RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 RASA3Q14644 834 aa8.81□□□□□ -1
USP4-211ENST00000485450 SUPT20HL1Q3ZLR7 823 aa8.81□□□□□ -1
USP4-211ENST00000485450 TTC19Q6DKK2 380 aaPredicted RBP8.81□□□□□ -1
USP4-211ENST00000485450 MAGEB6Q8N7X4 407 aa8.81□□□□□ -1
USP4-211ENST00000485450 GOLGA6L1Q8N7Z2 621 aa8.81□□□□□ -1
USP4-211ENST00000485450 TDRD3Q9H7E2 651 aaKnown RBP8.81□□□□□ -1
USP4-211ENST00000485450 SGSM2O43147 1006 aa8.81□□□□□ -1
USP4-211ENST00000485450 PLA2G6O60733 806 aa8.81□□□□□ -1
USP4-211ENST00000485450 PPIL2Q13356 520 aa8.81□□□□□ -1
USP4-211ENST00000485450 TPD52L1Q16890 204 aaPredicted RBP8.81□□□□□ -1
USP4-211ENST00000485450 CCDC91Q7Z6B0 441 aa8.81□□□□□ -1
USP4-211ENST00000485450 AFG3L2Q9Y4W6 797 aa8.81□□□□□ -1
USP4-211ENST00000485450 MAGEB6P1A0A0J9YX57 407 aa8.8□□□□□ -1
USP4-211ENST00000485450 PPATQ06203 517 aa8.8□□□□□ -1
USP4-211ENST00000485450 RRP1BQ14684 758 aaKnown RBP8.8□□□□□ -1
USP4-211ENST00000485450 ZSCAN26Q16670 478 aa8.8□□□□□ -1
USP4-211ENST00000485450 SLC9C2Q5TAH2 1124 aa8.8□□□□□ -1
USP4-211ENST00000485450 DZIP1Q86YF9 867 aaKnown RBP8.8□□□□□ -1
USP4-211ENST00000485450 GTF3C6Q969F1 213 aa8.8□□□□□ -1
USP4-211ENST00000485450 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.8□□□□□ -1
USP4-211ENST00000485450 GLIS2Q9BZE0 524 aaPredicted RBP8.8□□□□□ -1
USP4-211ENST00000485450 IL25Q9H293 177 aa8.8□□□□□ -1
USP4-211ENST00000485450 USP40Q9NVE5 1235 aa8.8□□□□□ -1
USP4-211ENST00000485450 CCDC171Q6TFL3 1326 aa8.8□□□□□ -1
USP4-211ENST00000485450 A0A0G2JLL6 359 aaPredicted RBP8.8□□□□□ -1
USP4-211ENST00000485450 PNMA6AP0CW24 399 aaPredicted RBP8.8□□□□□ -1
USP4-211ENST00000485450 GJA5P36382 358 aa8.8□□□□□ -1
USP4-211ENST00000485450 LRMPQ12912 555 aa8.8□□□□□ -1
USP4-211ENST00000485450 MCMDC2Q4G0Z9 681 aa8.8□□□□□ -1
USP4-211ENST00000485450 MCTP2Q6DN12 878 aa8.8□□□□□ -1
USP4-211ENST00000485450 CCDC186Q7Z3E2 898 aa8.8□□□□□ -1
USP4-211ENST00000485450 KRT26Q7Z3Y9 468 aa8.8□□□□□ -1
USP4-211ENST00000485450 PRRT2Q7Z6L0 340 aaPredicted RBP8.8□□□□□ -1
USP4-211ENST00000485450 STAG1Q8WVM7 1258 aa8.8□□□□□ -1
USP4-211ENST00000485450 MAP4K1Q92918 833 aa8.8□□□□□ -1
USP4-211ENST00000485450 ZNF341Q9BYN7 854 aa8.8□□□□□ -1
USP4-211ENST00000485450 ALDH8A1Q9H2A2 487 aaPredicted RBP8.8□□□□□ -1
USP4-211ENST00000485450 BOLA2Q9H3K6 86 aa8.8□□□□□ -1
USP4-211ENST00000485450 GDPD2Q9HCC8 539 aa8.8□□□□□ -1
USP4-211ENST00000485450 PI4KBQ9UBF8 816 aa8.8□□□□□ -1
USP4-211ENST00000485450 A0A0D9SFI3 127 aa8.8□□□□□ -1
USP4-211ENST00000485450 SLU7O95391 586 aaKnown RBP8.8□□□□□ -1
USP4-211ENST00000485450 UBE2HP62256 183 aa8.8□□□□□ -1
USP4-211ENST00000485450 NYAP1Q6ZVC0 841 aa8.8□□□□□ -1
USP4-211ENST00000485450 RPAINQ86UA6 219 aa8.8□□□□□ -1
USP4-211ENST00000485450 IQUBQ8NA54 791 aa8.8□□□□□ -1
USP4-211ENST00000485450 EDC3Q96F86 508 aaKnown RBP8.8□□□□□ -1
USP4-211ENST00000485450 LSG1Q9H089 658 aaKnown RBP8.8□□□□□ -1
USP4-211ENST00000485450 ADAMTS5Q9UNA0 930 aa8.8□□□□□ -1
USP4-211ENST00000485450 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.79□□□□□ -1
USP4-211ENST00000485450 IFNLR1Q8IU57 520 aaPredicted RBP8.79□□□□□ -1
USP4-211ENST00000485450 GBA2Q9HCG7 927 aaPredicted RBP8.79□□□□□ -1
USP4-211ENST00000485450 RBM28Q9NW13 759 aaKnown RBP8.79□□□□□ -1
USP4-211ENST00000485450 V9GYY5 206 aaPredicted RBP8.79□□□□□ -1
USP4-211ENST00000485450 CPP00450 1065 aa8.79□□□□□ -1
USP4-211ENST00000485450 CYP7A1P22680 504 aa8.79□□□□□ -1
USP4-211ENST00000485450 GPS2Q13227 327 aa8.79□□□□□ -1
USP4-211ENST00000485450 TTC31Q49AM3 519 aaPredicted RBP8.79□□□□□ -1
USP4-211ENST00000485450 SIAH1Q8IUQ4 282 aa8.79□□□□□ -1
USP4-211ENST00000485450 FBXO18Q8NFZ0 1043 aa8.79□□□□□ -1
USP4-211ENST00000485450 GOLGA5Q8TBA6 731 aa8.79□□□□□ -1
USP4-211ENST00000485450 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.79□□□□□ -1
USP4-211ENST00000485450 MTMR7Q9Y216 660 aa8.79□□□□□ -1
USP4-211ENST00000485450 WDR33Q9C0J8 1336 aaKnown RBP8.79□□□□□ -1
USP4-211ENST00000485450 ZRANB2O95218 330 aaKnown RBP eCLIP8.79□□□□□ -1
USP4-211ENST00000485450 MAGEA9P43362 315 aa8.79□□□□□ -1
USP4-211ENST00000485450 DYNLL1P63167 89 aaKnown RBP8.79□□□□□ -1
USP4-211ENST00000485450 NBPF12Q5TAG4 269 aaPredicted RBP8.79□□□□□ -1
USP4-211ENST00000485450 CDAN1Q8IWY9 1227 aa8.79□□□□□ -1
USP4-211ENST00000485450 SCYL3Q8IZE3 742 aa8.79□□□□□ -1
USP4-211ENST00000485450 CEP89Q96ST8 783 aa8.79□□□□□ -1
USP4-211ENST00000485450 AGXT2Q9BYV1 514 aa8.79□□□□□ -1
USP4-211ENST00000485450 CRNKL1Q9BZJ0 848 aaKnown RBP8.79□□□□□ -1
USP4-211ENST00000485450 TMEM39BQ9GZU3 492 aa8.79□□□□□ -1
USP4-211ENST00000485450 TRAF5O00463 557 aa8.78□□□□□ -1
USP4-211ENST00000485450 GPAA1O43292 621 aa8.78□□□□□ -1
USP4-211ENST00000485450 CAP2P40123 477 aa8.78□□□□□ -1
USP4-211ENST00000485450 DCAF15Q66K64 600 aa8.78□□□□□ -1
USP4-211ENST00000485450 GPAT2Q6NUI2 795 aa8.78□□□□□ -1
USP4-211ENST00000485450 SULF1Q8IWU6 871 aa8.78□□□□□ -1
USP4-211ENST00000485450 ANKRD13AQ8IZ07 590 aa8.78□□□□□ -1
USP4-211ENST00000485450 WNK4Q96J92 1243 aa8.78□□□□□ -1
USP4-211ENST00000485450 LRP2BPQ9P2M1 347 aa8.78□□□□□ -1
USP4-211ENST00000485450 MYPNQ86TC9 1320 aa8.78□□□□□ -1
USP4-211ENST00000485450 G3V3G9 751 aa8.78□□□□□ -1
USP4-211ENST00000485450 CXCL11O14625 94 aa8.78□□□□□ -1
USP4-211ENST00000485450 SNHG28P0DPA3 235 aa8.78□□□□□ -1
USP4-211ENST00000485450 HOXA7P31268 230 aaPredicted RBP8.78□□□□□ -1
USP4-211ENST00000485450 CLCN6P51797 869 aa8.78□□□□□ -1
USP4-211ENST00000485450 TBC1D8BQ0IIM8 1120 aa8.78□□□□□ -1
USP4-211ENST00000485450 DCAF8Q5TAQ9 597 aa8.78□□□□□ -1
USP4-211ENST00000485450 SPRYD7Q5W111 196 aa8.78□□□□□ -1
USP4-211ENST00000485450 MAP1SQ66K74 1059 aaPredicted RBP8.78□□□□□ -1
USP4-211ENST00000485450 NAIF1Q69YI7 327 aaPredicted RBP8.78□□□□□ -1
USP4-211ENST00000485450 ZNF589Q86UQ0 364 aaPredicted RBP8.78□□□□□ -1
USP4-211ENST00000485450 PRPF38AQ8NAV1 312 aaKnown RBP8.78□□□□□ -1
USP4-211ENST00000485450 CCDC102AQ96A19 550 aa8.78□□□□□ -1
USP4-211ENST00000485450 ZSCAN16Q9H4T2 348 aaPredicted RBP8.78□□□□□ -1
USP4-211ENST00000485450 IQSEC3Q9UPP2 1182 aaPredicted RBP8.78□□□□□ -1
USP4-211ENST00000485450 HSPD1P10809 573 aaKnown RBP8.77□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms