RNA–Protein interactions for RNA: ENST00000576932.5

TOM1L1-223, Transcript of target of myb1 like 1 membrane trafficking protein, human

TSL 1 (best)

Gene TOM1L1, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1L1-223	ENST00000576932	SPP2	Q13103	211 aa		11.51	□□□□□ -0.57
TOM1L1-223	ENST00000576932	ANKRD44	Q8N8A2	993 aa		11.51	□□□□□ -0.57
TOM1L1-223	ENST00000576932	USP6NL	Q92738	828 aa		11.51	□□□□□ -0.57
TOM1L1-223	ENST00000576932	PRKRIP1	Q9H875	184 aa	Predicted RBP	11.51	□□□□□ -0.57
TOM1L1-223	ENST00000576932	GNL3L	Q9NVN8	582 aa	Known RBP	11.51	□□□□□ -0.57
TOM1L1-223	ENST00000576932	HCST	Q9UBK5	93 aa		11.51	□□□□□ -0.57
TOM1L1-223	ENST00000576932	PRKAG2	Q9UGJ0	569 aa		11.51	□□□□□ -0.57
TOM1L1-223	ENST00000576932	TNFRSF10A	O00220	468 aa		11.5	□□□□□ -0.57
TOM1L1-223	ENST00000576932	MSC	O60682	206 aa		11.5	□□□□□ -0.57
TOM1L1-223	ENST00000576932	HOXA7	P31268	230 aa	Predicted RBP	11.5	□□□□□ -0.57
TOM1L1-223	ENST00000576932	RGS2	P41220	211 aa		11.5	□□□□□ -0.57
TOM1L1-223	ENST00000576932	PTPN5	P54829	565 aa		11.5	□□□□□ -0.57
TOM1L1-223	ENST00000576932	PDE3A	Q14432	1141 aa		11.5	□□□□□ -0.57
TOM1L1-223	ENST00000576932	TJAP1	Q5JTD0	557 aa		11.5	□□□□□ -0.57
TOM1L1-223	ENST00000576932	GTF3C2	Q8WUA4	911 aa	Predicted RBP	11.5	□□□□□ -0.57
TOM1L1-223	ENST00000576932	DENND2A	Q9ULE3	1009 aa		11.5	□□□□□ -0.57
TOM1L1-223	ENST00000576932	LTBP2	Q14767	1821 aa		11.49	□□□□□ -0.57
TOM1L1-223	ENST00000576932	MYH2	Q9UKX2	1941 aa		11.49	□□□□□ -0.57
TOM1L1-223	ENST00000576932	USP17L5	A8MUK1	530 aa		11.49	□□□□□ -0.57
TOM1L1-223	ENST00000576932	MAP4K4	O95819	1239 aa	Predicted RBP	11.49	□□□□□ -0.57
TOM1L1-223	ENST00000576932	FOSL2	P15408	326 aa		11.49	□□□□□ -0.57
TOM1L1-223	ENST00000576932	CCND3	P30281	292 aa	Predicted RBP	11.49	□□□□□ -0.57
TOM1L1-223	ENST00000576932	HMGCS2	P54868	508 aa		11.49	□□□□□ -0.57
TOM1L1-223	ENST00000576932	SLC4A10	Q6U841	1118 aa		11.49	□□□□□ -0.57
TOM1L1-223	ENST00000576932	CCDC84	Q86UT8	332 aa	Predicted RBP	11.49	□□□□□ -0.57
TOM1L1-223	ENST00000576932	GPRC5A	Q8NFJ5	357 aa		11.49	□□□□□ -0.57
TOM1L1-223	ENST00000576932	MYLIP	Q8WY64	445 aa		11.49	□□□□□ -0.57
TOM1L1-223	ENST00000576932	RNF166	Q96A37	237 aa	Predicted RBP	11.49	□□□□□ -0.57
TOM1L1-223	ENST00000576932	APBA2	Q99767	749 aa		11.49	□□□□□ -0.57
TOM1L1-223	ENST00000576932	AS3MT	Q9HBK9	375 aa		11.49	□□□□□ -0.57
TOM1L1-223	ENST00000576932	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	11.49	□□□□□ -0.57
TOM1L1-223	ENST00000576932	PDS5A	Q29RF7	1337 aa	Known RBP	11.49	□□□□□ -0.57
TOM1L1-223	ENST00000576932	FRMPD3	Q5JV73	1810 aa		11.49	□□□□□ -0.57
TOM1L1-223	ENST00000576932	EYA2	O00167	538 aa		11.48	□□□□□ -0.57
TOM1L1-223	ENST00000576932	DNM1L	O00429	736 aa		11.48	□□□□□ -0.57
TOM1L1-223	ENST00000576932	PLA2G5	P39877	138 aa		11.48	□□□□□ -0.57
TOM1L1-223	ENST00000576932	CAP2	P40123	477 aa		11.48	□□□□□ -0.57
TOM1L1-223	ENST00000576932	IRX3	P78415	501 aa	Predicted RBP	11.48	□□□□□ -0.57
TOM1L1-223	ENST00000576932	DDX10	Q13206	875 aa	Known RBP	11.48	□□□□□ -0.57
TOM1L1-223	ENST00000576932	CSPP1	Q1MSJ5	1256 aa		11.48	□□□□□ -0.57
TOM1L1-223	ENST00000576932	TMEM259	Q4ZIN3	620 aa		11.48	□□□□□ -0.57
TOM1L1-223	ENST00000576932	MORN1	Q5T089	497 aa		11.48	□□□□□ -0.57
TOM1L1-223	ENST00000576932	WDR63	Q8IWG1	891 aa		11.48	□□□□□ -0.57
TOM1L1-223	ENST00000576932	LPAR1	Q92633	364 aa		11.48	□□□□□ -0.57
TOM1L1-223	ENST00000576932	WDR18	Q9BV38	432 aa		11.48	□□□□□ -0.57
TOM1L1-223	ENST00000576932	SENP6	Q9GZR1	1112 aa	Predicted RBP	11.48	□□□□□ -0.57
TOM1L1-223	ENST00000576932	TTYH1	Q9H313	450 aa	Predicted RBP	11.48	□□□□□ -0.57
TOM1L1-223	ENST00000576932	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	11.48	□□□□□ -0.57
TOM1L1-223	ENST00000576932	DDX4	Q9NQI0	724 aa	Known RBP	11.48	□□□□□ -0.57
TOM1L1-223	ENST00000576932	NCOR1	O75376	2440 aa		11.47	□□□□□ -0.57
TOM1L1-223	ENST00000576932	APBB1	O00213	710 aa		11.47	□□□□□ -0.57
TOM1L1-223	ENST00000576932	NDUFV2	P19404	249 aa		11.47	□□□□□ -0.57
TOM1L1-223	ENST00000576932	HERVK_113	P62684	666 aa		11.47	□□□□□ -0.57
TOM1L1-223	ENST00000576932	EXOSC9	Q06265	439 aa	Known RBP	11.47	□□□□□ -0.57
TOM1L1-223	ENST00000576932	MTMR2	Q13614	643 aa		11.47	□□□□□ -0.57
TOM1L1-223	ENST00000576932	SHH	Q15465	462 aa		11.47	□□□□□ -0.57
TOM1L1-223	ENST00000576932	ATAD5	Q96QE3	1844 aa		11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	GPR75-ASB3	A0A0A6YYF3	556 aa		11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	C19orf81	C9J6K1	198 aa		11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	BTD	P43251	543 aa		11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	BACE1	P56817	501 aa		11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	ERVK-9	P63128	1117 aa		11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	ERVK-24	P63145	666 aa		11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	PICALM	Q13492	652 aa		11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	ATP2B3	Q16720	1220 aa		11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	MFSD14C	Q5VZR4	134 aa		11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	SPTY2D1	Q68D10	685 aa	Predicted RBP	11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	GPR142	Q7Z601	462 aa		11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	PLEKHH3	Q7Z736	793 aa		11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	DZIP1	Q86YF9	867 aa	Known RBP	11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	KLHDC4	Q8TBB5	520 aa		11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	TXNRD2	Q9NNW7	524 aa		11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	TMOD4	Q9NZQ9	345 aa		11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	RBPJL	Q9UBG7	517 aa		11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	LIMD1	Q9UGP4	676 aa		11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	DDX20	Q9UHI6	824 aa	Known RBP	11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	HERC5	Q9UII4	1024 aa	Known RBP	11.46	□□□□□ -0.57
TOM1L1-223	ENST00000576932	MROH7-TTC4	A0A0A0MT08	1334 aa		11.45	□□□□□ -0.58
TOM1L1-223	ENST00000576932	GLRX3	O76003	335 aa	Known RBP	11.45	□□□□□ -0.58
TOM1L1-223	ENST00000576932	CIAO1	O76071	339 aa		11.45	□□□□□ -0.58
TOM1L1-223	ENST00000576932	ASNS	P08243	561 aa		11.45	□□□□□ -0.58
TOM1L1-223	ENST00000576932	SLURP2	P0DP57	97 aa		11.45	□□□□□ -0.58
TOM1L1-223	ENST00000576932	RFX5	P48382	616 aa	Predicted RBP	11.45	□□□□□ -0.58
TOM1L1-223	ENST00000576932	RHBDL3	P58872	404 aa		11.45	□□□□□ -0.58
TOM1L1-223	ENST00000576932	RTP1	P59025	263 aa		11.45	□□□□□ -0.58
TOM1L1-223	ENST00000576932	CCL14	Q16627	93 aa		11.45	□□□□□ -0.58
TOM1L1-223	ENST00000576932	C9orf50	Q5SZB4	431 aa		11.45	□□□□□ -0.58
TOM1L1-223	ENST00000576932	ATG9A	Q7Z3C6	839 aa		11.45	□□□□□ -0.58
TOM1L1-223	ENST00000576932	CCAR1	Q8IX12	1150 aa	Known RBP	11.45	□□□□□ -0.58
TOM1L1-223	ENST00000576932	P2RX7	Q99572	595 aa	Known RBP	11.45	□□□□□ -0.58
TOM1L1-223	ENST00000576932	GINM1	Q9NU53	330 aa		11.45	□□□□□ -0.58
TOM1L1-223	ENST00000576932	SALL2	Q9Y467	1007 aa	Predicted RBP	11.45	□□□□□ -0.58
TOM1L1-223	ENST00000576932	HOXC6	P09630	235 aa		11.44	□□□□□ -0.58
TOM1L1-223	ENST00000576932	SNX17	Q15036	470 aa		11.44	□□□□□ -0.58
TOM1L1-223	ENST00000576932	C1orf53	Q5VUE5	145 aa		11.44	□□□□□ -0.58
TOM1L1-223	ENST00000576932	PPP2R2D	Q66LE6	453 aa		11.44	□□□□□ -0.58
TOM1L1-223	ENST00000576932	SPNS2	Q8IVW8	549 aa		11.44	□□□□□ -0.58
TOM1L1-223	ENST00000576932	ATXN2L	Q8WWM7	1075 aa	Known RBP	11.44	□□□□□ -0.58
TOM1L1-223	ENST00000576932	FAM122A	Q96E09	287 aa		11.44	□□□□□ -0.58

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