RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 TLR3O15455 904 aaKnown RBP6.61□□□□□ -1.35
VPS29-202ENST00000447578 GBP1P32455 592 aa6.61□□□□□ -1.35
VPS29-202ENST00000447578 SNAP47Q5SQN1 464 aa6.61□□□□□ -1.35
VPS29-202ENST00000447578 TMEM132EQ6IEE7 984 aa6.61□□□□□ -1.35
VPS29-202ENST00000447578 SPPL2CQ8IUH8 684 aa6.61□□□□□ -1.35
VPS29-202ENST00000447578 LINC01599Q8WXQ3 324 aa6.61□□□□□ -1.35
VPS29-202ENST00000447578 CRELD1Q96HD1 420 aa6.61□□□□□ -1.35
VPS29-202ENST00000447578 G6PC3Q9BUM1 346 aa6.61□□□□□ -1.35
VPS29-202ENST00000447578 RSRP1Q9BUV0 290 aa6.61□□□□□ -1.35
VPS29-202ENST00000447578 ZNF552Q9H707 407 aaPredicted RBP6.61□□□□□ -1.35
VPS29-202ENST00000447578 SORBS3O60504 671 aa6.6□□□□□ -1.35
VPS29-202ENST00000447578 ERCC3P19447 782 aa6.6□□□□□ -1.35
VPS29-202ENST00000447578 GARTP22102 1010 aa6.6□□□□□ -1.35
VPS29-202ENST00000447578 RPL10P27635 214 aaKnown RBP6.6□□□□□ -1.35
VPS29-202ENST00000447578 DUSP4Q13115 394 aa6.6□□□□□ -1.35
VPS29-202ENST00000447578 REC114Q7Z4M0 266 aa6.6□□□□□ -1.35
VPS29-202ENST00000447578 USHBP1Q8N6Y0 703 aa6.6□□□□□ -1.35
VPS29-202ENST00000447578 ANKS4BQ8N8V4 417 aa6.6□□□□□ -1.35
VPS29-202ENST00000447578 GCM1Q9NP62 436 aa6.6□□□□□ -1.35
VPS29-202ENST00000447578 ZNF281Q9Y2X9 895 aa6.6□□□□□ -1.35
VPS29-202ENST00000447578 PEX10O60683 326 aa6.59□□□□□ -1.35
VPS29-202ENST00000447578 USP2O75604 605 aaPredicted RBP6.59□□□□□ -1.35
VPS29-202ENST00000447578 UBOX5O94941 541 aa6.59□□□□□ -1.35
VPS29-202ENST00000447578 CHRNEQ04844 493 aa6.59□□□□□ -1.35
VPS29-202ENST00000447578 NMIQ13287 307 aaPredicted RBP6.59□□□□□ -1.35
VPS29-202ENST00000447578 MPP2Q14168 576 aa6.59□□□□□ -1.35
VPS29-202ENST00000447578 RELTQ969Z4 430 aa6.59□□□□□ -1.35
VPS29-202ENST00000447578 C20orf173Q96LM9 149 aa6.59□□□□□ -1.35
VPS29-202ENST00000447578 FOXP3Q9BZS1 431 aa6.59□□□□□ -1.35
VPS29-202ENST00000447578 COPRSQ9NQ92 184 aa6.59□□□□□ -1.35
VPS29-202ENST00000447578 VTI1BQ9UEU0 232 aa6.59□□□□□ -1.35
VPS29-202ENST00000447578 TEX51A0A1B0GUA7 166 aa6.58□□□□□ -1.36
VPS29-202ENST00000447578 SLC22A31A6NKX4 558 aa6.58□□□□□ -1.36
VPS29-202ENST00000447578 RGS13O14921 159 aa6.58□□□□□ -1.36
VPS29-202ENST00000447578 HOXA5P20719 270 aa6.58□□□□□ -1.36
VPS29-202ENST00000447578 SNW1Q13573 536 aaKnown RBP6.58□□□□□ -1.36
VPS29-202ENST00000447578 SNX17Q15036 470 aa6.58□□□□□ -1.36
VPS29-202ENST00000447578 ARSHQ5FYA8 562 aa6.58□□□□□ -1.36
VPS29-202ENST00000447578 ZPBP2Q6X784 338 aa6.58□□□□□ -1.36
VPS29-202ENST00000447578 WAPLQ7Z5K2 1190 aa6.58□□□□□ -1.36
VPS29-202ENST00000447578 TMC3Q7Z5M5 1100 aa6.58□□□□□ -1.36
VPS29-202ENST00000447578 HDAC8Q9BY41 377 aa6.58□□□□□ -1.36
VPS29-202ENST00000447578 ASCC2Q9H1I8 757 aaPredicted RBP6.58□□□□□ -1.36
VPS29-202ENST00000447578 ZMYM5Q9UJ78 669 aa6.58□□□□□ -1.36
VPS29-202ENST00000447578 SEMA7AO75326 666 aa6.57□□□□□ -1.36
VPS29-202ENST00000447578 SDHBP21912 280 aa6.57□□□□□ -1.36
VPS29-202ENST00000447578 CHMP4BP1P59074 171 aa6.57□□□□□ -1.36
VPS29-202ENST00000447578 ADGRF1Q5T601 910 aa6.57□□□□□ -1.36
VPS29-202ENST00000447578 FBXL19Q6PCT2 694 aa6.57□□□□□ -1.36
VPS29-202ENST00000447578 FAM196AQ6ZSG2 479 aa6.57□□□□□ -1.36
VPS29-202ENST00000447578 NLRX1Q86UT6 975 aa6.57□□□□□ -1.36
VPS29-202ENST00000447578 SYTL5Q8TDW5 730 aaPredicted RBP6.57□□□□□ -1.36
VPS29-202ENST00000447578 TCTN2Q96GX1 697 aa6.57□□□□□ -1.36
VPS29-202ENST00000447578 BRMS1Q9HCU9 246 aa6.57□□□□□ -1.36
VPS29-202ENST00000447578 MRS2Q9HD23 443 aa6.57□□□□□ -1.36
VPS29-202ENST00000447578 KBTBD4Q9NVX7 518 aa6.57□□□□□ -1.36
VPS29-202ENST00000447578 CNOT6Q9ULM6 557 aaKnown RBP6.57□□□□□ -1.36
VPS29-202ENST00000447578 MINPP1Q9UNW1 487 aa6.57□□□□□ -1.36
VPS29-202ENST00000447578 UNCXA6NJT0 531 aa6.56□□□□□ -1.36
VPS29-202ENST00000447578 FKTNO75072 461 aa6.56□□□□□ -1.36
VPS29-202ENST00000447578 RAG1P15918 1043 aa6.56□□□□□ -1.36
VPS29-202ENST00000447578 BMP7P18075 431 aa6.56□□□□□ -1.36
VPS29-202ENST00000447578 POLR2BP30876 1174 aaKnown RBP6.56□□□□□ -1.36
VPS29-202ENST00000447578 PWP1Q13610 501 aa6.56□□□□□ -1.36
VPS29-202ENST00000447578 SSPNQ14714 243 aa6.56□□□□□ -1.36
VPS29-202ENST00000447578 RNF111Q6ZNA4 994 aa6.56□□□□□ -1.36
VPS29-202ENST00000447578 ENOX1Q8TC92 643 aaKnown RBP6.56□□□□□ -1.36
VPS29-202ENST00000447578 KCTD3Q9Y597 815 aa6.56□□□□□ -1.36
VPS29-202ENST00000447578 PCDHB14Q9Y5E9 798 aa6.56□□□□□ -1.36
VPS29-202ENST00000447578 TMEM82A0PJX8 343 aa6.55□□□□□ -1.36
VPS29-202ENST00000447578 NBPF9Q3BBW0 867 aa6.55□□□□□ -1.36
VPS29-202ENST00000447578 CEP128Q6ZU80 1094 aa6.55□□□□□ -1.36
VPS29-202ENST00000447578 DAGLBQ8NCG7 672 aa6.55□□□□□ -1.36
VPS29-202ENST00000447578 PANK1Q8TE04 598 aa6.55□□□□□ -1.36
VPS29-202ENST00000447578 PARD6AQ9NPB6 346 aa6.55□□□□□ -1.36
VPS29-202ENST00000447578 TCFL5Q9UL49 500 aa6.55□□□□□ -1.36
VPS29-202ENST00000447578 OR14I1A6ND48 311 aa6.54□□□□□ -1.36
VPS29-202ENST00000447578 IGSF3O75054 1194 aa6.54□□□□□ -1.36
VPS29-202ENST00000447578 SRSF3P84103 164 aaKnown RBP6.54□□□□□ -1.36
VPS29-202ENST00000447578 KIR3DS1Q14943 382 aa6.54□□□□□ -1.36
VPS29-202ENST00000447578 SLC14A2Q15849 920 aa6.54□□□□□ -1.36
VPS29-202ENST00000447578 CWF19L2Q2TBE0 894 aaKnown RBP6.54□□□□□ -1.36
VPS29-202ENST00000447578 NBPF12Q5TAG4 269 aaPredicted RBP6.54□□□□□ -1.36
VPS29-202ENST00000447578 MAP6Q96JE9 813 aa6.54□□□□□ -1.36
VPS29-202ENST00000447578 HHIPL1Q96JK4 782 aa6.54□□□□□ -1.36
VPS29-202ENST00000447578 ZNF512BQ96KM6 892 aaPredicted RBP6.54□□□□□ -1.36
VPS29-202ENST00000447578 PLCD4Q9BRC7 762 aa6.54□□□□□ -1.36
VPS29-202ENST00000447578 BCL2L13Q9BXK5 485 aa6.54□□□□□ -1.36
VPS29-202ENST00000447578 ZCCHC4Q9H5U6 513 aa6.54□□□□□ -1.36
VPS29-202ENST00000447578 MBD1Q9UIS9 605 aaPredicted RBP6.54□□□□□ -1.36
VPS29-202ENST00000447578 SHROOM4Q9ULL8 1493 aa6.53□□□□□ -1.36
VPS29-202ENST00000447578 SSU72P8A0A1W2PR75 194 aa6.53□□□□□ -1.36
VPS29-202ENST00000447578 LOC105371045A0A1W2PR82 267 aa6.53□□□□□ -1.36
VPS29-202ENST00000447578 NRDCO43847 1150 aa6.53□□□□□ -1.36
VPS29-202ENST00000447578 PRAMEF1O95521 474 aa6.53□□□□□ -1.36
VPS29-202ENST00000447578 SYPP08247 313 aa6.53□□□□□ -1.36
VPS29-202ENST00000447578 CRKP46108 304 aa6.53□□□□□ -1.36
VPS29-202ENST00000447578 PCBP3P57721 371 aaKnown RBP6.53□□□□□ -1.36
VPS29-202ENST00000447578 RNF4P78317 190 aa6.53□□□□□ -1.36
VPS29-202ENST00000447578 MLECQ14165 292 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms