RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 CCDC51Q96ER9 411 aa24.85■■□□□ 1.57
SHMT1-201ENST00000316694 ITIH6Q6UXX5 1313 aa24.85■■□□□ 1.57
SHMT1-201ENST00000316694 ROBO1Q9Y6N7 1651 aa24.84■■□□□ 1.57
SHMT1-201ENST00000316694 ABL1P00519 1130 aa24.84■■□□□ 1.57
SHMT1-201ENST00000316694 FGRP09769 529 aa24.84■■□□□ 1.57
SHMT1-201ENST00000316694 SMIM5Q71RC9 77 aa24.84■■□□□ 1.57
SHMT1-201ENST00000316694 SLC35F6Q8N357 371 aa24.84■■□□□ 1.57
SHMT1-201ENST00000316694 NELFBQ8WX92 580 aa24.84■■□□□ 1.57
SHMT1-201ENST00000316694 FAM84BQ96KN1 310 aaPredicted RBP24.84■■□□□ 1.57
SHMT1-201ENST00000316694 FUT8Q9BYC5 575 aa24.84■■□□□ 1.57
SHMT1-201ENST00000316694 UBXN6Q9BZV1 441 aa24.84■■□□□ 1.57
SHMT1-201ENST00000316694 LIMA1Q9UHB6 759 aaKnown RBP24.84■■□□□ 1.57
SHMT1-201ENST00000316694 RWDD2AQ9UIY3 292 aa24.84■■□□□ 1.57
SHMT1-201ENST00000316694 CTAGE9A4FU28 777 aa24.84■■□□□ 1.57
SHMT1-201ENST00000316694 GTPBP6O43824 516 aaPredicted RBP24.84■■□□□ 1.57
SHMT1-201ENST00000316694 PCP11498 1178 aaKnown RBP24.84■■□□□ 1.57
SHMT1-201ENST00000316694 ABHD10Q9NUJ1 306 aa24.84■■□□□ 1.57
SHMT1-201ENST00000316694 ZKSCAN7Q9P0L1 754 aaPredicted RBP24.84■■□□□ 1.57
SHMT1-201ENST00000316694 RNF225M0QZC1 329 aaPredicted RBP24.83■■□□□ 1.57
SHMT1-201ENST00000316694 COPB1P53618 953 aaKnown RBP24.83■■□□□ 1.57
SHMT1-201ENST00000316694 ERVK-24P63145 666 aa24.83■■□□□ 1.57
SHMT1-201ENST00000316694 LONRF2Q1L5Z9 754 aa24.83■■□□□ 1.57
SHMT1-201ENST00000316694 SLC4A8Q2Y0W8 1093 aa24.83■■□□□ 1.57
SHMT1-201ENST00000316694 JAKMIP3Q5VZ66 844 aa24.83■■□□□ 1.57
SHMT1-201ENST00000316694 CEP112Q8N8E3 955 aa24.83■■□□□ 1.57
SHMT1-201ENST00000316694 ANKRD20A12PQ8NF67 263 aa24.83■■□□□ 1.57
SHMT1-201ENST00000316694 CDCA7Q9BWT1 371 aaPredicted RBP24.83■■□□□ 1.57
SHMT1-201ENST00000316694 TTF2Q9UNY4 1162 aaKnown RBP24.83■■□□□ 1.57
SHMT1-201ENST00000316694 MYH13Q9UKX3 1938 aa24.83■■□□□ 1.56
SHMT1-201ENST00000316694 KCNJ18B7U540 433 aa24.83■■□□□ 1.56
SHMT1-201ENST00000316694 TFRCP02786 760 aaKnown RBP24.83■■□□□ 1.56
SHMT1-201ENST00000316694 KCNJ12Q14500 433 aa24.83■■□□□ 1.56
SHMT1-201ENST00000316694 TMTC1Q8IUR5 882 aa24.83■■□□□ 1.56
SHMT1-201ENST00000316694 MINPP1Q9UNW1 487 aa24.83■■□□□ 1.56
SHMT1-201ENST00000316694 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.83■■□□□ 1.56
SHMT1-201ENST00000316694 CCDC151A5D8V7 595 aa24.82■■□□□ 1.56
SHMT1-201ENST00000316694 CYP2D6P10635 497 aa24.82■■□□□ 1.56
SHMT1-201ENST00000316694 BICDL1Q6ZP65 573 aa24.82■■□□□ 1.56
SHMT1-201ENST00000316694 GDAQ9Y2T3 454 aa24.82■■□□□ 1.56
SHMT1-201ENST00000316694 TRAPPC10P48553 1259 aa24.81■■□□□ 1.56
SHMT1-201ENST00000316694 MECOMQ03112 1051 aa24.81■■□□□ 1.56
SHMT1-201ENST00000316694 PFKFB3Q16875 520 aaPredicted RBP24.81■■□□□ 1.56
SHMT1-201ENST00000316694 TCP11X2Q5H9J9 407 aa24.81■■□□□ 1.56
SHMT1-201ENST00000316694 BSDC1Q9NW68 430 aaPredicted RBP24.81■■□□□ 1.56
SHMT1-201ENST00000316694 RPN1P04843 607 aaKnown RBP24.81■■□□□ 1.56
SHMT1-201ENST00000316694 KLRK1P26718 216 aa24.81■■□□□ 1.56
SHMT1-201ENST00000316694 SPAG1Q07617 926 aa24.81■■□□□ 1.56
SHMT1-201ENST00000316694 ZNF658Q5TYW1 1059 aaPredicted RBP24.81■■□□□ 1.56
SHMT1-201ENST00000316694 NSUN4Q96CB9 384 aaKnown RBP24.81■■□□□ 1.56
SHMT1-201ENST00000316694 ANKZF1Q9H8Y5 726 aa24.81■■□□□ 1.56
SHMT1-201ENST00000316694 ZNF652Q9Y2D9 606 aa24.81■■□□□ 1.56
SHMT1-201ENST00000316694 LAMB2P55268 1798 aa24.81■■□□□ 1.56
SHMT1-201ENST00000316694 DLEC1Q9Y238 1755 aa24.81■■□□□ 1.56
SHMT1-201ENST00000316694 TSPY2A6NKD2 308 aa24.8■■□□□ 1.56
SHMT1-201ENST00000316694 ST5P78524 1137 aa24.8■■□□□ 1.56
SHMT1-201ENST00000316694 BRD3Q15059 726 aa24.8■■□□□ 1.56
SHMT1-201ENST00000316694 CYP26C1Q6V0L0 522 aa24.8■■□□□ 1.56
SHMT1-201ENST00000316694 PYM1Q9BRP8 204 aaKnown RBP24.8■■□□□ 1.56
SHMT1-201ENST00000316694 DCP1AQ9NPI6 582 aaPredicted RBP24.8■■□□□ 1.56
SHMT1-201ENST00000316694 LRRC10BA6NIK2 292 aa24.8■■□□□ 1.56
SHMT1-201ENST00000316694 ORC4O43929 436 aa24.8■■□□□ 1.56
SHMT1-201ENST00000316694 FECHP22830 423 aa24.8■■□□□ 1.56
SHMT1-201ENST00000316694 CRNKL1Q9BZJ0 848 aaKnown RBP24.8■■□□□ 1.56
SHMT1-201ENST00000316694 A0A1B0GUL6 1792 aa24.8■■□□□ 1.56
SHMT1-201ENST00000316694 KRT9P35527 623 aa24.79■■□□□ 1.56
SHMT1-201ENST00000316694 STAT6P42226 847 aa24.79■■□□□ 1.56
SHMT1-201ENST00000316694 UBXN1Q04323 297 aa24.79■■□□□ 1.56
SHMT1-201ENST00000316694 GPKOWQ92917 476 aaPredicted RBP eCLIP24.79■■□□□ 1.56
SHMT1-201ENST00000316694 SLF1Q9BQI6 1058 aa24.79■■□□□ 1.56
SHMT1-201ENST00000316694 DNAJC5Q9H3Z4 198 aa24.79■■□□□ 1.56
SHMT1-201ENST00000316694 RMND1Q9NWS8 449 aa24.79■■□□□ 1.56
SHMT1-201ENST00000316694 PRCPP42785 496 aa24.79■■□□□ 1.56
SHMT1-201ENST00000316694 NEK11Q8NG66 645 aa24.79■■□□□ 1.56
SHMT1-201ENST00000316694 CELF1Q92879 486 aaKnown RBP24.79■■□□□ 1.56
SHMT1-201ENST00000316694 THRAP3Q9Y2W1 955 aaKnown RBP24.79■■□□□ 1.56
SHMT1-201ENST00000316694 RASSF8Q8NHQ8 419 aa24.78■■□□□ 1.56
SHMT1-201ENST00000316694 RASGRP4Q8TDF6 673 aa24.78■■□□□ 1.56
SHMT1-201ENST00000316694 PNKPQ96T60 521 aa24.78■■□□□ 1.56
SHMT1-201ENST00000316694 NAPGQ99747 312 aaPredicted RBP24.78■■□□□ 1.56
SHMT1-201ENST00000316694 ZBTB9Q96C00 473 aa24.78■■□□□ 1.56
SHMT1-201ENST00000316694 CALCOCO1Q9P1Z2 691 aa24.78■■□□□ 1.56
SHMT1-201ENST00000316694 TRIM49BA6NDI0 452 aa24.77■■□□□ 1.56
SHMT1-201ENST00000316694 NUTM2BA6NNL0 878 aaPredicted RBP24.77■■□□□ 1.56
SHMT1-201ENST00000316694 NUTM2EB1AL46 878 aaPredicted RBP24.77■■□□□ 1.56
SHMT1-201ENST00000316694 PES1O00541 588 aaKnown RBP24.77■■□□□ 1.56
SHMT1-201ENST00000316694 RHOXF2BP0C7M4 288 aa24.77■■□□□ 1.56
SHMT1-201ENST00000316694 GTF2E1P29083 439 aaPredicted RBP24.77■■□□□ 1.56
SHMT1-201ENST00000316694 BLIDQ8IZY5 108 aa24.77■■□□□ 1.56
SHMT1-201ENST00000316694 RHOXF2Q9BQY4 288 aa24.77■■□□□ 1.56
SHMT1-201ENST00000316694 TFCP2L1Q9NZI6 479 aa24.77■■□□□ 1.56
SHMT1-201ENST00000316694 JAG2Q9Y219 1238 aa24.77■■□□□ 1.56
SHMT1-201ENST00000316694 RREB1Q92766 1687 aa24.77■■□□□ 1.56
SHMT1-201ENST00000316694 FAM205AQ6ZU69 1335 aa24.77■■□□□ 1.56
SHMT1-201ENST00000316694 COL22A1Q8NFW1 1626 aaPredicted RBP24.77■■□□□ 1.56
SHMT1-201ENST00000316694 LONP1P36776 959 aaKnown RBP24.77■■□□□ 1.56
SHMT1-201ENST00000316694 GYS2P54840 703 aa24.77■■□□□ 1.56
SHMT1-201ENST00000316694 TRIM14Q14142 442 aa24.77■■□□□ 1.56
SHMT1-201ENST00000316694 PRDX5P30044 214 aa24.76■■□□□ 1.55
SHMT1-201ENST00000316694 KIF5BP33176 963 aa24.76■■□□□ 1.55
SHMT1-201ENST00000316694 ARHGAP25P42331 645 aa24.76■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms