RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 PPATQ06203 517 aa22.56■■□□□ 1.2
USP39-218ENST00000493829 FSTL1Q12841 308 aa22.56■■□□□ 1.2
USP39-218ENST00000493829 CUL4AQ13619 759 aa22.56■■□□□ 1.2
USP39-218ENST00000493829 FAM83BQ5T0W9 1011 aa22.56■■□□□ 1.2
USP39-218ENST00000493829 IPO9Q96P70 1041 aaKnown RBP22.56■■□□□ 1.2
USP39-218ENST00000493829 ABT1Q9ULW3 272 aaKnown RBP22.56■■□□□ 1.2
USP39-218ENST00000493829 PTPRFP10586 1907 aa22.56■■□□□ 1.2
USP39-218ENST00000493829 CTDNEP1O95476 244 aa22.55■■□□□ 1.2
USP39-218ENST00000493829 ZNF543Q08ER8 600 aa22.55■■□□□ 1.2
USP39-218ENST00000493829 DCAF4Q8WV16 495 aa22.55■■□□□ 1.2
USP39-218ENST00000493829 PIBF1Q8WXW3 757 aa22.55■■□□□ 1.2
USP39-218ENST00000493829 PHKBQ93100 1093 aa22.55■■□□□ 1.2
USP39-218ENST00000493829 EMILIN3Q9NT22 766 aa22.55■■□□□ 1.2
USP39-218ENST00000493829 RBM28Q9NW13 759 aaKnown RBP22.55■■□□□ 1.2
USP39-218ENST00000493829 SYNPO2Q9UMS6 1093 aa22.55■■□□□ 1.2
USP39-218ENST00000493829 SNHG28P0DPA3 235 aa22.55■■□□□ 1.2
USP39-218ENST00000493829 PPIL2Q13356 520 aa22.55■■□□□ 1.2
USP39-218ENST00000493829 TTBK2Q6IQ55 1244 aa22.55■■□□□ 1.2
USP39-218ENST00000493829 SAMD1Q6SPF0 538 aaPredicted RBP22.55■■□□□ 1.2
USP39-218ENST00000493829 TMTC3Q6ZXV5 915 aa22.55■■□□□ 1.2
USP39-218ENST00000493829 DDX11Q96FC9 970 aa22.55■■□□□ 1.2
USP39-218ENST00000493829 GMCL1Q96IK5 515 aa22.55■■□□□ 1.2
USP39-218ENST00000493829 CCDC196A0A1B0GTZ2 297 aa22.54■■□□□ 1.2
USP39-218ENST00000493829 PTPDC1A2A3K4 754 aa22.54■■□□□ 1.2
USP39-218ENST00000493829 KLRF2D3W0D1 207 aa22.54■■□□□ 1.2
USP39-218ENST00000493829 BMP3P12645 472 aa22.54■■□□□ 1.2
USP39-218ENST00000493829 SLC16A2P36021 539 aa22.54■■□□□ 1.2
USP39-218ENST00000493829 USP14P54578 494 aa22.54■■□□□ 1.2
USP39-218ENST00000493829 IKQ13123 557 aaPredicted RBP22.54■■□□□ 1.2
USP39-218ENST00000493829 ASPRV1Q53RT3 343 aa22.54■■□□□ 1.2
USP39-218ENST00000493829 NBPF11Q86T75 865 aa22.54■■□□□ 1.2
USP39-218ENST00000493829 SAPCD2Q86UD0 394 aa22.54■■□□□ 1.2
USP39-218ENST00000493829 NSUN7Q8NE18 718 aaKnown RBP22.54■■□□□ 1.2
USP39-218ENST00000493829 WNK4Q96J92 1243 aa22.54■■□□□ 1.2
USP39-218ENST00000493829 UBA5Q9GZZ9 404 aa22.54■■□□□ 1.2
USP39-218ENST00000493829 PALM3A6NDB9 673 aaPredicted RBP22.53■■□□□ 1.2
USP39-218ENST00000493829 TMEM88BA6NKF7 163 aa22.53■■□□□ 1.2
USP39-218ENST00000493829 DHX16O60231 1041 aaKnown RBP22.53■■□□□ 1.2
USP39-218ENST00000493829 VCAM1P19320 739 aa22.53■■□□□ 1.2
USP39-218ENST00000493829 SRBD1Q8N5C6 995 aaKnown RBP22.53■■□□□ 1.2
USP39-218ENST00000493829 MAP3K14Q99558 947 aa22.53■■□□□ 1.2
USP39-218ENST00000493829 TMOD4Q9NZQ9 345 aa22.53■■□□□ 1.2
USP39-218ENST00000493829 LOC285556D6RIA3 1793 aa22.53■■□□□ 1.2
USP39-218ENST00000493829 hCG_1642624A0A1W2PR95 340 aa22.52■■□□□ 1.2
USP39-218ENST00000493829 CPLX2Q6PUV4 134 aaKnown RBP22.52■■□□□ 1.2
USP39-218ENST00000493829 GADL1Q6ZQY3 521 aa22.52■■□□□ 1.2
USP39-218ENST00000493829 SLC26A6Q9BXS9 759 aa22.52■■□□□ 1.2
USP39-218ENST00000493829 TANGO6Q9C0B7 1094 aa22.52■■□□□ 1.2
USP39-218ENST00000493829 UNCXA6NJT0 531 aa22.52■■□□□ 1.2
USP39-218ENST00000493829 TMEM232C9JQI7 657 aa22.52■■□□□ 1.2
USP39-218ENST00000493829 ZNF157P51786 506 aaPredicted RBP22.52■■□□□ 1.2
USP39-218ENST00000493829 NTRK3Q16288 839 aa22.52■■□□□ 1.2
USP39-218ENST00000493829 SLC35G1Q2M3R5 365 aa22.52■■□□□ 1.2
USP39-218ENST00000493829 CNTNAP5Q8WYK1 1306 aa22.52■■□□□ 1.2
USP39-218ENST00000493829 LPAR1Q92633 364 aa22.52■■□□□ 1.2
USP39-218ENST00000493829 SMC3Q9UQE7 1217 aa22.52■■□□□ 1.2
USP39-218ENST00000493829 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.52■■□□□ 1.2
USP39-218ENST00000493829 TLL2Q9Y6L7 1015 aa22.52■■□□□ 1.2
USP39-218ENST00000493829 C19orf81C9J6K1 198 aa22.51■■□□□ 1.19
USP39-218ENST00000493829 FOSBP53539 338 aa22.51■■□□□ 1.19
USP39-218ENST00000493829 GPATCH4Q5T3I0 446 aaKnown RBP22.51■■□□□ 1.19
USP39-218ENST00000493829 RPAP3Q9H6T3 665 aaPredicted RBP22.51■■□□□ 1.19
USP39-218ENST00000493829 VAT1LQ9HCJ6 419 aa22.51■■□□□ 1.19
USP39-218ENST00000493829 WDR46O15213 610 aaKnown RBP22.5■■□□□ 1.19
USP39-218ENST00000493829 CDKL5O76039 1030 aa22.5■■□□□ 1.19
USP39-218ENST00000493829 GNAQP50148 359 aa22.5■■□□□ 1.19
USP39-218ENST00000493829 GRM1Q13255 1194 aa22.5■■□□□ 1.19
USP39-218ENST00000493829 PPP2R5BQ15173 497 aa22.5■■□□□ 1.19
USP39-218ENST00000493829 PAXIP1Q6ZW49 1069 aaPredicted RBP22.5■■□□□ 1.19
USP39-218ENST00000493829 RASAL3Q86YV0 1011 aa22.5■■□□□ 1.19
USP39-218ENST00000493829 KCNH4Q9UQ05 1017 aa22.5■■□□□ 1.19
USP39-218ENST00000493829 A0A0G2JLL6 359 aaPredicted RBP22.49■■□□□ 1.19
USP39-218ENST00000493829 IFNAR1P17181 557 aa22.49■■□□□ 1.19
USP39-218ENST00000493829 GJB2P29033 226 aa22.49■■□□□ 1.19
USP39-218ENST00000493829 TREML2Q5T2D2 321 aa22.49■■□□□ 1.19
USP39-218ENST00000493829 RGMBQ6NW40 437 aa22.49■■□□□ 1.19
USP39-218ENST00000493829 PRRT2Q7Z6L0 340 aaPredicted RBP22.49■■□□□ 1.19
USP39-218ENST00000493829 HOMER1Q86YM7 354 aa22.49■■□□□ 1.19
USP39-218ENST00000493829 FBXO28Q9NVF7 368 aa22.49■■□□□ 1.19
USP39-218ENST00000493829 CYTH3O43739 400 aa22.49■■□□□ 1.19
USP39-218ENST00000493829 SSRP1Q08945 709 aaKnown RBP22.49■■□□□ 1.19
USP39-218ENST00000493829 FUT2Q10981 343 aa22.49■■□□□ 1.19
USP39-218ENST00000493829 SNAPC2Q13487 334 aa22.49■■□□□ 1.19
USP39-218ENST00000493829 SH3D19Q5HYK7 790 aa22.49■■□□□ 1.19
USP39-218ENST00000493829 SPRYD7Q5W111 196 aa22.49■■□□□ 1.19
USP39-218ENST00000493829 INTS4Q96HW7 963 aaKnown RBP22.49■■□□□ 1.19
USP39-218ENST00000493829 C12orf42Q96LP6 360 aa22.49■■□□□ 1.19
USP39-218ENST00000493829 LLPHQ9BRT6 129 aaKnown RBP22.49■■□□□ 1.19
USP39-218ENST00000493829 CXCL11O14625 94 aa22.48■■□□□ 1.19
USP39-218ENST00000493829 STAT2P52630 851 aa22.48■■□□□ 1.19
USP39-218ENST00000493829 SNAP25P60880 206 aa22.48■■□□□ 1.19
USP39-218ENST00000493829 TRIM22Q8IYM9 498 aa22.48■■□□□ 1.19
USP39-218ENST00000493829 SMARCC2Q8TAQ2 1214 aa22.48■■□□□ 1.19
USP39-218ENST00000493829 KIFC2Q96AC6 838 aa22.48■■□□□ 1.19
USP39-218ENST00000493829 ORC3Q9UBD5 711 aaPredicted RBP22.48■■□□□ 1.19
USP39-218ENST00000493829 MYH6P13533 1939 aa22.47■■□□□ 1.19
USP39-218ENST00000493829 FMNL1O95466 1100 aaPredicted RBP22.47■■□□□ 1.19
USP39-218ENST00000493829 ADGRF4Q8IZF3 695 aa22.47■■□□□ 1.19
USP39-218ENST00000493829 LZTS2Q9BRK4 669 aa22.47■■□□□ 1.19
USP39-218ENST00000493829 V9GY48 417 aaPredicted RBP22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 1052 ms