RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 MORN1Q5T089 497 aa14□□□□□ -0.17
LDLR-212ENST00000560467 RNF20Q5VTR2 975 aa14□□□□□ -0.17
LDLR-212ENST00000560467 GPR142Q7Z601 462 aa14□□□□□ -0.17
LDLR-212ENST00000560467 CERS3Q8IU89 383 aa14□□□□□ -0.17
LDLR-212ENST00000560467 FOXP4Q8IVH2 680 aaPredicted RBP14□□□□□ -0.17
LDLR-212ENST00000560467 MAGEB6Q8N7X4 407 aa14□□□□□ -0.17
LDLR-212ENST00000560467 DDRGK1Q96HY6 314 aa14□□□□□ -0.17
LDLR-212ENST00000560467 C22orf23Q9BZE7 217 aa14□□□□□ -0.17
LDLR-212ENST00000560467 UBE2OQ9C0C9 1292 aaKnown RBP14□□□□□ -0.17
LDLR-212ENST00000560467 DDX60LQ5H9U9 1706 aaKnown RBP13.99□□□□□ -0.17
LDLR-212ENST00000560467 GH2P01242 217 aa13.99□□□□□ -0.17
LDLR-212ENST00000560467 PDE6AP16499 860 aa13.99□□□□□ -0.17
LDLR-212ENST00000560467 GNAT2P19087 354 aa13.99□□□□□ -0.17
LDLR-212ENST00000560467 CYP7A1P22680 504 aa13.99□□□□□ -0.17
LDLR-212ENST00000560467 ADD2P35612 726 aa13.99□□□□□ -0.17
LDLR-212ENST00000560467 ANP32AP39687 249 aaKnown RBP13.99□□□□□ -0.17
LDLR-212ENST00000560467 RGS2P41220 211 aa13.99□□□□□ -0.17
LDLR-212ENST00000560467 ZYXQ15942 572 aaKnown RBP13.99□□□□□ -0.17
LDLR-212ENST00000560467 LRRC26Q2I0M4 334 aa13.99□□□□□ -0.17
LDLR-212ENST00000560467 LRIT3Q3SXY7 679 aa13.99□□□□□ -0.17
LDLR-212ENST00000560467 LHX8Q68G74 356 aa13.99□□□□□ -0.17
LDLR-212ENST00000560467 PLEKHH3Q7Z736 793 aa13.99□□□□□ -0.17
LDLR-212ENST00000560467 CCAR1Q8IX12 1150 aaKnown RBP13.99□□□□□ -0.17
LDLR-212ENST00000560467 TDHQ8IZJ6 230 aa13.99□□□□□ -0.17
LDLR-212ENST00000560467 APBA2Q99767 749 aa13.99□□□□□ -0.17
LDLR-212ENST00000560467 CTNNA3Q9UI47 895 aa13.99□□□□□ -0.17
LDLR-212ENST00000560467 ZNF532Q9HCE3 1301 aa13.98□□□□□ -0.17
LDLR-212ENST00000560467 CNMDO75829 334 aa13.98□□□□□ -0.17
LDLR-212ENST00000560467 HLA-DOAP06340 250 aa13.98□□□□□ -0.17
LDLR-212ENST00000560467 ZMYM1Q5SVZ6 1142 aa13.98□□□□□ -0.17
LDLR-212ENST00000560467 GPR153Q6NV75 609 aa13.98□□□□□ -0.17
LDLR-212ENST00000560467 USP17L2Q6R6M4 530 aa13.98□□□□□ -0.17
LDLR-212ENST00000560467 TRMT44Q8IYL2 757 aaKnown RBP13.98□□□□□ -0.17
LDLR-212ENST00000560467 MIGA1Q8NAN2 632 aa13.98□□□□□ -0.17
LDLR-212ENST00000560467 FAM227BQ96M60 508 aa13.98□□□□□ -0.17
LDLR-212ENST00000560467 FEZ1Q99689 392 aa13.98□□□□□ -0.17
LDLR-212ENST00000560467 NACAP1Q9BZK3 213 aa13.98□□□□□ -0.17
LDLR-212ENST00000560467 GINM1Q9NU53 330 aa13.98□□□□□ -0.17
LDLR-212ENST00000560467 PLXNB2O15031 1838 aa13.98□□□□□ -0.17
LDLR-212ENST00000560467 ATAD5Q96QE3 1844 aa13.97□□□□□ -0.17
LDLR-212ENST00000560467 APPP05067 770 aa13.97□□□□□ -0.17
LDLR-212ENST00000560467 MDM2Q00987 491 aaPredicted RBP13.97□□□□□ -0.17
LDLR-212ENST00000560467 GTF3C2Q8WUA4 911 aaPredicted RBP13.97□□□□□ -0.17
LDLR-212ENST00000560467 CWC22Q9HCG8 908 aaKnown RBP13.97□□□□□ -0.17
LDLR-212ENST00000560467 MTMR10Q9NXD2 777 aa13.97□□□□□ -0.17
LDLR-212ENST00000560467 FLRT1Q9NZU1 646 aa13.97□□□□□ -0.17
LDLR-212ENST00000560467 U3KPZ7 1027 aaPredicted RBP13.97□□□□□ -0.17
LDLR-212ENST00000560467 MAST2Q6P0Q8 1798 aa13.96□□□□□ -0.17
LDLR-212ENST00000560467 CCDC171Q6TFL3 1326 aa13.96□□□□□ -0.17
LDLR-212ENST00000560467 MAGEB6P1A0A0J9YX57 407 aa13.96□□□□□ -0.17
LDLR-212ENST00000560467 SEC24BO95487 1268 aa13.96□□□□□ -0.17
LDLR-212ENST00000560467 MAP2K5Q13163 448 aa13.96□□□□□ -0.17
LDLR-212ENST00000560467 WDR78Q5VTH9 848 aa13.96□□□□□ -0.17
LDLR-212ENST00000560467 IL27Q8NEV9 243 aa13.96□□□□□ -0.17
LDLR-212ENST00000560467 ACER1Q8TDN7 264 aa13.96□□□□□ -0.17
LDLR-212ENST00000560467 C12orf42Q96LP6 360 aa13.96□□□□□ -0.17
LDLR-212ENST00000560467 USP26Q9BXU7 913 aa13.96□□□□□ -0.17
LDLR-212ENST00000560467 TSHZ2Q9NRE2 1034 aa13.96□□□□□ -0.17
LDLR-212ENST00000560467 DAXXQ9UER7 740 aaPredicted RBP13.96□□□□□ -0.17
LDLR-212ENST00000560467 STXBP5LQ9Y2K9 1186 aa13.96□□□□□ -0.17
LDLR-212ENST00000560467 A0A0D9SFI3 127 aa13.95□□□□□ -0.18
LDLR-212ENST00000560467 USP17L15C9J2P7 530 aa13.95□□□□□ -0.18
LDLR-212ENST00000560467 USP17L13C9JLJ4 530 aa13.95□□□□□ -0.18
LDLR-212ENST00000560467 USP17L11C9JVI0 530 aa13.95□□□□□ -0.18
LDLR-212ENST00000560467 USP17L18D6R9N7 530 aa13.95□□□□□ -0.18
LDLR-212ENST00000560467 USP17L22D6RA61 530 aa13.95□□□□□ -0.18
LDLR-212ENST00000560467 USP17L17D6RBQ6 530 aa13.95□□□□□ -0.18
LDLR-212ENST00000560467 USP17L19D6RCP7 530 aa13.95□□□□□ -0.18
LDLR-212ENST00000560467 USP17L20D6RJB6 530 aa13.95□□□□□ -0.18
LDLR-212ENST00000560467 VCAM1P19320 739 aa13.95□□□□□ -0.18
LDLR-212ENST00000560467 USP5P45974 858 aa13.95□□□□□ -0.18
LDLR-212ENST00000560467 USP17L24Q0WX57 530 aa13.95□□□□□ -0.18
LDLR-212ENST00000560467 RAB3GAP1Q15042 981 aa13.95□□□□□ -0.18
LDLR-212ENST00000560467 TATDN1Q6P1N9 297 aa13.95□□□□□ -0.18
LDLR-212ENST00000560467 RABGAP1Q9Y3P9 1069 aa13.95□□□□□ -0.18
LDLR-212ENST00000560467 CCNA1P78396 465 aa13.94□□□□□ -0.18
LDLR-212ENST00000560467 MFSD14CQ5VZR4 134 aa13.94□□□□□ -0.18
LDLR-212ENST00000560467 CATSPERGQ6ZRH7 1159 aa13.94□□□□□ -0.18
LDLR-212ENST00000560467 AMOTL1Q8IY63 956 aa13.94□□□□□ -0.18
LDLR-212ENST00000560467 TBC1D32Q96NH3 1257 aa13.94□□□□□ -0.18
LDLR-212ENST00000560467 DSCC1Q9BVC3 393 aa13.94□□□□□ -0.18
LDLR-212ENST00000560467 BTBD7Q9P203 1132 aa13.94□□□□□ -0.18
LDLR-212ENST00000560467 SERPINB13Q9UIV8 391 aa13.94□□□□□ -0.18
LDLR-212ENST00000560467 SLC15A5A6NIM6 579 aa13.93□□□□□ -0.18
LDLR-212ENST00000560467 PATL2C9JE40 543 aaKnown RBP13.93□□□□□ -0.18
LDLR-212ENST00000560467 GPAA1O43292 621 aa13.93□□□□□ -0.18
LDLR-212ENST00000560467 PTPREP23469 700 aa13.93□□□□□ -0.18
LDLR-212ENST00000560467 RBM25P49756 843 aaKnown RBP13.93□□□□□ -0.18
LDLR-212ENST00000560467 ANAPC15P60006 121 aa13.93□□□□□ -0.18
LDLR-212ENST00000560467 EVX2Q03828 476 aa13.93□□□□□ -0.18
LDLR-212ENST00000560467 ABCB5Q2M3G0 1257 aa13.93□□□□□ -0.18
LDLR-212ENST00000560467 TRPV1Q8NER1 839 aa13.93□□□□□ -0.18
LDLR-212ENST00000560467 NPLOC4Q8TAT6 608 aa13.93□□□□□ -0.18
LDLR-212ENST00000560467 OSBP2Q969R2 916 aa13.93□□□□□ -0.18
LDLR-212ENST00000560467 CRNKL1Q9BZJ0 848 aaKnown RBP13.93□□□□□ -0.18
LDLR-212ENST00000560467 SENP6Q9GZR1 1112 aaPredicted RBP13.93□□□□□ -0.18
LDLR-212ENST00000560467 KIAA1683Q9H0B3 1180 aa13.93□□□□□ -0.18
LDLR-212ENST00000560467 EHD4Q9H223 541 aa13.93□□□□□ -0.18
LDLR-212ENST00000560467 RBM19Q9Y4C8 960 aaKnown RBP13.93□□□□□ -0.18
LDLR-212ENST00000560467 SPDYE16A6NNV3 312 aaPredicted RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms