC3-215ENST00000519474 NOVP48745 357 aa11.09□□□□□ -0.63
HDAC3-215ENST00000519474 MNX1P50219 401 aaPredicted RBP11.09□□□□□ -0.63
HDAC3-215ENST00000519474 SLFN13Q68D06 897 aa11.09□□□□□ -0.63
HDAC3-215ENST00000519474 LHX8Q68G74 356 aa11.09□□□□□ -0.63
HDAC3-215ENST00000519474 CWC27Q6UX04 472 aaKnown RBP11.09□□□□□ -0.63
HDAC3-215ENST00000519474 DPP9Q86TI2 863 aa11.09□□□□□ -0.63
HDAC3-215ENST00000519474 NCAPG2Q86XI2 1143 aa11.09□□□□□ -0.63
HDAC3-215ENST00000519474 RIOX2Q8IUF8 465 aa11.09□□□□□ -0.63
HDAC3-215ENST00000519474 APBA2Q99767 749 aa11.09□□□□□ -0.63
HDAC3-215ENST00000519474 ZNF214Q9UL59 606 aaPredicted RBP11.09□□□□□ -0.63
HDAC3-215ENST00000519474 OGDHLQ9ULD0 1010 aa11.09□□□□□ -0.63
HDAC3-215ENST00000519474 SYNPO2Q9UMS6 1093 aa11.09□□□□□ -0.63
HDAC3-215ENST00000519474 IVNS1ABPQ9Y6Y0 642 aa11.09□□□□□ -0.63
HDAC3-215ENST00000519474 HTTP42858 3142 aa11.09□□□□□ -0.63
HDAC3-215ENST00000519474 MYH8P13535 1937 aa11.08□□□□□ -0.64
HDAC3-215ENST00000519474 GREB1LQ9C091 1923 aaPredicted RBP11.08□□□□□ -0.64
HDAC3-215ENST00000519474 TSPY2A6NKD2 308 aa11.08□□□□□ -0.64
HDAC3-215ENST00000519474 ORC4O43929 436 aa11.08□□□□□ -0.64
HDAC3-215ENST00000519474 RANBP6O60518 1105 aaKnown RBP11.08□□□□□ -0.64
HDAC3-215ENST00000519474 ZKSCAN1P17029 563 aaPredicted RBP11.08□□□□□ -0.64
HDAC3-215ENST00000519474 MCCP23508 829 aa11.08□□□□□ -0.64
HDAC3-215ENST00000519474 ADORA2AP29274 412 aa11.08□□□□□ -0.64
HDAC3-215ENST00000519474 CYP2C19P33261 490 aa11.08□□□□□ -0.64
HDAC3-215ENST00000519474 MFSD14CQ5VZR4 134 aa11.08□□□□□ -0.64
HDAC3-215ENST00000519474 ABRAQ8N0Z2 381 aa11.08□□□□□ -0.64
HDAC3-215ENST00000519474 LRRC47Q8N1G4 583 aaKnown RBP11.08□□□□□ -0.64
HDAC3-215ENST00000519474 GMCL1P1Q8NEA9 526 aa11.08□□□□□ -0.64
HDAC3-215ENST00000519474 PAWRQ96IZ0 340 aaKnown RBP11.08□□□□□ -0.64
HDAC3-215ENST00000519474 SLF1Q9BQI6 1058 aa11.08□□□□□ -0.64
HDAC3-215ENST00000519474 NBPF3Q9H094 633 aa11.08□□□□□ -0.64
HDAC3-215ENST00000519474 TCP11L1Q9NUJ3 509 aa11.08□□□□□ -0.64
HDAC3-215ENST00000519474 FEM1BQ9UK73 627 aa11.08□□□□□ -0.64
HDAC3-215ENST00000519474 RIPK3Q9Y572 518 aa11.08□□□□□ -0.64
HDAC3-215ENST00000519474 CCDC171Q6TFL3 1326 aa11.08□□□□□ -0.64
HDAC3-215ENST00000519474 ATP2A1O14983 1001 aa11.07□□□□□ -0.64
HDAC3-215ENST00000519474 FARP2O94887 1054 aaPredicted RBP11.07□□□□□ -0.64
HDAC3-215ENST00000519474 FCER1AP12319 257 aa11.07□□□□□ -0.64
HDAC3-215ENST00000519474 BMP3P12645 472 aa11.07□□□□□ -0.64
HDAC3-215ENST00000519474 HAND2P61296 217 aa11.07□□□□□ -0.64
HDAC3-215ENST00000519474 PRAMEF19Q5SWL8 479 aa11.07□□□□□ -0.64
HDAC3-215ENST00000519474 RCSD1Q6JBY9 416 aa11.07□□□□□ -0.64
HDAC3-215ENST00000519474 TRPV1Q8NER1 839 aa11.07□□□□□ -0.64
HDAC3-215ENST00000519474 DPF3Q92784 378 aa11.07□□□□□ -0.64
HDAC3-215ENST00000519474 CHMP4CQ96CF2 233 aa11.07□□□□□ -0.64
HDAC3-215ENST00000519474 PLIN4Q96Q06 1357 aa11.06□□□□□ -0.64
HDAC3-215ENST00000519474 TMEM232C9JQI7 657 aa11.06□□□□□ -0.64
HDAC3-215ENST00000519474 H0YGN5 161 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms