RNA–Protein interactions for RNA: ENST00000577539.1

VAPA-203, Transcript of VAMP associated protein A, humanhuman

Gene VAPA, Length 3,760 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-203ENST00000577539 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.2□□□□□ -1.42
VAPA-203ENST00000577539 PUS7LQ9H0K6 701 aaKnown RBP6.2□□□□□ -1.42
VAPA-203ENST00000577539 KCNF1Q9H3M0 494 aa6.2□□□□□ -1.42
VAPA-203ENST00000577539 ANKRD18BA2A2Z9 1011 aa6.2□□□□□ -1.42
VAPA-203ENST00000577539 ITGA6P23229 1130 aa6.2□□□□□ -1.42
VAPA-203ENST00000577539 HIRAP54198 1017 aaPredicted RBP6.2□□□□□ -1.42
VAPA-203ENST00000577539 EXOSC10Q01780 885 aaKnown RBP6.2□□□□□ -1.42
VAPA-203ENST00000577539 STX1AQ16623 288 aa6.2□□□□□ -1.42
VAPA-203ENST00000577539 TPD52L1Q16890 204 aaPredicted RBP6.2□□□□□ -1.42
VAPA-203ENST00000577539 RRP12Q5JTH9 1297 aaKnown RBP6.2□□□□□ -1.42
VAPA-203ENST00000577539 C9orf131Q5VYM1 1079 aa6.2□□□□□ -1.42
VAPA-203ENST00000577539 ISM2Q6H9L7 571 aa6.2□□□□□ -1.42
VAPA-203ENST00000577539 C11orf57Q6ZUT1 292 aaPredicted RBP6.2□□□□□ -1.42
VAPA-203ENST00000577539 NCOA7Q8NI08 942 aa6.2□□□□□ -1.42
VAPA-203ENST00000577539 KIAA1524Q8TCG1 905 aa6.2□□□□□ -1.42
VAPA-203ENST00000577539 APPBP2Q92624 585 aa6.2□□□□□ -1.42
VAPA-203ENST00000577539 SCHIP1Q9P0W5 487 aaPredicted RBP6.2□□□□□ -1.42
VAPA-203ENST00000577539 PCDHB11Q9Y5F2 797 aa6.2□□□□□ -1.42
VAPA-203ENST00000577539 MAGEB6P1A0A0J9YX57 407 aa6.2□□□□□ -1.42
VAPA-203ENST00000577539 S1PR4O95977 384 aa6.2□□□□□ -1.42
VAPA-203ENST00000577539 ZFYP08048 801 aaPredicted RBP6.2□□□□□ -1.42
VAPA-203ENST00000577539 MICU3Q86XE3 530 aa6.2□□□□□ -1.42
VAPA-203ENST00000577539 DZIP3Q86Y13 1208 aaKnown RBP6.2□□□□□ -1.42
VAPA-203ENST00000577539 ETFBKMTQ8IXQ9 262 aa6.2□□□□□ -1.42
VAPA-203ENST00000577539 CEP57L1Q8IYX8 460 aa6.2□□□□□ -1.42
VAPA-203ENST00000577539 MYRIPQ8NFW9 859 aa6.2□□□□□ -1.42
VAPA-203ENST00000577539 MAP7D2Q96T17 732 aa6.2□□□□□ -1.42
VAPA-203ENST00000577539 GREM2Q9H772 168 aa6.2□□□□□ -1.42
VAPA-203ENST00000577539 RCOR1Q9UKL0 485 aa6.2□□□□□ -1.42
VAPA-203ENST00000577539 CTAGE5O15320 804 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 CIAO1O76071 339 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 MARCKSP29966 332 aaPredicted RBP6.19□□□□□ -1.42
VAPA-203ENST00000577539 HLFQ16534 295 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 CPLX2Q6PUV4 134 aaKnown RBP6.19□□□□□ -1.42
VAPA-203ENST00000577539 AOPEPQ8N6M6 819 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 ANKK1Q8NFD2 765 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 ZNF274Q96GC6 653 aaPredicted RBP6.19□□□□□ -1.42
VAPA-203ENST00000577539 ISCA1Q9BUE6 129 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 GOLPH3LQ9H4A5 285 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 ANO10Q9NW15 660 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 RGPD5Q99666 1765 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 RFX7Q2KHR2 1363 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 PALLDQ8WX93 1383 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 IRS4O14654 1257 aaPredicted RBP6.19□□□□□ -1.42
VAPA-203ENST00000577539 FAM160A1Q05DH4 1040 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 EHHADHQ08426 723 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 USP4Q13107 963 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 BPHLQ86WA6 291 aaPredicted RBP6.19□□□□□ -1.42
VAPA-203ENST00000577539 ATCAYQ86WG3 371 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 PIGBQ92521 554 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 MRPS27Q92552 414 aaKnown RBP6.19□□□□□ -1.42
VAPA-203ENST00000577539 CARD10Q9BWT7 1032 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 TMPRSS4Q9NRS4 437 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 CARMIL3Q8ND23 1372 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 USP54Q70EL1 1684 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 SNAP23O00161 211 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 SMC2O95347 1197 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 PCCAP05165 728 aaPredicted RBP6.19□□□□□ -1.42
VAPA-203ENST00000577539 EIF1AXP47813 144 aaKnown RBP6.19□□□□□ -1.42
VAPA-203ENST00000577539 TDRD7Q8NHU6 1098 aaKnown RBP6.19□□□□□ -1.42
VAPA-203ENST00000577539 AIDAQ96BJ3 306 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 KCTD15Q96SI1 283 aaPredicted RBP6.19□□□□□ -1.42
VAPA-203ENST00000577539 PCDHA7Q9UN72 937 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 FCF1Q9Y324 198 aaKnown RBP6.19□□□□□ -1.42
VAPA-203ENST00000577539 CLIC4Q9Y696 253 aa6.19□□□□□ -1.42
VAPA-203ENST00000577539 B4E1Z4 1266 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 TNNT1P13805 278 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 ATP2B1P20020 1258 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 RACK1P63244 317 aaKnown RBP6.18□□□□□ -1.42
VAPA-203ENST00000577539 ZSCAN25Q6NSZ9 544 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 ZBTB38Q8NAP3 1195 aaPredicted RBP6.18□□□□□ -1.42
VAPA-203ENST00000577539 MICAL1Q8TDZ2 1067 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 PKNOX2Q96KN3 472 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 AIFM3Q96NN9 605 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 MYL10Q9BUA6 226 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 TEX13AQ9BXU3 409 aaPredicted RBP6.18□□□□□ -1.42
VAPA-203ENST00000577539 NAT10Q9H0A0 1025 aaKnown RBP6.18□□□□□ -1.42
VAPA-203ENST00000577539 TRMT1Q9NXH9 659 aaKnown RBP6.18□□□□□ -1.42
VAPA-203ENST00000577539 BTG4Q9NY30 223 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 PARP2Q9UGN5 583 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 DENND2AQ9ULE3 1009 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 N4BP2Q86UW6 1770 aaPredicted RBP6.18□□□□□ -1.42
VAPA-203ENST00000577539 JCADQ9P266 1359 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 SPTLC2O15270 562 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 IL2RAP01589 272 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 FDPSP14324 419 aaKnown RBP6.18□□□□□ -1.42
VAPA-203ENST00000577539 MCAMP43121 646 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 PHKA1P46020 1223 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 METAP2P50579 478 aaKnown RBP eCLIP6.18□□□□□ -1.42
VAPA-203ENST00000577539 TRIM29Q14134 588 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 ARID5BQ14865 1188 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 TSNAXIP1Q2TAA8 658 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 TEX2Q8IWB9 1127 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 CACTINQ8WUQ7 758 aaKnown RBP6.18□□□□□ -1.42
VAPA-203ENST00000577539 PHKBQ93100 1093 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 ALG1Q9BT22 464 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 ATG3Q9NT62 314 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 NR3C2P08235 984 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 GDF10P55107 478 aa6.18□□□□□ -1.42
VAPA-203ENST00000577539 MYO19Q96H55 970 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms