RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 PTPREP23469 700 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 BMP8BP34820 402 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 ADD2P35612 726 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 RGS2P41220 211 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 USP14P54578 494 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 GRB14Q14449 540 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 TTF1Q15361 905 aaPredicted RBP8.15□□□□□ -1.1
VPS53-213ENST00000572334 HSP90AB4PQ58FF6 505 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 C20orf194Q5TEA3 1177 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 C7orf61Q8IZ16 206 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 CLASRPQ8N2M8 674 aaKnown RBP8.15□□□□□ -1.1
VPS53-213ENST00000572334 TRPV1Q8NER1 839 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 DYNLL2Q96FJ2 89 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 LRCH3Q96II8 777 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 DNAJC2Q99543 621 aaKnown RBP8.15□□□□□ -1.1
VPS53-213ENST00000572334 APBA2Q99767 749 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 NBPF3Q9H094 633 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 BOLA2Q9H3K6 86 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 C11orf49Q9H6J7 331 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 RPAP3Q9H6T3 665 aaPredicted RBP8.15□□□□□ -1.1
VPS53-213ENST00000572334 ARMT1Q9H993 441 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 MCM9Q9NXL9 1143 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 ZMYND8Q9ULU4 1186 aaPredicted RBP8.15□□□□□ -1.1
VPS53-213ENST00000572334 DDX19BQ9UMR2 479 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 CDH23Q9H251 3354 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 SLC15A5A6NIM6 579 aa8.14□□□□□ -1.11
VPS53-213ENST00000572334 RAB11FIP3O75154 756 aa8.14□□□□□ -1.11
VPS53-213ENST00000572334 POLR3DP05423 398 aaPredicted RBP8.14□□□□□ -1.11
VPS53-213ENST00000572334 AKR1B1P15121 316 aa8.14□□□□□ -1.11
VPS53-213ENST00000572334 SYN1P17600 705 aa8.14□□□□□ -1.11
VPS53-213ENST00000572334 ATP5JP18859 108 aa8.14□□□□□ -1.11
VPS53-213ENST00000572334 PDE3AQ14432 1141 aa8.14□□□□□ -1.11
VPS53-213ENST00000572334 LRRC26Q2I0M4 334 aa8.14□□□□□ -1.11
VPS53-213ENST00000572334 TRMT44Q8IYL2 757 aaKnown RBP8.14□□□□□ -1.11
VPS53-213ENST00000572334 FEZ1Q99689 392 aa8.14□□□□□ -1.11
VPS53-213ENST00000572334 HAUS7Q99871 368 aa8.14□□□□□ -1.11
VPS53-213ENST00000572334 CRNKL1Q9BZJ0 848 aaKnown RBP8.14□□□□□ -1.11
VPS53-213ENST00000572334 PAG1Q9NWQ8 432 aa8.14□□□□□ -1.11
VPS53-213ENST00000572334 A0A0C4DFX4 3053 aa8.13□□□□□ -1.11
VPS53-213ENST00000572334 SMARCA5O60264 1052 aaPredicted RBP8.13□□□□□ -1.11
VPS53-213ENST00000572334 COBLO75128 1261 aa8.13□□□□□ -1.11
VPS53-213ENST00000572334 MBD4O95243 580 aa8.13□□□□□ -1.11
VPS53-213ENST00000572334 IFIT2P09913 472 aaKnown RBP8.13□□□□□ -1.11
VPS53-213ENST00000572334 MAGEA10P43363 369 aaPredicted RBP8.13□□□□□ -1.11
VPS53-213ENST00000572334 C12orf60Q5U649 245 aa8.13□□□□□ -1.11
VPS53-213ENST00000572334 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.13□□□□□ -1.11
VPS53-213ENST00000572334 MOV10L1Q9BXT6 1211 aaKnown RBP8.13□□□□□ -1.11
VPS53-213ENST00000572334 PUS7LQ9H0K6 701 aaKnown RBP8.13□□□□□ -1.11
VPS53-213ENST00000572334 CABP5Q9NP86 173 aa8.13□□□□□ -1.11
VPS53-213ENST00000572334 TMX2Q9Y320 296 aa8.13□□□□□ -1.11
VPS53-213ENST00000572334 CUL9Q8IWT3 2517 aa8.13□□□□□ -1.11
VPS53-213ENST00000572334 USP17L12C9JPN9 530 aa8.12□□□□□ -1.11
VPS53-213ENST00000572334 USP17L21D6R901 530 aa8.12□□□□□ -1.11
VPS53-213ENST00000572334 HMMRO75330 724 aa8.12□□□□□ -1.11
VPS53-213ENST00000572334 MS4A1P11836 297 aa8.12□□□□□ -1.11
VPS53-213ENST00000572334 CYBAP13498 195 aa8.12□□□□□ -1.11
VPS53-213ENST00000572334 CYP2C19P33261 490 aa8.12□□□□□ -1.11
VPS53-213ENST00000572334 CDK8P49336 464 aa8.12□□□□□ -1.11
VPS53-213ENST00000572334 CCNA1P78396 465 aa8.12□□□□□ -1.11
VPS53-213ENST00000572334 COG2Q14746 738 aa8.12□□□□□ -1.11
VPS53-213ENST00000572334 UBE3CQ15386 1083 aa8.12□□□□□ -1.11
VPS53-213ENST00000572334 TMEM179Q6ZVK1 233 aa8.12□□□□□ -1.11
VPS53-213ENST00000572334 C16orf86Q6ZW13 317 aa8.12□□□□□ -1.11
VPS53-213ENST00000572334 ATG4CQ96DT6 458 aa8.12□□□□□ -1.11
VPS53-213ENST00000572334 SPATC1LQ9H0A9 340 aa8.12□□□□□ -1.11
VPS53-213ENST00000572334 ATP8A2Q9NTI2 1148 aa8.12□□□□□ -1.11
VPS53-213ENST00000572334 SWAP70Q9UH65 585 aa8.12□□□□□ -1.11
VPS53-213ENST00000572334 DDX20Q9UHI6 824 aaKnown RBP8.12□□□□□ -1.11
VPS53-213ENST00000572334 RCAN3Q9UKA8 241 aa8.12□□□□□ -1.11
VPS53-213ENST00000572334 ADAMTS5Q9UNA0 930 aa8.12□□□□□ -1.11
VPS53-213ENST00000572334 UNC80Q8N2C7 3258 aa8.12□□□□□ -1.11
VPS53-213ENST00000572334 MPHOSPH10O00566 681 aaKnown RBP8.11□□□□□ -1.11
VPS53-213ENST00000572334 ERCC3P19447 782 aa8.11□□□□□ -1.11
VPS53-213ENST00000572334 ADORA2AP29274 412 aa8.11□□□□□ -1.11
VPS53-213ENST00000572334 TMEM132BQ14DG7 1078 aa8.11□□□□□ -1.11
VPS53-213ENST00000572334 OLFML2BQ68BL8 750 aa8.11□□□□□ -1.11
VPS53-213ENST00000572334 CTR9Q6PD62 1173 aa8.11□□□□□ -1.11
VPS53-213ENST00000572334 SPICE1Q8N0Z3 855 aa8.11□□□□□ -1.11
VPS53-213ENST00000572334 SHCBP1Q8NEM2 672 aa8.11□□□□□ -1.11
VPS53-213ENST00000572334 REPS2Q8NFH8 660 aa8.11□□□□□ -1.11
VPS53-213ENST00000572334 VCPKMTQ9H867 229 aa8.11□□□□□ -1.11
VPS53-213ENST00000572334 FBXO28Q9NVF7 368 aa8.11□□□□□ -1.11
VPS53-213ENST00000572334 HOXC10Q9NYD6 342 aa8.11□□□□□ -1.11
VPS53-213ENST00000572334 EYSQ5T1H1 3165 aa8.11□□□□□ -1.11
VPS53-213ENST00000572334 LCTP09848 1927 aa8.11□□□□□ -1.11
VPS53-213ENST00000572334 GSG1L2A8MUP6 293 aa8.1□□□□□ -1.11
VPS53-213ENST00000572334 GLRX3O76003 335 aaKnown RBP8.1□□□□□ -1.11
VPS53-213ENST00000572334 EEF2P13639 858 aaKnown RBP8.1□□□□□ -1.11
VPS53-213ENST00000572334 ATP2B2Q01814 1243 aa8.1□□□□□ -1.11
VPS53-213ENST00000572334 ICA1Q05084 483 aa8.1□□□□□ -1.11
VPS53-213ENST00000572334 LRIT3Q3SXY7 679 aa8.1□□□□□ -1.11
VPS53-213ENST00000572334 PRAMEF19Q5SWL8 479 aa8.1□□□□□ -1.11
VPS53-213ENST00000572334 WDR78Q5VTH9 848 aa8.1□□□□□ -1.11
VPS53-213ENST00000572334 MFSD14CQ5VZR4 134 aa8.1□□□□□ -1.11
VPS53-213ENST00000572334 CCAR1Q8IX12 1150 aaKnown RBP8.1□□□□□ -1.11
VPS53-213ENST00000572334 LPAR1Q92633 364 aa8.1□□□□□ -1.11
VPS53-213ENST00000572334 OSBP2Q969R2 916 aa8.1□□□□□ -1.11
VPS53-213ENST00000572334 CCDC17Q96LX7 622 aa8.1□□□□□ -1.11
VPS53-213ENST00000572334 STRBPQ96SI9 672 aaKnown RBP8.1□□□□□ -1.11
VPS53-213ENST00000572334 LRRCC1Q9C099 1032 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms