RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 PRPF6O94906 941 aaKnown RBP15.2■□□□□ 0.02
CSPG4-201ENST00000308508 TAF11Q15544 211 aa15.2■□□□□ 0.02
CSPG4-201ENST00000308508 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.2■□□□□ 0.02
CSPG4-201ENST00000308508 CD19P15391 556 aa15.2■□□□□ 0.02
CSPG4-201ENST00000308508 POLE2P56282 527 aa15.2■□□□□ 0.02
CSPG4-201ENST00000308508 BICC1Q9H694 974 aaKnown RBP15.2■□□□□ 0.02
CSPG4-201ENST00000308508 DENND2AQ9ULE3 1009 aa15.2■□□□□ 0.02
CSPG4-201ENST00000308508 PDZD4Q76G19 769 aaPredicted RBP15.2■□□□□ 0.02
CSPG4-201ENST00000308508 N4BP1O75113 896 aaKnown RBP15.19■□□□□ 0.02
CSPG4-201ENST00000308508 ADALQ6DHV7 355 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 GPCPD1Q9NPB8 672 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 NLRC4Q9NPP4 1024 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 V9GY48 417 aaPredicted RBP15.19■□□□□ 0.02
CSPG4-201ENST00000308508 CPA1P15085 419 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 GNGT2O14610 69 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 LMNB1P20700 586 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 RCN2Q14257 317 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 ARHGAP44Q17R89 818 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 AKAP4Q5JQC9 854 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 ST13P4Q8IZP2 240 aaPredicted RBP15.19■□□□□ 0.02
CSPG4-201ENST00000308508 DESI2Q9BSY9 194 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 IFT122Q9HBG6 1241 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 ARHGEF10LQ9HCE6 1279 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 JRKLQ9Y4A0 524 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 MAN1A2O60476 641 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 ABCB4P21439 1286 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 ADCY7P51828 1080 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 NONOQ15233 471 aaKnown RBP eCLIP15.19■□□□□ 0.02
CSPG4-201ENST00000308508 KMT5BQ4FZB7 885 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 HDAC11Q96DB2 347 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 TSC22D3Q99576 134 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 YY1AP1Q9H869 796 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 IBTKQ9P2D0 1353 aaPredicted RBP15.19■□□□□ 0.02
CSPG4-201ENST00000308508 INHBAP08476 426 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 EPHB4P54760 987 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 GUCY2DQ02846 1103 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 E2F5Q15329 346 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 TRMT44Q8IYL2 757 aaKnown RBP15.19■□□□□ 0.02
CSPG4-201ENST00000308508 CABP7Q86V35 215 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 TRIML1Q8N9V2 468 aa15.19■□□□□ 0.02
CSPG4-201ENST00000308508 CDC25BP30305 580 aa15.18■□□□□ 0.02
CSPG4-201ENST00000308508 KRT80Q6KB66 452 aa15.18■□□□□ 0.02
CSPG4-201ENST00000308508 ARHGEF18Q6ZSZ5 1173 aa15.18■□□□□ 0.02
CSPG4-201ENST00000308508 MIS12Q9H081 205 aa15.18■□□□□ 0.02
CSPG4-201ENST00000308508 NIP7Q9Y221 180 aaKnown RBP eCLIP15.18■□□□□ 0.02
CSPG4-201ENST00000308508 TTC19Q6DKK2 380 aaPredicted RBP15.18■□□□□ 0.02
CSPG4-201ENST00000308508 CSRNP1Q96S65 589 aa15.18■□□□□ 0.02
CSPG4-201ENST00000308508 NCOA5Q9HCD5 579 aaKnown RBP15.18■□□□□ 0.02
CSPG4-201ENST00000308508 CC2D2AQ9P2K1 1620 aa15.18■□□□□ 0.02
CSPG4-201ENST00000308508 ESYT2A0FGR8 921 aa15.18■□□□□ 0.02
CSPG4-201ENST00000308508 ATF7P17544 494 aaPredicted RBP15.18■□□□□ 0.02
CSPG4-201ENST00000308508 MAP3K7CLP57077 242 aa15.18■□□□□ 0.02
CSPG4-201ENST00000308508 DYMQ7RTS9 669 aa15.18■□□□□ 0.02
CSPG4-201ENST00000308508 EEF1GP26641 437 aaKnown RBP15.18■□□□□ 0.02
CSPG4-201ENST00000308508 RINT1Q6NUQ1 792 aa15.18■□□□□ 0.02
CSPG4-201ENST00000308508 DPH5Q9H2P9 285 aa15.18■□□□□ 0.02
CSPG4-201ENST00000308508 SLMAPQ14BN4 828 aa15.18■□□□□ 0.02
CSPG4-201ENST00000308508 KCTD16Q68DU8 428 aa15.18■□□□□ 0.02
CSPG4-201ENST00000308508 EEF1B2P24534 225 aaKnown RBP15.18■□□□□ 0.02
CSPG4-201ENST00000308508 IL1RL1Q01638 556 aa15.18■□□□□ 0.02
CSPG4-201ENST00000308508 ATICP31939 592 aa15.18■□□□□ 0.02
CSPG4-201ENST00000308508 ZC3H12CQ9C0D7 883 aaKnown RBP15.18■□□□□ 0.02
CSPG4-201ENST00000308508 ARHGEF11O15085 1522 aa15.18■□□□□ 0.02
CSPG4-201ENST00000308508 FOXO3O43524 673 aa15.17■□□□□ 0.02
CSPG4-201ENST00000308508 GPC4O75487 556 aa15.17■□□□□ 0.02
CSPG4-201ENST00000308508 ECE1P42892 770 aa15.17■□□□□ 0.02
CSPG4-201ENST00000308508 CEP19Q96LK0 163 aa15.17■□□□□ 0.02
CSPG4-201ENST00000308508 NOP56O00567 594 aaKnown RBP15.17■□□□□ 0.02
CSPG4-201ENST00000308508 STX1BP61266 288 aa15.17■□□□□ 0.02
CSPG4-201ENST00000308508 KLHL29Q96CT2 875 aa15.17■□□□□ 0.02
CSPG4-201ENST00000308508 BUB1O43683 1085 aa15.17■□□□□ 0.02
CSPG4-201ENST00000308508 PACSIN2Q9UNF0 486 aaPredicted RBP15.17■□□□□ 0.02
CSPG4-201ENST00000308508 CUL7Q14999 1698 aa15.17■□□□□ 0.02
CSPG4-201ENST00000308508 KRT19P08727 400 aa15.17■□□□□ 0.02
CSPG4-201ENST00000308508 TNNI1P19237 187 aa15.17■□□□□ 0.02
CSPG4-201ENST00000308508 PDE6CP51160 858 aa15.17■□□□□ 0.02
CSPG4-201ENST00000308508 RBM6P78332 1123 aaKnown RBP15.17■□□□□ 0.02
CSPG4-201ENST00000308508 PPP2R5AQ15172 486 aa15.17■□□□□ 0.02
CSPG4-201ENST00000308508 PIP4K2CQ8TBX8 421 aa15.17■□□□□ 0.02
CSPG4-201ENST00000308508 EXOC4Q96A65 974 aa15.17■□□□□ 0.02
CSPG4-201ENST00000308508 SEPT2Q15019 361 aa15.17■□□□□ 0.02
CSPG4-201ENST00000308508 TMEM63CQ9P1W3 806 aa15.17■□□□□ 0.02
CSPG4-201ENST00000308508 H7C1D1 291 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 LMNAP02545 664 aaKnown RBP15.16■□□□□ 0.02
CSPG4-201ENST00000308508 BZW2Q9Y6E2 419 aaKnown RBP15.16■□□□□ 0.02
CSPG4-201ENST00000308508 TRPA1O75762 1119 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 BIRC2Q13490 618 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 CWF19L2Q2TBE0 894 aaKnown RBP15.16■□□□□ 0.02
CSPG4-201ENST00000308508 TMTC4Q5T4D3 741 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.16■□□□□ 0.02
CSPG4-201ENST00000308508 ITSN2Q9NZM3 1697 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 PHLPP2Q6ZVD8 1323 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 GUCY2CP25092 1073 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 BRDTQ58F21 947 aaPredicted RBP15.16■□□□□ 0.02
CSPG4-201ENST00000308508 GRAMD4Q6IC98 578 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 POMGNT1Q8WZA1 660 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 SERPINI1Q99574 410 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 RAB44Q7Z6P3 723 aaPredicted RBP15.16■□□□□ 0.02
CSPG4-201ENST00000308508 ANKRD35Q8N283 1001 aa15.16■□□□□ 0.02
CSPG4-201ENST00000308508 CCHCR1Q8TD31 782 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms