RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 PLS1Q14651 629 aa20.54■□□□□ 0.88
VPS29-204ENST00000548259 SNX17Q15036 470 aa20.54■□□□□ 0.88
VPS29-204ENST00000548259 C1orf53Q5VUE5 145 aa20.54■□□□□ 0.88
VPS29-204ENST00000548259 SH2D4AQ9H788 454 aa20.54■□□□□ 0.88
VPS29-204ENST00000548259 DBNLQ9UJU6 430 aaKnown RBP20.54■□□□□ 0.88
VPS29-204ENST00000548259 TACC3Q9Y6A5 838 aa20.54■□□□□ 0.88
VPS29-204ENST00000548259 IGHA2P01877 340 aa20.53■□□□□ 0.88
VPS29-204ENST00000548259 SHMT1P34896 483 aa20.53■□□□□ 0.88
VPS29-204ENST00000548259 SEPT2Q15019 361 aa20.53■□□□□ 0.88
VPS29-204ENST00000548259 C9orf50Q5SZB4 431 aa20.53■□□□□ 0.88
VPS29-204ENST00000548259 ANO1Q5XXA6 986 aa20.53■□□□□ 0.88
VPS29-204ENST00000548259 NCAPG2Q86XI2 1143 aa20.53■□□□□ 0.88
VPS29-204ENST00000548259 CRNKL1Q9BZJ0 848 aaKnown RBP20.53■□□□□ 0.88
VPS29-204ENST00000548259 CCDC8Q9H0W5 538 aaPredicted RBP20.53■□□□□ 0.88
VPS29-204ENST00000548259 PDLIM7Q9NR12 457 aa20.53■□□□□ 0.88
VPS29-204ENST00000548259 NRBP1Q9UHY1 535 aa20.53■□□□□ 0.88
VPS29-204ENST00000548259 MAGEB6P1A0A0J9YX57 407 aa20.52■□□□□ 0.88
VPS29-204ENST00000548259 RARBP10826 455 aa20.52■□□□□ 0.88
VPS29-204ENST00000548259 FCER1AP12319 257 aa20.52■□□□□ 0.88
VPS29-204ENST00000548259 LRRC41Q15345 812 aa20.52■□□□□ 0.88
VPS29-204ENST00000548259 RNF180Q86T96 592 aa20.52■□□□□ 0.88
VPS29-204ENST00000548259 MYLIPQ8WY64 445 aa20.52■□□□□ 0.88
VPS29-204ENST00000548259 ARHGEF10LQ9HCE6 1279 aa20.52■□□□□ 0.88
VPS29-204ENST00000548259 NOP58Q9Y2X3 529 aaKnown RBP20.52■□□□□ 0.88
VPS29-204ENST00000548259 BCAR3O75815 825 aa20.51■□□□□ 0.87
VPS29-204ENST00000548259 PLCD1P51178 756 aa20.51■□□□□ 0.87
VPS29-204ENST00000548259 TTF1Q15361 905 aaPredicted RBP20.51■□□□□ 0.87
VPS29-204ENST00000548259 ZKSCAN2Q63HK3 967 aa20.51■□□□□ 0.87
VPS29-204ENST00000548259 TMEM179Q6ZVK1 233 aa20.51■□□□□ 0.87
VPS29-204ENST00000548259 FERMT2Q96AC1 680 aa20.51■□□□□ 0.87
VPS29-204ENST00000548259 RNPC3Q96LT9 517 aaKnown RBP20.51■□□□□ 0.87
VPS29-204ENST00000548259 XPNPEP3Q9NQH7 507 aa20.51■□□□□ 0.87
VPS29-204ENST00000548259 PRDM6Q9NQX0 595 aa20.51■□□□□ 0.87
VPS29-204ENST00000548259 MCM9Q9NXL9 1143 aa20.51■□□□□ 0.87
VPS29-204ENST00000548259 FOCADQ5VW36 1801 aa20.5■□□□□ 0.87
VPS29-204ENST00000548259 FLOT1O75955 427 aa20.5■□□□□ 0.87
VPS29-204ENST00000548259 SLC25A27O95847 323 aa20.5■□□□□ 0.87
VPS29-204ENST00000548259 TLE2Q04725 743 aa20.5■□□□□ 0.87
VPS29-204ENST00000548259 ERC1Q8IUD2 1116 aa20.5■□□□□ 0.87
VPS29-204ENST00000548259 TMEM57Q8N5G2 664 aa20.5■□□□□ 0.87
VPS29-204ENST00000548259 MAML3Q96JK9 1138 aa20.5■□□□□ 0.87
VPS29-204ENST00000548259 SWAP70Q9UH65 585 aa20.5■□□□□ 0.87
VPS29-204ENST00000548259 COBLO75128 1261 aa20.49■□□□□ 0.87
VPS29-204ENST00000548259 CLTBP09497 229 aa20.49■□□□□ 0.87
VPS29-204ENST00000548259 RAG1P15918 1043 aa20.49■□□□□ 0.87
VPS29-204ENST00000548259 DSG3P32926 999 aa20.49■□□□□ 0.87
VPS29-204ENST00000548259 GUCY1A2P33402 732 aa20.49■□□□□ 0.87
VPS29-204ENST00000548259 GABPAQ06546 454 aa20.49■□□□□ 0.87
VPS29-204ENST00000548259 EAF2Q96CJ1 260 aaPredicted RBP20.49■□□□□ 0.87
VPS29-204ENST00000548259 TLR7Q9NYK1 1049 aaKnown RBP20.49■□□□□ 0.87
VPS29-204ENST00000548259 PHF24Q9UPV7 400 aa20.49■□□□□ 0.87
VPS29-204ENST00000548259 FRMPD3Q5JV73 1810 aa20.48■□□□□ 0.87
VPS29-204ENST00000548259 TRIM43BA6NCK2 446 aa20.48■□□□□ 0.87
VPS29-204ENST00000548259 FAM47AQ5JRC9 791 aa20.48■□□□□ 0.87
VPS29-204ENST00000548259 PRAMEF19Q5SWL8 479 aa20.48■□□□□ 0.87
VPS29-204ENST00000548259 FTSJ3Q8IY81 847 aaKnown RBP20.48■□□□□ 0.87
VPS29-204ENST00000548259 TRIM43Q96BQ3 446 aaPredicted RBP20.48■□□□□ 0.87
VPS29-204ENST00000548259 RIOK1Q9BRS2 568 aaKnown RBP20.48■□□□□ 0.87
VPS29-204ENST00000548259 TTYH1Q9H313 450 aaPredicted RBP20.48■□□□□ 0.87
VPS29-204ENST00000548259 A0A1W2PRG0 241 aa20.47■□□□□ 0.87
VPS29-204ENST00000548259 FPGSQ05932 587 aa20.47■□□□□ 0.87
VPS29-204ENST00000548259 KCTD2Q14681 263 aa20.47■□□□□ 0.87
VPS29-204ENST00000548259 SH3RF1Q7Z6J0 888 aa20.47■□□□□ 0.87
VPS29-204ENST00000548259 AMOTL1Q8IY63 956 aa20.47■□□□□ 0.87
VPS29-204ENST00000548259 MMP19Q99542 508 aa20.47■□□□□ 0.87
VPS29-204ENST00000548259 ZNF236Q9UL36 1845 aa20.46■□□□□ 0.87
VPS29-204ENST00000548259 VCANP13611 3396 aa20.46■□□□□ 0.87
VPS29-204ENST00000548259 COPB2P35606 906 aa20.46■□□□□ 0.87
VPS29-204ENST00000548259 SLC9C2Q5TAH2 1124 aa20.46■□□□□ 0.87
VPS29-204ENST00000548259 CCDC174Q6PII3 467 aa20.46■□□□□ 0.87
VPS29-204ENST00000548259 SAMD1Q6SPF0 538 aaPredicted RBP20.46■□□□□ 0.87
VPS29-204ENST00000548259 AACSQ86V21 672 aa20.46■□□□□ 0.87
VPS29-204ENST00000548259 ANTXR1Q9H6X2 564 aa20.46■□□□□ 0.87
VPS29-204ENST00000548259 TMEM39AQ9NV64 488 aa20.46■□□□□ 0.87
VPS29-204ENST00000548259 TNNQ9UQP3 1299 aa20.46■□□□□ 0.87
VPS29-204ENST00000548259 CNPY2Q9Y2B0 182 aa20.46■□□□□ 0.87
VPS29-204ENST00000548259 CDK5RAP2Q96SN8 1893 aa20.45■□□□□ 0.86
VPS29-204ENST00000548259 MYH1P12882 1939 aa20.45■□□□□ 0.86
VPS29-204ENST00000548259 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.45■□□□□ 0.86
VPS29-204ENST00000548259 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.45■□□□□ 0.86
VPS29-204ENST00000548259 DCDC2CA8MYV0 355 aa20.45■□□□□ 0.86
VPS29-204ENST00000548259 KIAA0355O15063 1070 aa20.45■□□□□ 0.86
VPS29-204ENST00000548259 WDR46O15213 610 aaKnown RBP20.45■□□□□ 0.86
VPS29-204ENST00000548259 PQBP1O60828 265 aaKnown RBP20.45■□□□□ 0.86
VPS29-204ENST00000548259 ICA1Q05084 483 aa20.45■□□□□ 0.86
VPS29-204ENST00000548259 HSP90AB4PQ58FF6 505 aa20.45■□□□□ 0.86
VPS29-204ENST00000548259 NUP133Q8WUM0 1156 aa20.45■□□□□ 0.86
VPS29-204ENST00000548259 ATG4CQ96DT6 458 aa20.45■□□□□ 0.86
VPS29-204ENST00000548259 CCDC17Q96LX7 622 aa20.45■□□□□ 0.86
VPS29-204ENST00000548259 C1orf115Q9H7X2 142 aa20.45■□□□□ 0.86
VPS29-204ENST00000548259 VCPKMTQ9H867 229 aa20.45■□□□□ 0.86
VPS29-204ENST00000548259 DIS3Q9Y2L1 958 aaKnown RBP20.45■□□□□ 0.86
VPS29-204ENST00000548259 TMX2Q9Y320 296 aa20.45■□□□□ 0.86
VPS29-204ENST00000548259 LTBP2Q14767 1821 aa20.44■□□□□ 0.86
VPS29-204ENST00000548259 AKR1A1P14550 325 aa20.44■□□□□ 0.86
VPS29-204ENST00000548259 ITPRIPQ8IWB1 547 aa20.44■□□□□ 0.86
VPS29-204ENST00000548259 SPICE1Q8N0Z3 855 aa20.44■□□□□ 0.86
VPS29-204ENST00000548259 DDRGK1Q96HY6 314 aa20.44■□□□□ 0.86
VPS29-204ENST00000548259 TINF2Q9BSI4 451 aa20.44■□□□□ 0.86
VPS29-204ENST00000548259 PDE6AP16499 860 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms