RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 SCG2P13521 617 aa31■■■□□ 2.55
MSX1-201ENST00000382723 VEGFAP15692 232 aaPredicted RBP31■■■□□ 2.55
MSX1-201ENST00000382723 PFKFB3Q16875 520 aaPredicted RBP31■■■□□ 2.55
MSX1-201ENST00000382723 RGS22Q8NE09 1264 aa31■■■□□ 2.55
MSX1-201ENST00000382723 RBM27Q9P2N5 1060 aaKnown RBP31■■■□□ 2.55
MSX1-201ENST00000382723 XBP1P17861 261 aa30.99■■■□□ 2.55
MSX1-201ENST00000382723 SLC1A4P43007 532 aa30.99■■■□□ 2.55
MSX1-201ENST00000382723 KIF23Q02241 960 aaPredicted RBP30.99■■■□□ 2.55
MSX1-201ENST00000382723 EAPPQ56P03 285 aaPredicted RBP30.99■■■□□ 2.55
MSX1-201ENST00000382723 GMCL1P1Q8NEA9 526 aa30.99■■■□□ 2.55
MSX1-201ENST00000382723 KIF28PB7ZC32 967 aa30.98■■■□□ 2.55
MSX1-201ENST00000382723 CTNND1O60716 968 aaKnown RBP30.98■■■□□ 2.55
MSX1-201ENST00000382723 INPP5BP32019 993 aa30.98■■■□□ 2.55
MSX1-201ENST00000382723 GNL2Q13823 731 aaKnown RBP30.98■■■□□ 2.55
MSX1-201ENST00000382723 GPATCH4Q5T3I0 446 aaKnown RBP30.98■■■□□ 2.55
MSX1-201ENST00000382723 TTBK2Q6IQ55 1244 aa30.98■■■□□ 2.55
MSX1-201ENST00000382723 DCAF4Q8WV16 495 aa30.98■■■□□ 2.55
MSX1-201ENST00000382723 SHISA4Q96DD7 197 aa30.98■■■□□ 2.55
MSX1-201ENST00000382723 PRPF40AO75400 957 aaKnown RBP30.98■■■□□ 2.55
MSX1-201ENST00000382723 NDUFB10O96000 172 aa30.98■■■□□ 2.55
MSX1-201ENST00000382723 MMP1P03956 469 aa30.98■■■□□ 2.55
MSX1-201ENST00000382723 SUPT20HL1Q3ZLR7 823 aa30.98■■■□□ 2.55
MSX1-201ENST00000382723 HOMER1Q86YM7 354 aa30.98■■■□□ 2.55
MSX1-201ENST00000382723 IQCA1LA6NCM1 817 aa30.97■■■□□ 2.55
MSX1-201ENST00000382723 KRT26Q7Z3Y9 468 aa30.97■■■□□ 2.55
MSX1-201ENST00000382723 WRNIP1Q96S55 665 aa30.97■■■□□ 2.55
MSX1-201ENST00000382723 NUP88Q99567 741 aaPredicted RBP30.97■■■□□ 2.55
MSX1-201ENST00000382723 TAF1DQ9H5J8 278 aaPredicted RBP30.97■■■□□ 2.55
MSX1-201ENST00000382723 TMX2Q9Y320 296 aa30.97■■■□□ 2.55
MSX1-201ENST00000382723 FIBPO43427 364 aa30.96■■■□□ 2.55
MSX1-201ENST00000382723 SMARCA1P28370 1054 aa30.96■■■□□ 2.55
MSX1-201ENST00000382723 PRKG1Q13976 671 aa30.96■■■□□ 2.55
MSX1-201ENST00000382723 SAFBQ15424 915 aaKnown RBP eCLIP30.96■■■□□ 2.55
MSX1-201ENST00000382723 SPICE1Q8N0Z3 855 aa30.96■■■□□ 2.55
MSX1-201ENST00000382723 GPKOWQ92917 476 aaPredicted RBP eCLIP30.96■■■□□ 2.55
MSX1-201ENST00000382723 RRP36Q96EU6 259 aaKnown RBP30.96■■■□□ 2.55
MSX1-201ENST00000382723 TFIP11Q9UBB9 837 aaKnown RBP30.96■■■□□ 2.55
MSX1-201ENST00000382723 POTECB2RU33 542 aa30.96■■■□□ 2.55
MSX1-201ENST00000382723 SLC16A2P36021 539 aa30.96■■■□□ 2.55
MSX1-201ENST00000382723 GLIS2Q9BZE0 524 aaPredicted RBP30.96■■■□□ 2.55
MSX1-201ENST00000382723 SSC5DA1L4H1 1573 aa30.95■■■□□ 2.55
MSX1-201ENST00000382723 KRT85P78386 507 aa30.95■■■□□ 2.55
MSX1-201ENST00000382723 ZYXQ15942 572 aaKnown RBP30.95■■■□□ 2.55
MSX1-201ENST00000382723 PIGSQ96S52 555 aa30.95■■■□□ 2.55
MSX1-201ENST00000382723 RIOX1Q9H6W3 641 aa30.95■■■□□ 2.55
MSX1-201ENST00000382723 SYNPO2Q9UMS6 1093 aa30.95■■■□□ 2.55
MSX1-201ENST00000382723 DIS3L2Q8IYB7 885 aaKnown RBP30.94■■■□□ 2.54
MSX1-201ENST00000382723 ZKSCAN4Q969J2 545 aaPredicted RBP30.94■■■□□ 2.54
MSX1-201ENST00000382723 GMCL1Q96IK5 515 aa30.94■■■□□ 2.54
MSX1-201ENST00000382723 GOPCQ9HD26 462 aa30.94■■■□□ 2.54
MSX1-201ENST00000382723 LMBRD1Q9NUN5 540 aa30.94■■■□□ 2.54
MSX1-201ENST00000382723 SEC63Q9UGP8 760 aaKnown RBP30.94■■■□□ 2.54
MSX1-201ENST00000382723 ZNF112Q9UJU3 913 aa30.94■■■□□ 2.54
MSX1-201ENST00000382723 BAZ2BQ9UIF8 2168 aaKnown RBP30.94■■■□□ 2.54
MSX1-201ENST00000382723 HEATR3Q7Z4Q2 680 aa30.94■■■□□ 2.54
MSX1-201ENST00000382723 USP48Q86UV5 1035 aa30.94■■■□□ 2.54
MSX1-201ENST00000382723 PHF20Q9BVI0 1012 aa30.94■■■□□ 2.54
MSX1-201ENST00000382723 BTBD18B2RXH4 712 aa30.93■■■□□ 2.54
MSX1-201ENST00000382723 BRAPQ7Z569 592 aa30.93■■■□□ 2.54
MSX1-201ENST00000382723 ADGRF4Q8IZF3 695 aa30.93■■■□□ 2.54
MSX1-201ENST00000382723 ZC3H15Q8WU90 426 aaKnown RBP30.93■■■□□ 2.54
MSX1-201ENST00000382723 MYH6P13533 1939 aa30.93■■■□□ 2.54
MSX1-201ENST00000382723 KIAA1755Q5JYT7 1200 aa30.92■■■□□ 2.54
MSX1-201ENST00000382723 SH2D4AQ9H788 454 aa30.92■■■□□ 2.54
MSX1-201ENST00000382723 PTMSP20962 102 aa30.92■■■□□ 2.54
MSX1-201ENST00000382723 WWC2Q6AWC2 1192 aa30.92■■■□□ 2.54
MSX1-201ENST00000382723 FEZ1Q99689 392 aa30.92■■■□□ 2.54
MSX1-201ENST00000382723 GINM1Q9NU53 330 aa30.92■■■□□ 2.54
MSX1-201ENST00000382723 BMP3P12645 472 aa30.91■■■□□ 2.54
MSX1-201ENST00000382723 U2AF2P26368 475 aaKnown RBP eCLIP30.91■■■□□ 2.54
MSX1-201ENST00000382723 NLRP5P59047 1200 aa30.91■■■□□ 2.54
MSX1-201ENST00000382723 SCYL3Q8IZE3 742 aa30.91■■■□□ 2.54
MSX1-201ENST00000382723 OXER1Q8TDS5 423 aa30.91■■■□□ 2.54
MSX1-201ENST00000382723 KLRG1Q96E93 195 aa30.91■■■□□ 2.54
MSX1-201ENST00000382723 JMJD4Q9H9V9 463 aa30.91■■■□□ 2.54
MSX1-201ENST00000382723 POLR2AP24928 1970 aaKnown RBP30.91■■■□□ 2.54
MSX1-201ENST00000382723 CEBPZQ03701 1054 aaKnown RBP30.9■■■□□ 2.54
MSX1-201ENST00000382723 IKQ13123 557 aaPredicted RBP30.9■■■□□ 2.54
MSX1-201ENST00000382723 USP17L10C9JJH3 530 aa30.9■■■□□ 2.54
MSX1-201ENST00000382723 NR5A1Q13285 461 aa30.9■■■□□ 2.54
MSX1-201ENST00000382723 PNMA8AQ86V59 439 aaPredicted RBP30.9■■■□□ 2.54
MSX1-201ENST00000382723 ZNF396Q96N95 335 aaPredicted RBP30.9■■■□□ 2.54
MSX1-201ENST00000382723 FTOQ9C0B1 505 aaKnown RBP eCLIP30.9■■■□□ 2.54
MSX1-201ENST00000382723 VCPKMTQ9H867 229 aa30.9■■■□□ 2.54
MSX1-201ENST00000382723 PICK1Q9NRD5 415 aa30.9■■■□□ 2.54
MSX1-201ENST00000382723 TMEM232C9JQI7 657 aa30.89■■■□□ 2.54
MSX1-201ENST00000382723 BARHL2Q9NY43 387 aa30.89■■■□□ 2.54
MSX1-201ENST00000382723 KRT2P35908 639 aa30.88■■■□□ 2.53
MSX1-201ENST00000382723 MYSM1Q5VVJ2 828 aa30.88■■■□□ 2.53
MSX1-201ENST00000382723 TYW1BQ6NUM6 668 aa30.88■■■□□ 2.53
MSX1-201ENST00000382723 FOXP1Q9H334 677 aaPredicted RBP30.88■■■□□ 2.53
MSX1-201ENST00000382723 SH3GLB2Q9NR46 395 aa30.88■■■□□ 2.53
MSX1-201ENST00000382723 CLEC11AQ9Y240 323 aa30.88■■■□□ 2.53
MSX1-201ENST00000382723 ATAD5Q96QE3 1844 aa30.88■■■□□ 2.53
MSX1-201ENST00000382723 STXBP3O00186 592 aa30.88■■■□□ 2.53
MSX1-201ENST00000382723 TRAK2O60296 914 aa30.88■■■□□ 2.53
MSX1-201ENST00000382723 USP2O75604 605 aaPredicted RBP30.88■■■□□ 2.53
MSX1-201ENST00000382723 TPRNQ4KMQ1 711 aa30.88■■■□□ 2.53
MSX1-201ENST00000382723 NOSTRINQ8IVI9 506 aa30.88■■■□□ 2.53
MSX1-201ENST00000382723 BRMS1Q9HCU9 246 aa30.88■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms