RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 DEFB118Q96PH6 123 aa29.72■■■□□ 2.35
HMGN1-217ENST00000489072 NUP88Q99567 741 aaPredicted RBP29.72■■■□□ 2.35
HMGN1-217ENST00000489072 APBA2Q99767 749 aa29.72■■■□□ 2.35
HMGN1-217ENST00000489072 XRN2Q9H0D6 950 aaKnown RBP eCLIP29.72■■■□□ 2.354e-10■■■■□ 24
HMGN1-217ENST00000489072 SLC15A5A6NIM6 579 aa29.71■■■□□ 2.35
HMGN1-217ENST00000489072 F5H6K3 240 aa29.71■■■□□ 2.35
HMGN1-217ENST00000489072 TSPY3P0CV98 308 aa29.71■■■□□ 2.35
HMGN1-217ENST00000489072 TSPY8P0CW00 308 aa29.71■■■□□ 2.35
HMGN1-217ENST00000489072 PDE4AP27815 886 aa29.71■■■□□ 2.35
HMGN1-217ENST00000489072 TFAP4Q01664 338 aa29.71■■■□□ 2.35
HMGN1-217ENST00000489072 KLRC3Q07444 240 aa29.71■■■□□ 2.35
HMGN1-217ENST00000489072 PRPF38BQ5VTL8 546 aaKnown RBP29.71■■■□□ 2.35
HMGN1-217ENST00000489072 ANAPC4Q9UJX5 808 aa29.71■■■□□ 2.35
HMGN1-217ENST00000489072 ADAMTS5Q9UNA0 930 aa29.71■■■□□ 2.35
HMGN1-217ENST00000489072 CEP290O15078 2479 aa29.71■■■□□ 2.35
HMGN1-217ENST00000489072 NDUFB10O96000 172 aa29.7■■■□□ 2.35
HMGN1-217ENST00000489072 HSPD1P10809 573 aaKnown RBP29.7■■■□□ 2.35
HMGN1-217ENST00000489072 ZKSCAN1P17029 563 aaPredicted RBP29.7■■■□□ 2.35
HMGN1-217ENST00000489072 GRB14Q14449 540 aa29.7■■■□□ 2.35
HMGN1-217ENST00000489072 MAP3K21Q5TCX8 1036 aa29.7■■■□□ 2.35
HMGN1-217ENST00000489072 UBE2Q1Q7Z7E8 422 aa29.7■■■□□ 2.35
HMGN1-217ENST00000489072 MKL1Q969V6 931 aa29.7■■■□□ 2.35
HMGN1-217ENST00000489072 PPP1R9AQ9ULJ8 1098 aa29.7■■■□□ 2.35
HMGN1-217ENST00000489072 CCDC171Q6TFL3 1326 aa29.7■■■□□ 2.34
HMGN1-217ENST00000489072 RPTORQ8N122 1335 aa29.7■■■□□ 2.34
HMGN1-217ENST00000489072 ZNF236Q9UL36 1845 aa29.69■■■□□ 2.34
HMGN1-217ENST00000489072 FGAP02671 866 aa29.69■■■□□ 2.34
HMGN1-217ENST00000489072 ERCC3P19447 782 aa29.69■■■□□ 2.34
HMGN1-217ENST00000489072 PLS1Q14651 629 aa29.69■■■□□ 2.34
HMGN1-217ENST00000489072 TMEM132BQ14DG7 1078 aa29.69■■■□□ 2.34
HMGN1-217ENST00000489072 TRMT44Q8IYL2 757 aaKnown RBP29.69■■■□□ 2.34
HMGN1-217ENST00000489072 SHCBP1Q8NEM2 672 aa29.69■■■□□ 2.34
HMGN1-217ENST00000489072 IVNS1ABPQ9Y6Y0 642 aa29.69■■■□□ 2.34
HMGN1-217ENST00000489072 TTLL1O95922 423 aa29.68■■■□□ 2.34
HMGN1-217ENST00000489072 PRKAR2AP13861 404 aaKnown RBP29.68■■■□□ 2.34
HMGN1-217ENST00000489072 LRRC47Q8N1G4 583 aaKnown RBP29.68■■■□□ 2.34
HMGN1-217ENST00000489072 CRISPLD2Q9H0B8 497 aa29.68■■■□□ 2.34
HMGN1-217ENST00000489072 HMX1Q9NP08 348 aaPredicted RBP29.68■■■□□ 2.34
HMGN1-217ENST00000489072 FLRT1Q9NZU1 646 aa29.67■■■□□ 2.34
HMGN1-217ENST00000489072 ZMYM6O95789 1325 aa29.67■■■□□ 2.34
HMGN1-217ENST00000489072 ZNFX1Q9P2E3 1918 aaKnown RBP29.67■■■□□ 2.34
HMGN1-217ENST00000489072 VWA5AO00534 786 aa29.66■■■□□ 2.34
HMGN1-217ENST00000489072 TFRCP02786 760 aaKnown RBP29.66■■■□□ 2.34
HMGN1-217ENST00000489072 HOXC6P09630 235 aa29.66■■■□□ 2.34
HMGN1-217ENST00000489072 CACNB2Q08289 660 aaPredicted RBP29.66■■■□□ 2.34
HMGN1-217ENST00000489072 REPS2Q8NFH8 660 aa29.66■■■□□ 2.34
HMGN1-217ENST00000489072 NPLOC4Q8TAT6 608 aa29.66■■■□□ 2.34
HMGN1-217ENST00000489072 SYNPO2Q9UMS6 1093 aa29.66■■■□□ 2.34
HMGN1-217ENST00000489072 FGRP09769 529 aa29.65■■■□□ 2.34
HMGN1-217ENST00000489072 SLF1Q9BQI6 1058 aa29.65■■■□□ 2.34
HMGN1-217ENST00000489072 ORC4O43929 436 aa29.64■■■□□ 2.34
HMGN1-217ENST00000489072 FARP2O94887 1054 aaPredicted RBP29.64■■■□□ 2.34
HMGN1-217ENST00000489072 ADORA2AP29274 412 aa29.64■■■□□ 2.34
HMGN1-217ENST00000489072 NCAPG2Q86XI2 1143 aa29.64■■■□□ 2.34
HMGN1-217ENST00000489072 GMCL1P1Q8NEA9 526 aa29.64■■■□□ 2.34
HMGN1-217ENST00000489072 MROH8Q9H579 483 aa29.64■■■□□ 2.34
HMGN1-217ENST00000489072 IL17RBQ9NRM6 502 aa29.64■■■□□ 2.34
HMGN1-217ENST00000489072 TSPY2A6NKD2 308 aa29.63■■■□□ 2.33
HMGN1-217ENST00000489072 STRNO43815 780 aa29.63■■■□□ 2.33
HMGN1-217ENST00000489072 NMT2O60551 498 aa29.63■■■□□ 2.33
HMGN1-217ENST00000489072 CWC27Q6UX04 472 aaKnown RBP29.63■■■□□ 2.33
HMGN1-217ENST00000489072 DIAPH3Q9NSV4 1193 aa29.63■■■□□ 2.33
HMGN1-217ENST00000489072 ZNF214Q9UL59 606 aaPredicted RBP29.63■■■□□ 2.33
HMGN1-217ENST00000489072 RANBP6O60518 1105 aaKnown RBP29.62■■■□□ 2.33
HMGN1-217ENST00000489072 HAND2P61296 217 aa29.62■■■□□ 2.33
HMGN1-217ENST00000489072 RIOX2Q8IUF8 465 aa29.62■■■□□ 2.33
HMGN1-217ENST00000489072 NBPF3Q9H094 633 aa29.62■■■□□ 2.33
HMGN1-217ENST00000489072 COBLO75128 1261 aa29.61■■■□□ 2.33
HMGN1-217ENST00000489072 IGHA2P01877 340 aa29.61■■■□□ 2.33
HMGN1-217ENST00000489072 GSPT1P15170 499 aaKnown RBP29.61■■■□□ 2.33
HMGN1-217ENST00000489072 CAPN2P17655 700 aa29.61■■■□□ 2.33
HMGN1-217ENST00000489072 CCND3P30281 292 aaPredicted RBP29.61■■■□□ 2.33
HMGN1-217ENST00000489072 MFAP1P55081 439 aaKnown RBP29.61■■■□□ 2.33
HMGN1-217ENST00000489072 SLFN13Q68D06 897 aa29.61■■■□□ 2.33
HMGN1-217ENST00000489072 LAMA4Q16363 1823 aa29.6■■■□□ 2.33
HMGN1-217ENST00000489072 SLC25A27O95847 323 aa29.6■■■□□ 2.33
HMGN1-217ENST00000489072 STAT3P40763 770 aa29.6■■■□□ 2.33
HMGN1-217ENST00000489072 TTC22Q5TAA0 569 aa29.6■■■□□ 2.33
HMGN1-217ENST00000489072 DPP9Q86TI2 863 aa29.6■■■□□ 2.33
HMGN1-217ENST00000489072 PRPF38AQ8NAV1 312 aaKnown RBP29.6■■■□□ 2.33
HMGN1-217ENST00000489072 HIP1O00291 1037 aa29.59■■■□□ 2.33
HMGN1-217ENST00000489072 MFSD14CQ5VZR4 134 aa29.59■■■□□ 2.33
HMGN1-217ENST00000489072 ABRAQ8N0Z2 381 aa29.59■■■□□ 2.33
HMGN1-217ENST00000489072 TOMM22Q9NS69 142 aa29.59■■■□□ 2.33
HMGN1-217ENST00000489072 STX8Q9UNK0 236 aa29.59■■■□□ 2.33
HMGN1-217ENST00000489072 CYP2C19P33261 490 aa29.58■■■□□ 2.33
HMGN1-217ENST00000489072 NOVP48745 357 aa29.58■■■□□ 2.33
HMGN1-217ENST00000489072 RRP12Q5JTH9 1297 aaKnown RBP29.58■■■□□ 2.33
HMGN1-217ENST00000489072 FRMPD3Q5JV73 1810 aa29.58■■■□□ 2.33
HMGN1-217ENST00000489072 TBC1D10CQ8IV04 446 aa29.58■■■□□ 2.33
HMGN1-217ENST00000489072 DIS3LQ8TF46 1054 aaKnown RBP29.58■■■□□ 2.33
HMGN1-217ENST00000489072 FEM1BQ9UK73 627 aa29.58■■■□□ 2.33
HMGN1-217ENST00000489072 FCER1AP12319 257 aa29.57■■■□□ 2.32
HMGN1-217ENST00000489072 BMP3P12645 472 aa29.57■■■□□ 2.32
HMGN1-217ENST00000489072 PPP4R3BQ5MIZ7 849 aa29.57■■■□□ 2.32
HMGN1-217ENST00000489072 KIFC2Q96AC6 838 aa29.57■■■□□ 2.32
HMGN1-217ENST00000489072 CHMP4CQ96CF2 233 aa29.57■■■□□ 2.32
HMGN1-217ENST00000489072 GMCL1Q96IK5 515 aa29.57■■■□□ 2.32
HMGN1-217ENST00000489072 IL25Q9H293 177 aa29.57■■■□□ 2.32
HMGN1-217ENST00000489072 OGDHLQ9ULD0 1010 aa29.57■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms