RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 MMP1P03956 469 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 PLCD1P51178 756 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 RESP18Q5W5W9 173 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 DTHD1Q6ZMT9 781 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 DYMQ7RTS9 669 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 CSGALNACT2Q8N6G5 542 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 N4BP2L2Q92802 583 aaPredicted RBP13.36□□□□□ -0.27
HMGB1-206ENST00000405805 STRBPQ96SI9 672 aaKnown RBP13.36□□□□□ -0.27
HMGB1-206ENST00000405805 ZNF446Q9NWS9 450 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 GEMIN8Q9NWZ8 242 aaKnown RBP13.36□□□□□ -0.27
HMGB1-206ENST00000405805 SAP30BPQ9UHR5 308 aaKnown RBP13.36□□□□□ -0.27
HMGB1-206ENST00000405805 GDAQ9Y2T3 454 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 MAP3K15Q6ZN16 1313 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 PIK3C2AO00443 1686 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 POTEB2H3BUK9 544 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 USO1O60763 962 aaKnown RBP13.35□□□□□ -0.27
HMGB1-206ENST00000405805 GOLGA8HP0CJ92 632 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 CXCR5P32302 372 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 SPATA1Q5VX52 437 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 SRGAP1Q7Z6B7 1085 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 NLRP10Q86W26 655 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 HDAC6Q9UBN7 1215 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 CDC23Q9UJX2 597 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 TNS3Q68CZ2 1445 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 KRT86O43790 486 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 NOP2P46087 812 aaKnown RBP13.35□□□□□ -0.27
HMGB1-206ENST00000405805 PLA2G4AP47712 749 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 NCAPHQ15003 741 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 RABGGTAQ92696 567 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 GOLGA6L10A0A0M3HER8 536 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 KCNJ18B7U540 433 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 NEFHP12036 1026 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 CYLC1P35663 651 aaPredicted RBP13.35□□□□□ -0.27
HMGB1-206ENST00000405805 EIF6P56537 245 aaKnown RBP13.35□□□□□ -0.27
HMGB1-206ENST00000405805 SPAG1Q07617 926 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 KCNJ12Q14500 433 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 CYP26C1Q6V0L0 522 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 RSRC1Q96IZ7 334 aaKnown RBP13.35□□□□□ -0.27
HMGB1-206ENST00000405805 SPATS2LQ9NUQ6 558 aaKnown RBP13.35□□□□□ -0.27
HMGB1-206ENST00000405805 A0A0U1RQJ8 604 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 TRIM49BA6NDI0 452 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 NMT2O60551 498 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 MORC3Q14149 939 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 E2F5Q15329 346 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 TCERG1LQ5VWI1 586 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 MAATS1Q7Z4T9 603 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 ZNF652Q9Y2D9 606 aa13.35□□□□□ -0.27
HMGB1-206ENST00000405805 PXDNLA1KZ92 1463 aa13.34□□□□□ -0.27
HMGB1-206ENST00000405805 PDE4DQ08499 809 aa13.34□□□□□ -0.27
HMGB1-206ENST00000405805 CCDC40Q4G0X9 1142 aa13.34□□□□□ -0.27
HMGB1-206ENST00000405805 TMED8Q6PL24 325 aaPredicted RBP13.34□□□□□ -0.27
HMGB1-206ENST00000405805 GPR108Q9NPR9 543 aa13.34□□□□□ -0.27
HMGB1-206ENST00000405805 TRIM10Q9UDY6 481 aa13.34□□□□□ -0.27
HMGB1-206ENST00000405805 PARP3Q9Y6F1 533 aa13.34□□□□□ -0.27
HMGB1-206ENST00000405805 SND1Q7KZF4 910 aaKnown RBP eCLIP13.34□□□□□ -0.27
HMGB1-206ENST00000405805 TMTC1Q8IUR5 882 aa13.34□□□□□ -0.27
HMGB1-206ENST00000405805 CPVLQ9H3G5 476 aa13.34□□□□□ -0.27
HMGB1-206ENST00000405805 LY9Q9HBG7 655 aa13.34□□□□□ -0.27
HMGB1-206ENST00000405805 TBC1D7Q9P0N9 293 aa13.34□□□□□ -0.27
HMGB1-206ENST00000405805 SOS2Q07890 1332 aaPredicted RBP13.34□□□□□ -0.27
HMGB1-206ENST00000405805 SATB1Q01826 763 aa13.34□□□□□ -0.27
HMGB1-206ENST00000405805 FAM98CQ17RN3 349 aaKnown RBP13.34□□□□□ -0.27
HMGB1-206ENST00000405805 TYW1BQ6NUM6 668 aa13.34□□□□□ -0.27
HMGB1-206ENST00000405805 ENOX1Q8TC92 643 aaKnown RBP13.34□□□□□ -0.27
HMGB1-206ENST00000405805 JAKMIP2Q96AA8 810 aa13.34□□□□□ -0.27
HMGB1-206ENST00000405805 NOC4LQ9BVI4 516 aaKnown RBP13.34□□□□□ -0.27
HMGB1-206ENST00000405805 TTF2Q9UNY4 1162 aaKnown RBP13.34□□□□□ -0.27
HMGB1-206ENST00000405805 EPN1Q9Y6I3 576 aaPredicted RBP13.34□□□□□ -0.27
HMGB1-206ENST00000405805 F8W031 263 aaPredicted RBP13.33□□□□□ -0.27
HMGB1-206ENST00000405805 N4BP1O75113 896 aaKnown RBP13.33□□□□□ -0.27
HMGB1-206ENST00000405805 TSPY3P0CV98 308 aa13.33□□□□□ -0.27
HMGB1-206ENST00000405805 TSPY8P0CW00 308 aa13.33□□□□□ -0.27
HMGB1-206ENST00000405805 NAPAP54920 295 aa13.33□□□□□ -0.27
HMGB1-206ENST00000405805 INF2Q27J81 1249 aa13.33□□□□□ -0.27
HMGB1-206ENST00000405805 CRACR2BQ8N4Y2 399 aaPredicted RBP13.33□□□□□ -0.27
HMGB1-206ENST00000405805 NLRC4Q9NPP4 1024 aa13.33□□□□□ -0.27
HMGB1-206ENST00000405805 FHOD1Q9Y613 1164 aa13.33□□□□□ -0.27
HMGB1-206ENST00000405805 KIF13AQ9H1H9 1805 aa13.33□□□□□ -0.28
HMGB1-206ENST00000405805 AKAP12Q02952 1782 aa13.33□□□□□ -0.28
HMGB1-206ENST00000405805 NDUFAB1O14561 156 aa13.33□□□□□ -0.28
HMGB1-206ENST00000405805 FMNL1O95466 1100 aaPredicted RBP13.33□□□□□ -0.28
HMGB1-206ENST00000405805 IFNAR1P17181 557 aa13.33□□□□□ -0.28
HMGB1-206ENST00000405805 RBBP5Q15291 538 aaKnown RBP13.33□□□□□ -0.28
HMGB1-206ENST00000405805 UBE3CQ15386 1083 aa13.33□□□□□ -0.28
HMGB1-206ENST00000405805 PTPREP23469 700 aa13.33□□□□□ -0.28
HMGB1-206ENST00000405805 KIF5BP33176 963 aa13.33□□□□□ -0.28
HMGB1-206ENST00000405805 ACTN2P35609 894 aa13.33□□□□□ -0.28
HMGB1-206ENST00000405805 PRPF4BQ13523 1007 aaKnown RBP13.33□□□□□ -0.28
HMGB1-206ENST00000405805 RAD9BQ6WBX8 426 aa13.33□□□□□ -0.28
HMGB1-206ENST00000405805 REXO1L1PQ8IX06 675 aa13.33□□□□□ -0.28
HMGB1-206ENST00000405805 FAM204AQ9H8W3 233 aa13.33□□□□□ -0.28
HMGB1-206ENST00000405805 UTYO14607 1347 aa13.33□□□□□ -0.28
HMGB1-206ENST00000405805 TXKP42681 527 aa13.32□□□□□ -0.28
HMGB1-206ENST00000405805 TC2NQ8N9U0 490 aa13.32□□□□□ -0.28
HMGB1-206ENST00000405805 PAGE5Q96GU1 130 aa13.32□□□□□ -0.28
HMGB1-206ENST00000405805 SEC63Q9UGP8 760 aaKnown RBP13.32□□□□□ -0.28
HMGB1-206ENST00000405805 ODF2LQ9ULJ1 636 aa13.32□□□□□ -0.28
HMGB1-206ENST00000405805 CIAO1O76071 339 aa13.32□□□□□ -0.28
HMGB1-206ENST00000405805 COPB1P53618 953 aaKnown RBP13.32□□□□□ -0.28
HMGB1-206ENST00000405805 RIN2Q8WYP3 895 aaPredicted RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms