RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 NEDD1Q8NHV4 660 aa17.91■□□□□ 0.46
USP39-217ENST00000491659 U2AF1L4Q8WU68 220 aaKnown RBP17.91■□□□□ 0.46
USP39-217ENST00000491659 USP6NLQ92738 828 aa17.91■□□□□ 0.46
USP39-217ENST00000491659 MOV10L1Q9BXT6 1211 aaKnown RBP17.91■□□□□ 0.46
USP39-217ENST00000491659 MTMR4Q9NYA4 1195 aa17.91■□□□□ 0.46
USP39-217ENST00000491659 CLIP2Q9UDT6 1046 aa17.91■□□□□ 0.46
USP39-217ENST00000491659 ANAPC4Q9UJX5 808 aa17.91■□□□□ 0.46
USP39-217ENST00000491659 SYNPO2Q9UMS6 1093 aa17.91■□□□□ 0.46
USP39-217ENST00000491659 TSPY2A6NKD2 308 aa17.9■□□□□ 0.46
USP39-217ENST00000491659 F5H6K3 240 aa17.9■□□□□ 0.46
USP39-217ENST00000491659 HSPD1P10809 573 aaKnown RBP17.9■□□□□ 0.46
USP39-217ENST00000491659 CAPN2P17655 700 aa17.9■□□□□ 0.46
USP39-217ENST00000491659 PTPREP23469 700 aa17.9■□□□□ 0.46
USP39-217ENST00000491659 TFAP4Q01664 338 aa17.9■□□□□ 0.46
USP39-217ENST00000491659 KLRC3Q07444 240 aa17.9■□□□□ 0.46
USP39-217ENST00000491659 SHCBP1Q8NEM2 672 aa17.9■□□□□ 0.46
USP39-217ENST00000491659 DEFB118Q96PH6 123 aa17.9■□□□□ 0.46
USP39-217ENST00000491659 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.9■□□□□ 0.46
USP39-217ENST00000491659 HMX1Q9NP08 348 aaPredicted RBP17.9■□□□□ 0.46
USP39-217ENST00000491659 PAK6Q9NQU5 681 aaPredicted RBP17.9■□□□□ 0.46
USP39-217ENST00000491659 PPP1R9AQ9ULJ8 1098 aa17.9■□□□□ 0.46
USP39-217ENST00000491659 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.9■□□□□ 0.46
USP39-217ENST00000491659 RPTORQ8N122 1335 aa17.9■□□□□ 0.46
USP39-217ENST00000491659 SGPL1O95470 568 aa17.89■□□□□ 0.45
USP39-217ENST00000491659 NDUFB10O96000 172 aa17.89■□□□□ 0.45
USP39-217ENST00000491659 GRB14Q14449 540 aa17.89■□□□□ 0.45
USP39-217ENST00000491659 PRPF38BQ5VTL8 546 aaKnown RBP17.89■□□□□ 0.45
USP39-217ENST00000491659 CWC27Q6UX04 472 aaKnown RBP17.89■□□□□ 0.45
USP39-217ENST00000491659 LRRC47Q8N1G4 583 aaKnown RBP17.89■□□□□ 0.45
USP39-217ENST00000491659 MKL1Q969V6 931 aa17.89■□□□□ 0.45
USP39-217ENST00000491659 NUP88Q99567 741 aaPredicted RBP17.89■□□□□ 0.45
USP39-217ENST00000491659 SLF1Q9BQI6 1058 aa17.89■□□□□ 0.45
USP39-217ENST00000491659 MROH8Q9H579 483 aa17.89■□□□□ 0.45
USP39-217ENST00000491659 TOMM22Q9NS69 142 aa17.89■□□□□ 0.45
USP39-217ENST00000491659 FBXO28Q9NVF7 368 aa17.89■□□□□ 0.45
USP39-217ENST00000491659 BRCA2P51587 3418 aa17.88■□□□□ 0.45
USP39-217ENST00000491659 RANBP6O60518 1105 aaKnown RBP17.88■□□□□ 0.45
USP39-217ENST00000491659 FGAP02671 866 aa17.88■□□□□ 0.45
USP39-217ENST00000491659 PRKAR2AP13861 404 aaKnown RBP17.88■□□□□ 0.45
USP39-217ENST00000491659 ERCC3P19447 782 aa17.88■□□□□ 0.45
USP39-217ENST00000491659 PDE4AP27815 886 aa17.88■□□□□ 0.45
USP39-217ENST00000491659 TRIM32Q13049 653 aa17.88■□□□□ 0.45
USP39-217ENST00000491659 NCAPG2Q86XI2 1143 aa17.88■□□□□ 0.45
USP39-217ENST00000491659 GMCL1P1Q8NEA9 526 aa17.88■□□□□ 0.45
USP39-217ENST00000491659 FRMPD3Q5JV73 1810 aa17.88■□□□□ 0.45
USP39-217ENST00000491659 STRNO43815 780 aa17.87■□□□□ 0.45
USP39-217ENST00000491659 ORC4O43929 436 aa17.87■□□□□ 0.45
USP39-217ENST00000491659 FARP2O94887 1054 aaPredicted RBP17.87■□□□□ 0.45
USP39-217ENST00000491659 SLC25A27O95847 323 aa17.87■□□□□ 0.45
USP39-217ENST00000491659 TFRCP02786 760 aaKnown RBP17.87■□□□□ 0.45
USP39-217ENST00000491659 TMEM132BQ14DG7 1078 aa17.87■□□□□ 0.45
USP39-217ENST00000491659 CCL14Q16627 93 aa17.87■□□□□ 0.45
USP39-217ENST00000491659 TTC22Q5TAA0 569 aa17.87■□□□□ 0.45
USP39-217ENST00000491659 ADAMTS5Q9UNA0 930 aa17.87■□□□□ 0.45
USP39-217ENST00000491659 STX8Q9UNK0 236 aa17.87■□□□□ 0.45
USP39-217ENST00000491659 ZNFX1Q9P2E3 1918 aaKnown RBP17.86■□□□□ 0.45
USP39-217ENST00000491659 VWA5AO00534 786 aa17.86■□□□□ 0.45
USP39-217ENST00000491659 HOXC6P09630 235 aa17.86■□□□□ 0.45
USP39-217ENST00000491659 ADORA2AP29274 412 aa17.86■□□□□ 0.45
USP39-217ENST00000491659 COPB2P35606 906 aa17.86■□□□□ 0.45
USP39-217ENST00000491659 RRP12Q5JTH9 1297 aaKnown RBP17.86■□□□□ 0.45
USP39-217ENST00000491659 MAP3K21Q5TCX8 1036 aa17.86■□□□□ 0.45
USP39-217ENST00000491659 MFSD14CQ5VZR4 134 aa17.86■□□□□ 0.45
USP39-217ENST00000491659 DPP9Q86TI2 863 aa17.86■□□□□ 0.45
USP39-217ENST00000491659 ISY1Q9ULR0 285 aaKnown RBP17.86■□□□□ 0.45
USP39-217ENST00000491659 CTDP1Q9Y5B0 961 aaPredicted RBP17.86■□□□□ 0.45
USP39-217ENST00000491659 PLXNA1Q9UIW2 1896 aa17.86■□□□□ 0.45
USP39-217ENST00000491659 FGRP09769 529 aa17.85■□□□□ 0.45
USP39-217ENST00000491659 BMP3P12645 472 aa17.85■□□□□ 0.45
USP39-217ENST00000491659 HAND2P61296 217 aa17.85■□□□□ 0.45
USP39-217ENST00000491659 SLFN13Q68D06 897 aa17.85■□□□□ 0.45
USP39-217ENST00000491659 RIOX2Q8IUF8 465 aa17.85■□□□□ 0.45
USP39-217ENST00000491659 ABRAQ8N0Z2 381 aa17.85■□□□□ 0.45
USP39-217ENST00000491659 PRPF38AQ8NAV1 312 aaKnown RBP17.85■□□□□ 0.45
USP39-217ENST00000491659 INCENPQ9NQS7 918 aa17.85■□□□□ 0.45
USP39-217ENST00000491659 SLC5A4Q9NY91 659 aa17.85■□□□□ 0.45
USP39-217ENST00000491659 PCP11498 1178 aaKnown RBP17.84■□□□□ 0.45
USP39-217ENST00000491659 FCER1AP12319 257 aa17.84■□□□□ 0.45
USP39-217ENST00000491659 GSPT1P15170 499 aaKnown RBP17.84■□□□□ 0.45
USP39-217ENST00000491659 STAT3P40763 770 aa17.84■□□□□ 0.45
USP39-217ENST00000491659 CACNB2Q08289 660 aaPredicted RBP17.84■□□□□ 0.45
USP39-217ENST00000491659 MFSD6Q6ZSS7 791 aa17.84■□□□□ 0.45
USP39-217ENST00000491659 REPS2Q8NFH8 660 aa17.84■□□□□ 0.45
USP39-217ENST00000491659 CRISPLD2Q9H0B8 497 aa17.84■□□□□ 0.45
USP39-217ENST00000491659 RNF41Q9H4P4 317 aaPredicted RBP17.84■□□□□ 0.45
USP39-217ENST00000491659 FEM1BQ9UK73 627 aa17.84■□□□□ 0.45
USP39-217ENST00000491659 ZNF214Q9UL59 606 aaPredicted RBP17.84■□□□□ 0.45
USP39-217ENST00000491659 TACC3Q9Y6A5 838 aa17.84■□□□□ 0.45
USP39-217ENST00000491659 NMT2O60551 498 aa17.83■□□□□ 0.44
USP39-217ENST00000491659 ZBED4O75132 1171 aa17.83■□□□□ 0.44
USP39-217ENST00000491659 AKNAD1Q5T1N1 836 aa17.83■□□□□ 0.44
USP39-217ENST00000491659 NPLOC4Q8TAT6 608 aa17.83■□□□□ 0.44
USP39-217ENST00000491659 STAG1Q8WVM7 1258 aa17.83■□□□□ 0.44
USP39-217ENST00000491659 KIFC2Q96AC6 838 aa17.83■□□□□ 0.44
USP39-217ENST00000491659 HTATIP2Q9BUP3 242 aa17.83■□□□□ 0.44
USP39-217ENST00000491659 TEX13BQ9BXU2 312 aa17.83■□□□□ 0.44
USP39-217ENST00000491659 IL17RBQ9NRM6 502 aa17.83■□□□□ 0.44
USP39-217ENST00000491659 FLRT1Q9NZU1 646 aa17.83■□□□□ 0.44
USP39-217ENST00000491659 RAD50Q92878 1312 aa17.82■□□□□ 0.44
USP39-217ENST00000491659 ZNF213O14771 459 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms