RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 TICAM2Q86XR7 235 aa24.35■■□□□ 1.49
SS18-224ENST00000584083 SPICE1Q8N0Z3 855 aa24.35■■□□□ 1.49
SS18-224ENST00000584083 LPAR1Q92633 364 aa24.35■■□□□ 1.49
SS18-224ENST00000584083 FAM227BQ96M60 508 aa24.35■■□□□ 1.49
SS18-224ENST00000584083 OSBPL3Q9H4L5 887 aa24.35■■□□□ 1.49
SS18-224ENST00000584083 RABGAP1Q9Y3P9 1069 aa24.35■■□□□ 1.49
SS18-224ENST00000584083 PRDM1O75626 825 aa24.34■■□□□ 1.49
SS18-224ENST00000584083 ELNP15502 786 aa24.34■■□□□ 1.49
SS18-224ENST00000584083 EN2P19622 333 aaPredicted RBP24.34■■□□□ 1.49
SS18-224ENST00000584083 UBXN2AP68543 259 aa24.34■■□□□ 1.49
SS18-224ENST00000584083 Q3C1V9 767 aa24.34■■□□□ 1.49
SS18-224ENST00000584083 KIAA1755Q5JYT7 1200 aa24.34■■□□□ 1.49
SS18-224ENST00000584083 POTEEQ6S8J3 1075 aa24.34■■□□□ 1.49
SS18-224ENST00000584083 VCPKMTQ9H867 229 aa24.34■■□□□ 1.49
SS18-224ENST00000584083 CWC22Q9HCG8 908 aaKnown RBP24.34■■□□□ 1.49
SS18-224ENST00000584083 RAD21O60216 631 aa24.33■■□□□ 1.49
SS18-224ENST00000584083 MAPK4P31152 587 aa24.33■■□□□ 1.49
SS18-224ENST00000584083 PDE4BQ07343 736 aa24.33■■□□□ 1.49
SS18-224ENST00000584083 PPARAQ07869 468 aa24.33■■□□□ 1.49
SS18-224ENST00000584083 COG2Q14746 738 aa24.33■■□□□ 1.49
SS18-224ENST00000584083 MTFR1Q15390 333 aa24.33■■□□□ 1.49
SS18-224ENST00000584083 MCMDC2Q4G0Z9 681 aa24.33■■□□□ 1.49
SS18-224ENST00000584083 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.33■■□□□ 1.49
SS18-224ENST00000584083 GREB1LQ9C091 1923 aaPredicted RBP24.33■■□□□ 1.49
SS18-224ENST00000584083 A0A0D9SFI3 127 aa24.32■■□□□ 1.48
SS18-224ENST00000584083 SPDYE16A6NNV3 312 aaPredicted RBP24.32■■□□□ 1.48
SS18-224ENST00000584083 CCNA1P78396 465 aa24.32■■□□□ 1.48
SS18-224ENST00000584083 NMIQ13287 307 aaPredicted RBP24.32■■□□□ 1.48
SS18-224ENST00000584083 PXYLP1Q8TE99 480 aa24.32■■□□□ 1.48
SS18-224ENST00000584083 PORCNQ9H237 461 aa24.32■■□□□ 1.48
SS18-224ENST00000584083 GOPCQ9HD26 462 aa24.32■■□□□ 1.48
SS18-224ENST00000584083 HOXC10Q9NYD6 342 aa24.32■■□□□ 1.48
SS18-224ENST00000584083 GJD2Q9UKL4 321 aa24.32■■□□□ 1.48
SS18-224ENST00000584083 MYH4Q9Y623 1939 aa24.31■■□□□ 1.48
SS18-224ENST00000584083 FOXP2O15409 715 aa24.31■■□□□ 1.48
SS18-224ENST00000584083 CNMDO75829 334 aa24.31■■□□□ 1.48
SS18-224ENST00000584083 VPS53Q5VIR6 699 aa24.31■■□□□ 1.48
SS18-224ENST00000584083 LBX2Q6XYB7 198 aa24.31■■□□□ 1.48
SS18-224ENST00000584083 PLXNB2O15031 1838 aa24.31■■□□□ 1.48
SS18-224ENST00000584083 WDR46O15213 610 aaKnown RBP24.3■■□□□ 1.48
SS18-224ENST00000584083 TNRC18O15417 2968 aaPredicted RBP24.3■■□□□ 1.48
SS18-224ENST00000584083 CCL5P13501 91 aa24.3■■□□□ 1.48
SS18-224ENST00000584083 WDR78Q5VTH9 848 aa24.3■■□□□ 1.48
SS18-224ENST00000584083 SAMD1Q6SPF0 538 aaPredicted RBP24.3■■□□□ 1.48
SS18-224ENST00000584083 NUDT12Q9BQG2 462 aa24.3■■□□□ 1.48
SS18-224ENST00000584083 BTBD7Q9P203 1132 aa24.3■■□□□ 1.48
SS18-224ENST00000584083 RLFQ13129 1914 aa24.29■■□□□ 1.48
SS18-224ENST00000584083 FLOT1O75955 427 aa24.29■■□□□ 1.48
SS18-224ENST00000584083 INHAP05111 366 aa24.29■■□□□ 1.48
SS18-224ENST00000584083 SDSP20132 328 aa24.29■■□□□ 1.48
SS18-224ENST00000584083 PLEKHH3Q7Z736 793 aa24.29■■□□□ 1.48
SS18-224ENST00000584083 SOCS4Q8WXH5 440 aa24.29■■□□□ 1.48
SS18-224ENST00000584083 RNF208Q9H0X6 261 aa24.29■■□□□ 1.48
SS18-224ENST00000584083 NYAP2Q9P242 653 aa24.29■■□□□ 1.48
SS18-224ENST00000584083 TSPY3P0CV98 308 aa24.28■■□□□ 1.48
SS18-224ENST00000584083 TSPY8P0CW00 308 aa24.28■■□□□ 1.48
SS18-224ENST00000584083 CYP2B6P20813 491 aa24.28■■□□□ 1.48
SS18-224ENST00000584083 CTDSPL2Q05D32 466 aa24.28■■□□□ 1.48
SS18-224ENST00000584083 GPR142Q7Z601 462 aa24.28■■□□□ 1.48
SS18-224ENST00000584083 CLIP2Q9UDT6 1046 aa24.28■■□□□ 1.48
SS18-224ENST00000584083 PDE4DIPQ5VU43 2346 aa24.27■■□□□ 1.48
SS18-224ENST00000584083 PARP14Q460N5 1801 aa24.27■■□□□ 1.48
SS18-224ENST00000584083 DSG3P32926 999 aa24.27■■□□□ 1.48
SS18-224ENST00000584083 TFAP4Q01664 338 aa24.27■■□□□ 1.48
SS18-224ENST00000584083 ALX1Q15699 326 aa24.27■■□□□ 1.48
SS18-224ENST00000584083 FAM47AQ5JRC9 791 aa24.27■■□□□ 1.48
SS18-224ENST00000584083 UNC93B1Q9H1C4 597 aa24.27■■□□□ 1.48
SS18-224ENST00000584083 DIAPH3Q9NSV4 1193 aa24.27■■□□□ 1.48
SS18-224ENST00000584083 CCDC171Q6TFL3 1326 aa24.27■■□□□ 1.48
SS18-224ENST00000584083 IGKV6D-41A0A0C4DH26 115 aa24.26■■□□□ 1.47
SS18-224ENST00000584083 PDE4AP27815 886 aa24.26■■□□□ 1.47
SS18-224ENST00000584083 MFAP1P55081 439 aaKnown RBP24.26■■□□□ 1.47
SS18-224ENST00000584083 ZNF589Q86UQ0 364 aaPredicted RBP24.26■■□□□ 1.47
SS18-224ENST00000584083 NEDD1Q8NHV4 660 aa24.26■■□□□ 1.47
SS18-224ENST00000584083 CEP95Q96GE4 821 aa24.26■■□□□ 1.47
SS18-224ENST00000584083 FGAP02671 866 aa24.25■■□□□ 1.47
SS18-224ENST00000584083 GJB1P08034 283 aa24.25■■□□□ 1.47
SS18-224ENST00000584083 HSPD1P10809 573 aaKnown RBP24.25■■□□□ 1.47
SS18-224ENST00000584083 PLS1Q14651 629 aa24.25■■□□□ 1.47
SS18-224ENST00000584083 FAM83BQ5T0W9 1011 aa24.25■■□□□ 1.47
SS18-224ENST00000584083 MB21D1Q8N884 522 aa24.25■■□□□ 1.47
SS18-224ENST00000584083 NKX2-3Q8TAU0 364 aa24.25■■□□□ 1.47
SS18-224ENST00000584083 ATG4CQ96DT6 458 aa24.25■■□□□ 1.47
SS18-224ENST00000584083 INCENPQ9NQS7 918 aa24.25■■□□□ 1.47
SS18-224ENST00000584083 MTMR4Q9NYA4 1195 aa24.25■■□□□ 1.47
SS18-224ENST00000584083 IVNS1ABPQ9Y6Y0 642 aa24.25■■□□□ 1.47
SS18-224ENST00000584083 F5H6K3 240 aa24.24■■□□□ 1.47
SS18-224ENST00000584083 HIP1O00291 1037 aa24.24■■□□□ 1.47
SS18-224ENST00000584083 TTLL1O95922 423 aa24.24■■□□□ 1.47
SS18-224ENST00000584083 HMGCRP04035 888 aa24.24■■□□□ 1.47
SS18-224ENST00000584083 RGS2P41220 211 aa24.24■■□□□ 1.47
SS18-224ENST00000584083 KLRC3Q07444 240 aa24.24■■□□□ 1.47
SS18-224ENST00000584083 MORN1Q5T089 497 aa24.24■■□□□ 1.47
SS18-224ENST00000584083 CWC27Q6UX04 472 aaKnown RBP24.24■■□□□ 1.47
SS18-224ENST00000584083 NUP88Q99567 741 aaPredicted RBP24.24■■□□□ 1.47
SS18-224ENST00000584083 FBXO28Q9NVF7 368 aa24.24■■□□□ 1.47
SS18-224ENST00000584083 ANAPC4Q9UJX5 808 aa24.24■■□□□ 1.47
SS18-224ENST00000584083 A0A0G2JMZ2 1700 aa24.24■■□□□ 1.47
SS18-224ENST00000584083 COL11A1P12107 1806 aaPredicted RBP24.24■■□□□ 1.47
SS18-224ENST00000584083 TSPY2A6NKD2 308 aa24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms