RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 ALX1Q15699 326 aa23.1■■□□□ 1.29
USP40-207ENST00000450940 WDR78Q5VTH9 848 aa23.1■■□□□ 1.29
USP40-207ENST00000450940 B4GALNT3Q6L9W6 998 aa23.1■■□□□ 1.29
USP40-207ENST00000450940 PLEKHM2Q8IWE5 1019 aa23.1■■□□□ 1.29
USP40-207ENST00000450940 PIAS4Q8N2W9 510 aaPredicted RBP23.1■■□□□ 1.29
USP40-207ENST00000450940 ANKLE1Q8NAG6 615 aa23.1■■□□□ 1.29
USP40-207ENST00000450940 NEDD1Q8NHV4 660 aa23.1■■□□□ 1.29
USP40-207ENST00000450940 MROH8Q9H579 483 aa23.1■■□□□ 1.29
USP40-207ENST00000450940 MTMR4Q9NYA4 1195 aa23.1■■□□□ 1.29
USP40-207ENST00000450940 CEP290O15078 2479 aa23.09■■□□□ 1.29
USP40-207ENST00000450940 F5H6K3 240 aa23.09■■□□□ 1.29
USP40-207ENST00000450940 SLC3A2P08195 630 aaKnown RBP23.09■■□□□ 1.29
USP40-207ENST00000450940 ERCC3P19447 782 aa23.09■■□□□ 1.29
USP40-207ENST00000450940 KLRC3Q07444 240 aa23.09■■□□□ 1.29
USP40-207ENST00000450940 FBXO28Q9NVF7 368 aa23.09■■□□□ 1.29
USP40-207ENST00000450940 CLIP2Q9UDT6 1046 aa23.09■■□□□ 1.29
USP40-207ENST00000450940 ANAPC4Q9UJX5 808 aa23.09■■□□□ 1.29
USP40-207ENST00000450940 PPP1R9AQ9ULJ8 1098 aa23.09■■□□□ 1.29
USP40-207ENST00000450940 TMEM132BQ14DG7 1078 aa23.08■■□□□ 1.29
USP40-207ENST00000450940 MCMDC2Q4G0Z9 681 aa23.08■■□□□ 1.29
USP40-207ENST00000450940 FAM83BQ5T0W9 1011 aa23.08■■□□□ 1.29
USP40-207ENST00000450940 VPS53Q5VIR6 699 aa23.08■■□□□ 1.29
USP40-207ENST00000450940 ABRAQ8N0Z2 381 aa23.08■■□□□ 1.29
USP40-207ENST00000450940 CEP95Q96GE4 821 aa23.08■■□□□ 1.29
USP40-207ENST00000450940 HTATIP2Q9BUP3 242 aa23.08■■□□□ 1.29
USP40-207ENST00000450940 FLRT1Q9NZU1 646 aa23.08■■□□□ 1.29
USP40-207ENST00000450940 OGDHLQ9ULD0 1010 aa23.08■■□□□ 1.29
USP40-207ENST00000450940 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.08■■□□□ 1.29
USP40-207ENST00000450940 VWA5AO00534 786 aa23.07■■□□□ 1.28
USP40-207ENST00000450940 REPS2Q8NFH8 660 aa23.07■■□□□ 1.28
USP40-207ENST00000450940 NPLOC4Q8TAT6 608 aa23.07■■□□□ 1.28
USP40-207ENST00000450940 FAM227BQ96M60 508 aa23.07■■□□□ 1.28
USP40-207ENST00000450940 A0A0D9SFI3 127 aa23.06■■□□□ 1.28
USP40-207ENST00000450940 SLC25A27O95847 323 aa23.06■■□□□ 1.28
USP40-207ENST00000450940 TTLL1O95922 423 aa23.06■■□□□ 1.28
USP40-207ENST00000450940 NDUFB10O96000 172 aa23.06■■□□□ 1.28
USP40-207ENST00000450940 MNX1P50219 401 aaPredicted RBP23.06■■□□□ 1.28
USP40-207ENST00000450940 TRIM6-TRIM34B2RNG4 842 aa23.05■■□□□ 1.28
USP40-207ENST00000450940 FGRP09769 529 aa23.05■■□□□ 1.28
USP40-207ENST00000450940 TSPY3P0CV98 308 aa23.05■■□□□ 1.28
USP40-207ENST00000450940 TSPY8P0CW00 308 aa23.05■■□□□ 1.28
USP40-207ENST00000450940 ADORA2AP29274 412 aa23.05■■□□□ 1.28
USP40-207ENST00000450940 TFAP4Q01664 338 aa23.05■■□□□ 1.28
USP40-207ENST00000450940 PLS1Q14651 629 aa23.05■■□□□ 1.28
USP40-207ENST00000450940 MFSD14CQ5VZR4 134 aa23.05■■□□□ 1.28
USP40-207ENST00000450940 RIOX2Q8IUF8 465 aa23.05■■□□□ 1.28
USP40-207ENST00000450940 GMCL1P1Q8NEA9 526 aa23.05■■□□□ 1.28
USP40-207ENST00000450940 PAWRQ96IZ0 340 aaKnown RBP23.05■■□□□ 1.28
USP40-207ENST00000450940 ZNF214Q9UL59 606 aaPredicted RBP23.05■■□□□ 1.28
USP40-207ENST00000450940 ALPK3Q96L96 1907 aa23.04■■□□□ 1.28
USP40-207ENST00000450940 FRMPD3Q5JV73 1810 aa23.04■■□□□ 1.28
USP40-207ENST00000450940 COBLO75128 1261 aa23.04■■□□□ 1.28
USP40-207ENST00000450940 CCND3P30281 292 aaPredicted RBP23.04■■□□□ 1.28
USP40-207ENST00000450940 CTDSPL2Q05D32 466 aa23.04■■□□□ 1.28
USP40-207ENST00000450940 NMIQ13287 307 aaPredicted RBP23.04■■□□□ 1.28
USP40-207ENST00000450940 FAM47AQ5JRC9 791 aa23.04■■□□□ 1.28
USP40-207ENST00000450940 OLFML2BQ68BL8 750 aa23.04■■□□□ 1.28
USP40-207ENST00000450940 LHX8Q68G74 356 aa23.04■■□□□ 1.28
USP40-207ENST00000450940 DPF3Q92784 378 aa23.04■■□□□ 1.28
USP40-207ENST00000450940 NUP88Q99567 741 aaPredicted RBP23.04■■□□□ 1.28
USP40-207ENST00000450940 TACC3Q9Y6A5 838 aa23.04■■□□□ 1.28
USP40-207ENST00000450940 ZMYM6O95789 1325 aa23.04■■□□□ 1.28
USP40-207ENST00000450940 H0YGN5 161 aa23.03■■□□□ 1.28
USP40-207ENST00000450940 RAD21O60216 631 aa23.03■■□□□ 1.28
USP40-207ENST00000450940 FGAP02671 866 aa23.03■■□□□ 1.28
USP40-207ENST00000450940 STAT3P40763 770 aa23.03■■□□□ 1.28
USP40-207ENST00000450940 NECAB2Q7Z6G3 386 aa23.03■■□□□ 1.28
USP40-207ENST00000450940 DPP9Q86TI2 863 aa23.03■■□□□ 1.28
USP40-207ENST00000450940 NCAPG2Q86XI2 1143 aa23.03■■□□□ 1.28
USP40-207ENST00000450940 PRPF38AQ8NAV1 312 aaKnown RBP23.03■■□□□ 1.28
USP40-207ENST00000450940 RILPL2Q969X0 211 aa23.03■■□□□ 1.28
USP40-207ENST00000450940 SLF1Q9BQI6 1058 aa23.03■■□□□ 1.28
USP40-207ENST00000450940 ORC4O43929 436 aa23.02■■□□□ 1.28
USP40-207ENST00000450940 SLC34A2O95436 690 aa23.02■■□□□ 1.28
USP40-207ENST00000450940 HSPD1P10809 573 aaKnown RBP23.02■■□□□ 1.28
USP40-207ENST00000450940 SDSP20132 328 aa23.02■■□□□ 1.28
USP40-207ENST00000450940 COPB2P35606 906 aa23.02■■□□□ 1.28
USP40-207ENST00000450940 NOVP48745 357 aa23.02■■□□□ 1.28
USP40-207ENST00000450940 PPP4R3BQ5MIZ7 849 aa23.02■■□□□ 1.28
USP40-207ENST00000450940 SAMD1Q6SPF0 538 aaPredicted RBP23.02■■□□□ 1.28
USP40-207ENST00000450940 ZNF589Q86UQ0 364 aaPredicted RBP23.02■■□□□ 1.28
USP40-207ENST00000450940 DIS3LQ8TF46 1054 aaKnown RBP23.02■■□□□ 1.28
USP40-207ENST00000450940 INCENPQ9NQS7 918 aa23.02■■□□□ 1.28
USP40-207ENST00000450940 PLXNA1Q9UIW2 1896 aa23.01■■□□□ 1.27
USP40-207ENST00000450940 ATP2A1O14983 1001 aa23.01■■□□□ 1.27
USP40-207ENST00000450940 FCER1AP12319 257 aa23.01■■□□□ 1.27
USP40-207ENST00000450940 NBPF3Q9H094 633 aa23.01■■□□□ 1.27
USP40-207ENST00000450940 IL17RBQ9NRM6 502 aa23.01■■□□□ 1.27
USP40-207ENST00000450940 SLC5A4Q9NY91 659 aa23.01■■□□□ 1.27
USP40-207ENST00000450940 CCDC171Q6TFL3 1326 aa23.01■■□□□ 1.27
USP40-207ENST00000450940 CYP2C19P33261 490 aa23■■□□□ 1.27
USP40-207ENST00000450940 LRRC47Q8N1G4 583 aaKnown RBP23■■□□□ 1.27
USP40-207ENST00000450940 FEM1BQ9UK73 627 aa23■■□□□ 1.27
USP40-207ENST00000450940 NR2E3Q9Y5X4 410 aa23■■□□□ 1.27
USP40-207ENST00000450940 TSPY2A6NKD2 308 aa22.99■■□□□ 1.27
USP40-207ENST00000450940 CYBAP13498 195 aa22.99■■□□□ 1.27
USP40-207ENST00000450940 SLFN13Q68D06 897 aa22.99■■□□□ 1.27
USP40-207ENST00000450940 TRPV1Q8NER1 839 aa22.99■■□□□ 1.27
USP40-207ENST00000450940 GMCL1Q96IK5 515 aa22.99■■□□□ 1.27
USP40-207ENST00000450940 TEX13BQ9BXU2 312 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 213.4 ms