RNA–Protein interactions for RNA: ENST00000343575.10

CXCL12-201, Transcript of C-X-C motif chemokine ligand 12, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CXCL12, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-201ENST00000343575 KLRF2D3W0D1 207 aa17.01■□□□□ 0.31
CXCL12-201ENST00000343575 GUCY1B3Q02153 619 aa17.01■□□□□ 0.31
CXCL12-201ENST00000343575 KIAA1755Q5JYT7 1200 aa17.01■□□□□ 0.31
CXCL12-201ENST00000343575 PPP4R3BQ5MIZ7 849 aa17.01■□□□□ 0.31
CXCL12-201ENST00000343575 IQCA1LA6NCM1 817 aa17.01■□□□□ 0.31
CXCL12-201ENST00000343575 CTNND1O60716 968 aaKnown RBP17.01■□□□□ 0.31
CXCL12-201ENST00000343575 PARP1P09874 1014 aaKnown RBP17.01■□□□□ 0.31
CXCL12-201ENST00000343575 PDIA4P13667 645 aaKnown RBP17.01■□□□□ 0.31
CXCL12-201ENST00000343575 ZNF543Q08ER8 600 aa17.01■□□□□ 0.31
CXCL12-201ENST00000343575 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.01■□□□□ 0.31
CXCL12-201ENST00000343575 KRT26Q7Z3Y9 468 aa17.01■□□□□ 0.31
CXCL12-201ENST00000343575 FERMT3Q86UX7 667 aa17.01■□□□□ 0.31
CXCL12-201ENST00000343575 KIF3AQ9Y496 699 aa17.01■□□□□ 0.31
CXCL12-201ENST00000343575 MYH6P13533 1939 aa17.01■□□□□ 0.31
CXCL12-201ENST00000343575 F5H6K3 240 aa17■□□□□ 0.31
CXCL12-201ENST00000343575 DEXIO95424 95 aa17■□□□□ 0.31
CXCL12-201ENST00000343575 ASNSP08243 561 aa17■□□□□ 0.31
CXCL12-201ENST00000343575 KLRC3Q07444 240 aa17■□□□□ 0.31
CXCL12-201ENST00000343575 SULF1Q8IWU6 871 aa17■□□□□ 0.31
CXCL12-201ENST00000343575 TRIM22Q8IYM9 498 aa17■□□□□ 0.31
CXCL12-201ENST00000343575 KLRG1Q96E93 195 aa17■□□□□ 0.31
CXCL12-201ENST00000343575 C8orf76Q96K31 380 aa17■□□□□ 0.31
CXCL12-201ENST00000343575 ZNF341Q9BYN7 854 aa17■□□□□ 0.31
CXCL12-201ENST00000343575 TMX2Q9Y320 296 aa17■□□□□ 0.31
CXCL12-201ENST00000343575 FRMPD2Q68DX3 1309 aaPredicted RBP17■□□□□ 0.31
CXCL12-201ENST00000343575 USP2O75604 605 aaPredicted RBP16.99■□□□□ 0.31
CXCL12-201ENST00000343575 BAG4O95429 457 aaKnown RBP16.99■□□□□ 0.31
CXCL12-201ENST00000343575 NASPP49321 788 aaPredicted RBP16.99■□□□□ 0.31
CXCL12-201ENST00000343575 GNAQP50148 359 aa16.99■□□□□ 0.31
CXCL12-201ENST00000343575 RESTQ13127 1097 aa16.99■□□□□ 0.31
CXCL12-201ENST00000343575 DCAF15Q66K64 600 aa16.99■□□□□ 0.31
CXCL12-201ENST00000343575 TTBK2Q6IQ55 1244 aa16.99■□□□□ 0.31
CXCL12-201ENST00000343575 GMCL1P1Q8NEA9 526 aa16.99■□□□□ 0.31
CXCL12-201ENST00000343575 ZKSCAN4Q969J2 545 aaPredicted RBP16.99■□□□□ 0.31
CXCL12-201ENST00000343575 MAP7D2Q96T17 732 aa16.99■□□□□ 0.31
CXCL12-201ENST00000343575 SPZ1Q9BXG8 430 aa16.99■□□□□ 0.31
CXCL12-201ENST00000343575 UBA5Q9GZZ9 404 aa16.99■□□□□ 0.31
CXCL12-201ENST00000343575 SUPT20HL1Q3ZLR7 823 aa16.99■□□□□ 0.31
CXCL12-201ENST00000343575 ASPRV1Q53RT3 343 aa16.99■□□□□ 0.31
CXCL12-201ENST00000343575 EAPPQ56P03 285 aaPredicted RBP16.99■□□□□ 0.31
CXCL12-201ENST00000343575 KRT40Q6A162 431 aa16.99■□□□□ 0.31
CXCL12-201ENST00000343575 FAM173BQ6P4H8 233 aa16.99■□□□□ 0.31
CXCL12-201ENST00000343575 USP48Q86UV5 1035 aa16.99■□□□□ 0.31
CXCL12-201ENST00000343575 GAS2L3Q86XJ1 694 aa16.99■□□□□ 0.31
CXCL12-201ENST00000343575 RIOX1Q9H6W3 641 aa16.99■□□□□ 0.31
CXCL12-201ENST00000343575 SYNPO2Q9UMS6 1093 aa16.99■□□□□ 0.31
CXCL12-201ENST00000343575 H3BQV1 296 aa16.98■□□□□ 0.31
CXCL12-201ENST00000343575 OFD1O75665 1012 aa16.98■□□□□ 0.31
CXCL12-201ENST00000343575 NDUFB10O96000 172 aa16.98■□□□□ 0.31
CXCL12-201ENST00000343575 SMARCA1P28370 1054 aa16.98■□□□□ 0.31
CXCL12-201ENST00000343575 ZNF445P59923 1031 aa16.98■□□□□ 0.31
CXCL12-201ENST00000343575 FOXD4L6Q3SYB3 417 aaPredicted RBP16.98■□□□□ 0.31
CXCL12-201ENST00000343575 IFFO2Q5TF58 517 aa16.98■□□□□ 0.31
CXCL12-201ENST00000343575 SLFN13Q68D06 897 aa16.98■□□□□ 0.31
CXCL12-201ENST00000343575 FOXD4L3Q6VB84 417 aaPredicted RBP16.98■□□□□ 0.31
CXCL12-201ENST00000343575 KCTD1Q719H9 257 aa16.98■□□□□ 0.31
CXCL12-201ENST00000343575 RGS22Q8NE09 1264 aa16.98■□□□□ 0.31
CXCL12-201ENST00000343575 WRNIP1Q96S55 665 aa16.98■□□□□ 0.31
CXCL12-201ENST00000343575 GPCPD1Q9NPB8 672 aa16.98■□□□□ 0.31
CXCL12-201ENST00000343575 TCHHQ07283 1943 aa16.98■□□□□ 0.31
CXCL12-201ENST00000343575 PAPPA2Q9BXP8 1791 aa16.97■□□□□ 0.31
CXCL12-201ENST00000343575 PFKFB3Q16875 520 aaPredicted RBP16.97■□□□□ 0.31
CXCL12-201ENST00000343575 PNMA8AQ86V59 439 aaPredicted RBP16.97■□□□□ 0.31
CXCL12-201ENST00000343575 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.97■□□□□ 0.31
CXCL12-201ENST00000343575 PIBF1Q8WXW3 757 aa16.97■□□□□ 0.31
CXCL12-201ENST00000343575 HOOK2Q96ED9 719 aa16.97■□□□□ 0.31
CXCL12-201ENST00000343575 NUP88Q99567 741 aaPredicted RBP16.97■□□□□ 0.31
CXCL12-201ENST00000343575 LZTS2Q9BRK4 669 aa16.97■□□□□ 0.31
CXCL12-201ENST00000343575 RRAGCQ9HB90 399 aa16.97■□□□□ 0.31
CXCL12-201ENST00000343575 DOCK1Q14185 1865 aa16.97■□□□□ 0.31
CXCL12-201ENST00000343575 KIF28PB7ZC32 967 aa16.97■□□□□ 0.31
CXCL12-201ENST00000343575 GMCL1Q96IK5 515 aa16.97■□□□□ 0.31
CXCL12-201ENST00000343575 ARHGEF10LQ9HCE6 1279 aa16.97■□□□□ 0.31
CXCL12-201ENST00000343575 GINM1Q9NU53 330 aa16.97■□□□□ 0.31
CXCL12-201ENST00000343575 SCG2P13521 617 aa16.96■□□□□ 0.31
CXCL12-201ENST00000343575 MSNP26038 577 aaKnown RBP16.96■□□□□ 0.31
CXCL12-201ENST00000343575 SLC1A4P43007 532 aa16.96■□□□□ 0.31
CXCL12-201ENST00000343575 PRKG1Q13976 671 aa16.96■□□□□ 0.31
CXCL12-201ENST00000343575 NPY5RQ15761 445 aa16.96■□□□□ 0.31
CXCL12-201ENST00000343575 GPATCH4Q5T3I0 446 aaKnown RBP16.96■□□□□ 0.31
CXCL12-201ENST00000343575 TYW1BQ6NUM6 668 aa16.96■□□□□ 0.31
CXCL12-201ENST00000343575 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.96■□□□□ 0.31
CXCL12-201ENST00000343575 SCYL3Q8IZE3 742 aa16.96■□□□□ 0.31
CXCL12-201ENST00000343575 SPICE1Q8N0Z3 855 aa16.96■□□□□ 0.31
CXCL12-201ENST00000343575 DCAF4Q8WV16 495 aa16.96■□□□□ 0.31
CXCL12-201ENST00000343575 WASF1Q92558 559 aa16.96■□□□□ 0.31
CXCL12-201ENST00000343575 CDCA5Q96FF9 252 aa16.96■□□□□ 0.31
CXCL12-201ENST00000343575 VPS54Q9P1Q0 977 aa16.96■□□□□ 0.31
CXCL12-201ENST00000343575 KCNJ14Q9UNX9 436 aa16.96■□□□□ 0.31
CXCL12-201ENST00000343575 PTPRAP18433 802 aa16.95■□□□□ 0.3
CXCL12-201ENST00000343575 SLC16A2P36021 539 aa16.95■□□□□ 0.3
CXCL12-201ENST00000343575 KIF23Q02241 960 aaPredicted RBP16.95■□□□□ 0.3
CXCL12-201ENST00000343575 VCPKMTQ9H867 229 aa16.95■□□□□ 0.3
CXCL12-201ENST00000343575 JMJD4Q9H9V9 463 aa16.95■□□□□ 0.3
CXCL12-201ENST00000343575 PHIPQ8WWQ0 1821 aa16.95■□□□□ 0.3
CXCL12-201ENST00000343575 ADAMTS3O15072 1205 aa16.95■□□□□ 0.3
CXCL12-201ENST00000343575 RAD21O60216 631 aa16.95■□□□□ 0.3
CXCL12-201ENST00000343575 MMP1P03956 469 aa16.95■□□□□ 0.3
CXCL12-201ENST00000343575 AKAP17AQ02040 695 aaKnown RBP16.95■□□□□ 0.3
CXCL12-201ENST00000343575 DNM1Q05193 864 aaKnown RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms