RNA–Protein interactions for RNA: ENST00000596938.1

CCDC9-203, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-203ENST00000596938 SOCS4Q8WXH5 440 aa12.57□□□□□ -0.4
CCDC9-203ENST00000596938 NUDT12Q9BQG2 462 aa12.57□□□□□ -0.4
CCDC9-203ENST00000596938 PAGR1Q9BTK6 254 aa12.57□□□□□ -0.4
CCDC9-203ENST00000596938 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.57□□□□□ -0.4
CCDC9-203ENST00000596938 LNPKQ9C0E8 428 aa12.57□□□□□ -0.4
CCDC9-203ENST00000596938 RNF208Q9H0X6 261 aa12.57□□□□□ -0.4
CCDC9-203ENST00000596938 PORCNQ9H237 461 aa12.57□□□□□ -0.4
CCDC9-203ENST00000596938 VCPKMTQ9H867 229 aa12.57□□□□□ -0.4
CCDC9-203ENST00000596938 ROBO3Q96MS0 1386 aa12.56□□□□□ -0.4
CCDC9-203ENST00000596938 SPDYE16A6NNV3 312 aaPredicted RBP12.56□□□□□ -0.4
CCDC9-203ENST00000596938 INHAP05111 366 aa12.56□□□□□ -0.4
CCDC9-203ENST00000596938 MORN1Q5T089 497 aa12.56□□□□□ -0.4
CCDC9-203ENST00000596938 B4GALNT3Q6L9W6 998 aa12.56□□□□□ -0.4
CCDC9-203ENST00000596938 PLEKHH3Q7Z736 793 aa12.56□□□□□ -0.4
CCDC9-203ENST00000596938 ZNF444Q8N0Y2 327 aaPredicted RBP12.56□□□□□ -0.4
CCDC9-203ENST00000596938 USP6NLQ92738 828 aa12.56□□□□□ -0.4
CCDC9-203ENST00000596938 UNC93B1Q9H1C4 597 aa12.56□□□□□ -0.4
CCDC9-203ENST00000596938 OSBPL3Q9H4L5 887 aa12.56□□□□□ -0.4
CCDC9-203ENST00000596938 HELLSQ9NRZ9 838 aa12.56□□□□□ -0.4
CCDC9-203ENST00000596938 NYAP2Q9P242 653 aa12.56□□□□□ -0.4
CCDC9-203ENST00000596938 ATAD5Q96QE3 1844 aa12.55□□□□□ -0.4
CCDC9-203ENST00000596938 WDR46O15213 610 aaKnown RBP12.55□□□□□ -0.4
CCDC9-203ENST00000596938 SGPL1O95470 568 aa12.55□□□□□ -0.4
CCDC9-203ENST00000596938 HMGCRP04035 888 aa12.55□□□□□ -0.4
CCDC9-203ENST00000596938 SLC3A2P08195 630 aaKnown RBP12.55□□□□□ -0.4
CCDC9-203ENST00000596938 DSG3P32926 999 aa12.55□□□□□ -0.4
CCDC9-203ENST00000596938 PRPF38BQ5VTL8 546 aaKnown RBP12.55□□□□□ -0.4
CCDC9-203ENST00000596938 GPR142Q7Z601 462 aa12.55□□□□□ -0.4
CCDC9-203ENST00000596938 CLEC10AQ8IUN9 316 aa12.55□□□□□ -0.4
CCDC9-203ENST00000596938 TRMT44Q8IYL2 757 aaKnown RBP12.55□□□□□ -0.4
CCDC9-203ENST00000596938 MB21D1Q8N884 522 aa12.55□□□□□ -0.4
CCDC9-203ENST00000596938 TANGO6Q9C0B7 1094 aa12.55□□□□□ -0.4
CCDC9-203ENST00000596938 NAPBQ9H115 298 aa12.55□□□□□ -0.4
CCDC9-203ENST00000596938 BTBD7Q9P203 1132 aa12.55□□□□□ -0.4
CCDC9-203ENST00000596938 ZSWIM8A7E2V4 1837 aa12.55□□□□□ -0.4
CCDC9-203ENST00000596938 IGKV6D-41A0A0C4DH26 115 aa12.54□□□□□ -0.4
CCDC9-203ENST00000596938 CYP2B6P20813 491 aa12.54□□□□□ -0.4
CCDC9-203ENST00000596938 ATP2B2Q01814 1243 aa12.54□□□□□ -0.4
CCDC9-203ENST00000596938 PDE4BQ07343 736 aa12.54□□□□□ -0.4
CCDC9-203ENST00000596938 ALX1Q15699 326 aa12.54□□□□□ -0.4
CCDC9-203ENST00000596938 PLEKHM2Q8IWE5 1019 aa12.54□□□□□ -0.4
CCDC9-203ENST00000596938 SPICE1Q8N0Z3 855 aa12.54□□□□□ -0.4
CCDC9-203ENST00000596938 U2AF1L4Q8WU68 220 aaKnown RBP12.54□□□□□ -0.4
CCDC9-203ENST00000596938 MKL1Q969V6 931 aa12.54□□□□□ -0.4
CCDC9-203ENST00000596938 SHISA4Q96DD7 197 aa12.54□□□□□ -0.4
CCDC9-203ENST00000596938 GOPCQ9HD26 462 aa12.54□□□□□ -0.4
CCDC9-203ENST00000596938 PAK6Q9NQU5 681 aaPredicted RBP12.54□□□□□ -0.4
CCDC9-203ENST00000596938 ADAMTS5Q9UNA0 930 aa12.54□□□□□ -0.4
CCDC9-203ENST00000596938 SLC15A5A6NIM6 579 aa12.53□□□□□ -0.4
CCDC9-203ENST00000596938 FOXP2O15409 715 aa12.53□□□□□ -0.4
CCDC9-203ENST00000596938 STRNO43815 780 aa12.53□□□□□ -0.4
CCDC9-203ENST00000596938 FLOT1O75955 427 aa12.53□□□□□ -0.4
CCDC9-203ENST00000596938 PTPREP23469 700 aa12.53□□□□□ -0.4
CCDC9-203ENST00000596938 RGS2P41220 211 aa12.53□□□□□ -0.4
CCDC9-203ENST00000596938 PPARAQ07869 468 aa12.53□□□□□ -0.4
CCDC9-203ENST00000596938 MAP2K5Q13163 448 aa12.53□□□□□ -0.4
CCDC9-203ENST00000596938 MCMDC2Q4G0Z9 681 aa12.53□□□□□ -0.4
CCDC9-203ENST00000596938 UBE2Q1Q7Z7E8 422 aa12.53□□□□□ -0.4
CCDC9-203ENST00000596938 STK11IPQ8N1F8 1099 aa12.53□□□□□ -0.4
CCDC9-203ENST00000596938 SHCBP1Q8NEM2 672 aa12.53□□□□□ -0.4
CCDC9-203ENST00000596938 CRISPLD2Q9H0B8 497 aa12.53□□□□□ -0.4
CCDC9-203ENST00000596938 MTMR4Q9NYA4 1195 aa12.53□□□□□ -0.4
CCDC9-203ENST00000596938 ANAPC4Q9UJX5 808 aa12.53□□□□□ -0.4
CCDC9-203ENST00000596938 SYNPO2Q9UMS6 1093 aa12.53□□□□□ -0.4
CCDC9-203ENST00000596938 RPTORQ8N122 1335 aa12.53□□□□□ -0.4
CCDC9-203ENST00000596938 NAV1Q8NEY1 1877 aa12.53□□□□□ -0.4
CCDC9-203ENST00000596938 KIAA0100Q14667 2235 aaKnown RBP12.52□□□□□ -0.41
CCDC9-203ENST00000596938 TRIM6-TRIM34B2RNG4 842 aa12.52□□□□□ -0.41
CCDC9-203ENST00000596938 F5H6K3 240 aa12.52□□□□□ -0.41
CCDC9-203ENST00000596938 PRDM1O75626 825 aa12.52□□□□□ -0.41
CCDC9-203ENST00000596938 TFRCP02786 760 aaKnown RBP12.52□□□□□ -0.41
CCDC9-203ENST00000596938 HOXC6P09630 235 aa12.52□□□□□ -0.41
CCDC9-203ENST00000596938 KLRC3Q07444 240 aa12.52□□□□□ -0.41
CCDC9-203ENST00000596938 MAP3K21Q5TCX8 1036 aa12.52□□□□□ -0.41
CCDC9-203ENST00000596938 CCDC129Q6ZRS4 1044 aa12.52□□□□□ -0.41
CCDC9-203ENST00000596938 NEDD1Q8NHV4 660 aa12.52□□□□□ -0.41
CCDC9-203ENST00000596938 TRIB2Q92519 343 aa12.52□□□□□ -0.41
CCDC9-203ENST00000596938 FAM227BQ96M60 508 aa12.52□□□□□ -0.41
CCDC9-203ENST00000596938 DEFB118Q96PH6 123 aa12.52□□□□□ -0.41
CCDC9-203ENST00000596938 MOV10L1Q9BXT6 1211 aaKnown RBP12.52□□□□□ -0.41
CCDC9-203ENST00000596938 SPATC1LQ9H0A9 340 aa12.52□□□□□ -0.41
CCDC9-203ENST00000596938 CWC22Q9HCG8 908 aaKnown RBP12.52□□□□□ -0.41
CCDC9-203ENST00000596938 HMX1Q9NP08 348 aaPredicted RBP12.52□□□□□ -0.41
CCDC9-203ENST00000596938 CLIP2Q9UDT6 1046 aa12.52□□□□□ -0.41
CCDC9-203ENST00000596938 IVNS1ABPQ9Y6Y0 642 aa12.52□□□□□ -0.41
CCDC9-203ENST00000596938 FGRP09769 529 aa12.51□□□□□ -0.41
CCDC9-203ENST00000596938 TRIM32Q13049 653 aa12.51□□□□□ -0.41
CCDC9-203ENST00000596938 GRB14Q14449 540 aa12.51□□□□□ -0.41
CCDC9-203ENST00000596938 PPP4R3BQ5MIZ7 849 aa12.51□□□□□ -0.41
CCDC9-203ENST00000596938 VPS53Q5VIR6 699 aa12.51□□□□□ -0.41
CCDC9-203ENST00000596938 RILPL2Q969X0 211 aa12.51□□□□□ -0.41
CCDC9-203ENST00000596938 ATG4CQ96DT6 458 aa12.51□□□□□ -0.41
CCDC9-203ENST00000596938 APBA2Q99767 749 aa12.51□□□□□ -0.41
CCDC9-203ENST00000596938 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.51□□□□□ -0.41
CCDC9-203ENST00000596938 MROH8Q9H579 483 aa12.51□□□□□ -0.41
CCDC9-203ENST00000596938 A0A0D9SFI3 127 aa12.5□□□□□ -0.41
CCDC9-203ENST00000596938 VWA5AO00534 786 aa12.5□□□□□ -0.41
CCDC9-203ENST00000596938 SLC25A27O95847 323 aa12.5□□□□□ -0.41
CCDC9-203ENST00000596938 TTLL1O95922 423 aa12.5□□□□□ -0.41
CCDC9-203ENST00000596938 FGAP02671 866 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms