RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 STK11IPQ8N1F8 1099 aa19.3■□□□□ 0.68
TRIM28-206ENST00000595974 GPRC5AQ8NFJ5 357 aa19.3■□□□□ 0.68
TRIM28-206ENST00000595974 COA7Q96BR5 231 aa19.3■□□□□ 0.68
TRIM28-206ENST00000595974 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.3■□□□□ 0.68
TRIM28-206ENST00000595974 VCPKMTQ9H867 229 aa19.3■□□□□ 0.68
TRIM28-206ENST00000595974 BRCA2P51587 3418 aa19.29■□□□□ 0.68
TRIM28-206ENST00000595974 EEF2P13639 858 aaKnown RBP19.29■□□□□ 0.68
TRIM28-206ENST00000595974 ERVK-9P63128 1117 aa19.29■□□□□ 0.68
TRIM28-206ENST00000595974 ERVK-24P63145 666 aa19.29■□□□□ 0.68
TRIM28-206ENST00000595974 VPS53Q5VIR6 699 aa19.29■□□□□ 0.68
TRIM28-206ENST00000595974 ZNF589Q86UQ0 364 aaPredicted RBP19.29■□□□□ 0.68
TRIM28-206ENST00000595974 ZNF444Q8N0Y2 327 aaPredicted RBP19.29■□□□□ 0.68
TRIM28-206ENST00000595974 TXNRD2Q9NNW7 524 aa19.29■□□□□ 0.68
TRIM28-206ENST00000595974 DIAPH3Q9NSV4 1193 aa19.29■□□□□ 0.68
TRIM28-206ENST00000595974 PRDM1O75626 825 aa19.28■□□□□ 0.68
TRIM28-206ENST00000595974 ATP2B2Q01814 1243 aa19.28■□□□□ 0.68
TRIM28-206ENST00000595974 IRF5Q13568 498 aa19.28■□□□□ 0.68
TRIM28-206ENST00000595974 TTC22Q5TAA0 569 aa19.28■□□□□ 0.68
TRIM28-206ENST00000595974 PAGR1Q9BTK6 254 aa19.28■□□□□ 0.68
TRIM28-206ENST00000595974 TANGO6Q9C0B7 1094 aa19.28■□□□□ 0.68
TRIM28-206ENST00000595974 GOPCQ9HD26 462 aa19.28■□□□□ 0.68
TRIM28-206ENST00000595974 RBPJLQ9UBG7 517 aa19.28■□□□□ 0.68
TRIM28-206ENST00000595974 ANAPC4Q9UJX5 808 aa19.28■□□□□ 0.68
TRIM28-206ENST00000595974 GABRQQ9UN88 632 aa19.28■□□□□ 0.68
TRIM28-206ENST00000595974 RABGAP1Q9Y3P9 1069 aa19.28■□□□□ 0.68
TRIM28-206ENST00000595974 COL11A1P12107 1806 aaPredicted RBP19.28■□□□□ 0.68
TRIM28-206ENST00000595974 IGKV6D-41A0A0C4DH26 115 aa19.27■□□□□ 0.68
TRIM28-206ENST00000595974 SPDYE16A6NNV3 312 aaPredicted RBP19.27■□□□□ 0.68
TRIM28-206ENST00000595974 WDR46O15213 610 aaKnown RBP19.27■□□□□ 0.68
TRIM28-206ENST00000595974 HSPD1P10809 573 aaKnown RBP19.27■□□□□ 0.68
TRIM28-206ENST00000595974 GRK4P32298 578 aa19.27■□□□□ 0.68
TRIM28-206ENST00000595974 FLT3LGP49771 235 aa19.27■□□□□ 0.68
TRIM28-206ENST00000595974 KIAA1755Q5JYT7 1200 aa19.27■□□□□ 0.68
TRIM28-206ENST00000595974 SLAIN1Q8ND83 568 aa19.27■□□□□ 0.68
TRIM28-206ENST00000595974 SH3TC2Q8TF17 1288 aa19.27■□□□□ 0.68
TRIM28-206ENST00000595974 NYAP2Q9P242 653 aa19.27■□□□□ 0.68
TRIM28-206ENST00000595974 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.27■□□□□ 0.68
TRIM28-206ENST00000595974 MAPK4P31152 587 aa19.26■□□□□ 0.67
TRIM28-206ENST00000595974 POTEEQ6S8J3 1075 aa19.26■□□□□ 0.67
TRIM28-206ENST00000595974 SPICE1Q8N0Z3 855 aa19.26■□□□□ 0.67
TRIM28-206ENST00000595974 SYNPO2Q9UMS6 1093 aa19.26■□□□□ 0.67
TRIM28-206ENST00000595974 CNMDO75829 334 aa19.25■□□□□ 0.67
TRIM28-206ENST00000595974 FGAP02671 866 aa19.25■□□□□ 0.67
TRIM28-206ENST00000595974 TSPY3P0CV98 308 aa19.25■□□□□ 0.67
TRIM28-206ENST00000595974 TSPY8P0CW00 308 aa19.25■□□□□ 0.67
TRIM28-206ENST00000595974 GSPT1P15170 499 aaKnown RBP19.25■□□□□ 0.67
TRIM28-206ENST00000595974 CCNA1P78396 465 aa19.25■□□□□ 0.67
TRIM28-206ENST00000595974 MLLT1Q03111 559 aaPredicted RBP19.25■□□□□ 0.67
TRIM28-206ENST00000595974 COG2Q14746 738 aa19.25■□□□□ 0.67
TRIM28-206ENST00000595974 NEDD1Q8NHV4 660 aa19.25■□□□□ 0.67
TRIM28-206ENST00000595974 PXYLP1Q8TE99 480 aa19.25■□□□□ 0.67
TRIM28-206ENST00000595974 HOXC10Q9NYD6 342 aa19.25■□□□□ 0.67
TRIM28-206ENST00000595974 PDE4DIPQ5VU43 2346 aa19.25■□□□□ 0.67
TRIM28-206ENST00000595974 ADCY3O60266 1144 aa19.24■□□□□ 0.67
TRIM28-206ENST00000595974 PEX10O60683 326 aa19.24■□□□□ 0.67
TRIM28-206ENST00000595974 FLOT1O75955 427 aa19.24■□□□□ 0.67
TRIM28-206ENST00000595974 CTDSPL2Q05D32 466 aa19.24■□□□□ 0.67
TRIM28-206ENST00000595974 PPP4R3BQ5MIZ7 849 aa19.24■□□□□ 0.67
TRIM28-206ENST00000595974 CWC27Q6UX04 472 aaKnown RBP19.24■□□□□ 0.67
TRIM28-206ENST00000595974 CCAR1Q8IX12 1150 aaKnown RBP19.24■□□□□ 0.67
TRIM28-206ENST00000595974 MB21D1Q8N884 522 aa19.24■□□□□ 0.67
TRIM28-206ENST00000595974 SOCS4Q8WXH5 440 aa19.24■□□□□ 0.67
TRIM28-206ENST00000595974 CEP95Q96GE4 821 aa19.24■□□□□ 0.67
TRIM28-206ENST00000595974 TMEM106CQ9BVX2 250 aa19.24■□□□□ 0.67
TRIM28-206ENST00000595974 MTMR4Q9NYA4 1195 aa19.24■□□□□ 0.67
TRIM28-206ENST00000595974 ZNF236Q9UL36 1845 aa19.23■□□□□ 0.67
TRIM28-206ENST00000595974 ORC4O43929 436 aa19.23■□□□□ 0.67
TRIM28-206ENST00000595974 TTLL1O95922 423 aa19.23■□□□□ 0.67
TRIM28-206ENST00000595974 DSG3P32926 999 aa19.23■□□□□ 0.67
TRIM28-206ENST00000595974 UBXN2AP68543 259 aa19.23■□□□□ 0.67
TRIM28-206ENST00000595974 Q3C1V9 767 aa19.23■□□□□ 0.67
TRIM28-206ENST00000595974 PORCNQ9H237 461 aa19.23■□□□□ 0.67
TRIM28-206ENST00000595974 BTBD7Q9P203 1132 aa19.23■□□□□ 0.67
TRIM28-206ENST00000595974 POTEFA5A3E0 1075 aa19.22■□□□□ 0.67
TRIM28-206ENST00000595974 TSPY2A6NKD2 308 aa19.22■□□□□ 0.67
TRIM28-206ENST00000595974 FGRP09769 529 aa19.22■□□□□ 0.67
TRIM28-206ENST00000595974 TFAP4Q01664 338 aa19.22■□□□□ 0.67
TRIM28-206ENST00000595974 FAM47AQ5JRC9 791 aa19.22■□□□□ 0.67
TRIM28-206ENST00000595974 GPR142Q7Z601 462 aa19.22■□□□□ 0.67
TRIM28-206ENST00000595974 MKL1Q969V6 931 aa19.22■□□□□ 0.67
TRIM28-206ENST00000595974 BIN2Q9UBW5 565 aaPredicted RBP19.22■□□□□ 0.67
TRIM28-206ENST00000595974 CLIP2Q9UDT6 1046 aa19.22■□□□□ 0.67
TRIM28-206ENST00000595974 GJD2Q9UKL4 321 aa19.22■□□□□ 0.67
TRIM28-206ENST00000595974 RAD50Q92878 1312 aa19.22■□□□□ 0.67
TRIM28-206ENST00000595974 RAD21O60216 631 aa19.21■□□□□ 0.67
TRIM28-206ENST00000595974 PCP11498 1178 aaKnown RBP19.21■□□□□ 0.67
TRIM28-206ENST00000595974 CENPQQ7L2Z9 268 aaPredicted RBP19.21■□□□□ 0.67
TRIM28-206ENST00000595974 PLEKHH3Q7Z736 793 aa19.21■□□□□ 0.67
TRIM28-206ENST00000595974 ATG4CQ96DT6 458 aa19.21■□□□□ 0.67
TRIM28-206ENST00000595974 NUDT12Q9BQG2 462 aa19.21■□□□□ 0.67
TRIM28-206ENST00000595974 CWC22Q9HCG8 908 aaKnown RBP19.21■□□□□ 0.67
TRIM28-206ENST00000595974 F5H6K3 240 aa19.2■□□□□ 0.66
TRIM28-206ENST00000595974 NDUFB10O96000 172 aa19.2■□□□□ 0.66
TRIM28-206ENST00000595974 ELNP15502 786 aa19.2■□□□□ 0.66
TRIM28-206ENST00000595974 KLRC3Q07444 240 aa19.2■□□□□ 0.66
TRIM28-206ENST00000595974 FAM83BQ5T0W9 1011 aa19.2■□□□□ 0.66
TRIM28-206ENST00000595974 GMCL1P1Q8NEA9 526 aa19.2■□□□□ 0.66
TRIM28-206ENST00000595974 DSCC1Q9BVC3 393 aa19.2■□□□□ 0.66
TRIM28-206ENST00000595974 MKI67P46013 3256 aaKnown RBP19.2■□□□□ 0.66
TRIM28-206ENST00000595974 TNRC18O15417 2968 aaPredicted RBP19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms