RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 NYAP2Q9P242 653 aa11.1□□□□□ -0.63
LDLR-211ENST00000560173 USP17L15C9J2P7 530 aa11.09□□□□□ -0.63
LDLR-211ENST00000560173 USP17L13C9JLJ4 530 aa11.09□□□□□ -0.63
LDLR-211ENST00000560173 USP17L11C9JVI0 530 aa11.09□□□□□ -0.63
LDLR-211ENST00000560173 USP17L18D6R9N7 530 aa11.09□□□□□ -0.63
LDLR-211ENST00000560173 USP17L22D6RA61 530 aa11.09□□□□□ -0.63
LDLR-211ENST00000560173 USP17L17D6RBQ6 530 aa11.09□□□□□ -0.63
LDLR-211ENST00000560173 USP17L19D6RCP7 530 aa11.09□□□□□ -0.63
LDLR-211ENST00000560173 USP17L20D6RJB6 530 aa11.09□□□□□ -0.63
LDLR-211ENST00000560173 PCP11498 1178 aaKnown RBP11.09□□□□□ -0.63
LDLR-211ENST00000560173 GCLCP48506 637 aaPredicted RBP11.09□□□□□ -0.63
LDLR-211ENST00000560173 HERVK_113P62684 666 aa11.09□□□□□ -0.63
LDLR-211ENST00000560173 PTH1RQ03431 593 aa11.09□□□□□ -0.63
LDLR-211ENST00000560173 USP17L24Q0WX57 530 aa11.09□□□□□ -0.63
LDLR-211ENST00000560173 PKN2Q16513 984 aaKnown RBP11.09□□□□□ -0.63
LDLR-211ENST00000560173 FAM110CQ1W6H9 321 aa11.09□□□□□ -0.63
LDLR-211ENST00000560173 AKNAD1Q5T1N1 836 aa11.09□□□□□ -0.63
LDLR-211ENST00000560173 CATSPERGQ6ZRH7 1159 aa11.09□□□□□ -0.63
LDLR-211ENST00000560173 OTOP1Q7RTM1 612 aa11.09□□□□□ -0.63
LDLR-211ENST00000560173 P2RX7Q99572 595 aaKnown RBP11.09□□□□□ -0.63
LDLR-211ENST00000560173 ESYT1Q9BSJ8 1104 aa11.09□□□□□ -0.63
LDLR-211ENST00000560173 ARHGAP39Q9C0H5 1083 aa11.09□□□□□ -0.63
LDLR-211ENST00000560173 RPAP3Q9H6T3 665 aaPredicted RBP11.09□□□□□ -0.63
LDLR-211ENST00000560173 CTNNA3Q9UI47 895 aa11.09□□□□□ -0.63
LDLR-211ENST00000560173 RBBP6Q7Z6E9 1792 aaKnown RBP11.08□□□□□ -0.64
LDLR-211ENST00000560173 ZSWIM8A7E2V4 1837 aa11.08□□□□□ -0.64
LDLR-211ENST00000560173 TSPY2A6NKD2 308 aa11.08□□□□□ -0.64
LDLR-211ENST00000560173 ZNF213O14771 459 aa11.08□□□□□ -0.64
LDLR-211ENST00000560173 RANBP6O60518 1105 aaKnown RBP11.08□□□□□ -0.64
LDLR-211ENST00000560173 TTLL1O95922 423 aa11.08□□□□□ -0.64
LDLR-211ENST00000560173 CTGFP29279 349 aa11.08□□□□□ -0.64
LDLR-211ENST00000560173 POTEEQ6S8J3 1075 aa11.08□□□□□ -0.64
LDLR-211ENST00000560173 MFSD6Q6ZSS7 791 aa11.08□□□□□ -0.64
LDLR-211ENST00000560173 SPICE1Q8N0Z3 855 aa11.08□□□□□ -0.64
LDLR-211ENST00000560173 ANKRD13CQ8N6S4 541 aa11.08□□□□□ -0.64
LDLR-211ENST00000560173 GTF3C2Q8WUA4 911 aaPredicted RBP11.08□□□□□ -0.64
LDLR-211ENST00000560173 MKL1Q969V6 931 aa11.08□□□□□ -0.64
LDLR-211ENST00000560173 TRIM47Q96LD4 638 aa11.08□□□□□ -0.64
LDLR-211ENST00000560173 RNF41Q9H4P4 317 aaPredicted RBP11.08□□□□□ -0.64
LDLR-211ENST00000560173 EFCC1Q9HA90 598 aa11.08□□□□□ -0.64
LDLR-211ENST00000560173 GOPCQ9HD26 462 aa11.08□□□□□ -0.64
LDLR-211ENST00000560173 MORF4L1Q9UBU8 362 aa11.08□□□□□ -0.64
LDLR-211ENST00000560173 CLIP2Q9UDT6 1046 aa11.08□□□□□ -0.64
LDLR-211ENST00000560173 SYNPO2Q9UMS6 1093 aa11.08□□□□□ -0.64
LDLR-211ENST00000560173 TRIM17Q9Y577 477 aa11.08□□□□□ -0.64
LDLR-211ENST00000560173 NEDD4P46934 1319 aa11.08□□□□□ -0.64
LDLR-211ENST00000560173 SPDYE16A6NNV3 312 aaPredicted RBP11.07□□□□□ -0.64
LDLR-211ENST00000560173 WDR46O15213 610 aaKnown RBP11.07□□□□□ -0.64
LDLR-211ENST00000560173 NMT2O60551 498 aa11.07□□□□□ -0.64
LDLR-211ENST00000560173 CDC45O75419 566 aa11.07□□□□□ -0.64
LDLR-211ENST00000560173 NDUFB10O96000 172 aa11.07□□□□□ -0.64
LDLR-211ENST00000560173 NOVP48745 357 aa11.07□□□□□ -0.64
LDLR-211ENST00000560173 NT5C2P49902 561 aa11.07□□□□□ -0.64
LDLR-211ENST00000560173 KIF22Q14807 665 aa11.07□□□□□ -0.64
LDLR-211ENST00000560173 ARHGEF6Q15052 776 aa11.07□□□□□ -0.64
LDLR-211ENST00000560173 IMMTQ16891 758 aaKnown RBP11.07□□□□□ -0.64
LDLR-211ENST00000560173 RRP12Q5JTH9 1297 aaKnown RBP11.07□□□□□ -0.64
LDLR-211ENST00000560173 PPP4R3BQ5MIZ7 849 aa11.07□□□□□ -0.64
LDLR-211ENST00000560173 LBX2Q6XYB7 198 aa11.07□□□□□ -0.64
LDLR-211ENST00000560173 LRRC47Q8N1G4 583 aaKnown RBP11.07□□□□□ -0.64
LDLR-211ENST00000560173 NKX2-3Q8TAU0 364 aa11.07□□□□□ -0.64
LDLR-211ENST00000560173 TANGO6Q9C0B7 1094 aa11.07□□□□□ -0.64
LDLR-211ENST00000560173 TXNRD2Q9NNW7 524 aa11.07□□□□□ -0.64
LDLR-211ENST00000560173 IL17RBQ9NRM6 502 aa11.07□□□□□ -0.64
LDLR-211ENST00000560173 TOMM22Q9NS69 142 aa11.07□□□□□ -0.64
LDLR-211ENST00000560173 RBPJLQ9UBG7 517 aa11.07□□□□□ -0.64
LDLR-211ENST00000560173 U3KPZ7 1027 aaPredicted RBP11.07□□□□□ -0.64
LDLR-211ENST00000560173 F5H6K3 240 aa11.06□□□□□ -0.64
LDLR-211ENST00000560173 PEX10O60683 326 aa11.06□□□□□ -0.64
LDLR-211ENST00000560173 GNRH1P01148 92 aa11.06□□□□□ -0.64
LDLR-211ENST00000560173 PSMC4P43686 418 aa11.06□□□□□ -0.64
LDLR-211ENST00000560173 FCGRTP55899 365 aa11.06□□□□□ -0.64
LDLR-211ENST00000560173 KLRC3Q07444 240 aa11.06□□□□□ -0.64
LDLR-211ENST00000560173 FBXO46Q6PJ61 603 aaPredicted RBP11.06□□□□□ -0.64
LDLR-211ENST00000560173 GMCL1P1Q8NEA9 526 aa11.06□□□□□ -0.64
LDLR-211ENST00000560173 MAP4K1Q92918 833 aa11.06□□□□□ -0.64
LDLR-211ENST00000560173 LSG1Q9H089 658 aaKnown RBP11.06□□□□□ -0.64
LDLR-211ENST00000560173 TCP11L1Q9NUJ3 509 aa11.06□□□□□ -0.64
LDLR-211ENST00000560173 RLFQ13129 1914 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 MYH4Q9Y623 1939 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 CENPFP49454 3210 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 A0A0G2JMZ2 1700 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 RAD21O60216 631 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 CNMDO75829 334 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 FLOT1O75955 427 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 ECM2O94769 699 aaPredicted RBP11.05□□□□□ -0.64
LDLR-211ENST00000560173 FMNL1O95466 1100 aaPredicted RBP11.05□□□□□ -0.64
LDLR-211ENST00000560173 CYP21A2P08686 494 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 DSG3P32926 999 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 FXR1P51114 621 aaKnown RBP eCLIP11.05□□□□□ -0.64
LDLR-211ENST00000560173 ERVK-9P63128 1117 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 ERVK-24P63145 666 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 COG2Q14746 738 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 FAM83BQ5T0W9 1011 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 KIAA1211Q6ZU35 1233 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 GPRC5AQ8NFJ5 357 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 ESR2Q92731 530 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 NUP88Q99567 741 aaPredicted RBP11.05□□□□□ -0.64
LDLR-211ENST00000560173 PAGR1Q9BTK6 254 aa11.05□□□□□ -0.64
LDLR-211ENST00000560173 STX8Q9UNK0 236 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms