RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 SCAND2PQ9GZW5 306 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-203ENST00000547825 CNTNAP4Q9C0A0 1308 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 LAMA4Q16363 1823 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 KIF20AO95235 890 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 AK2P54819 239 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 BMS1Q14692 1282 aaKnown RBP6.32□□□□□ -1.4
LIMA1-203ENST00000547825 TAF7Q15545 349 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-203ENST00000547825 ELF2Q15723 593 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 ARHGAP29Q52LW3 1261 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 SYT10Q6XYQ8 523 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 ETFBKMTQ8IXQ9 262 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 FSIP1Q8NA03 581 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 RUFY1Q96T51 708 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 ACBD3Q9H3P7 528 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 ARHGEF10LQ9HCE6 1279 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 STIM2Q9P246 746 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 CFAP45Q9UL16 551 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 PYCARDQ9ULZ3 195 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 TAF1P21675 1872 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 PALLDQ8WX93 1383 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 PNMA6EA0A0J9YXQ4 647 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 LILRA1O75019 489 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 CLSTN1O94985 981 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 ST3GAL1Q11201 340 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 AMOTQ4VCS5 1084 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 AKAP4Q5JQC9 854 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 DEF6Q9H4E7 631 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 SCHIP1Q9P0W5 487 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-203ENST00000547825 F13A1P00488 732 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 LIG1P18858 919 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 GNG11P61952 73 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 AKAP17AQ02040 695 aaKnown RBP6.31□□□□□ -1.4
LIMA1-203ENST00000547825 MTHFSDQ2M296 383 aaKnown RBP6.31□□□□□ -1.4
LIMA1-203ENST00000547825 C1orf141Q5JVX7 400 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 VTI1AQ96AJ9 217 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 ZSCAN31Q96LW9 406 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-203ENST00000547825 ZNF396Q96N95 335 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-203ENST00000547825 OGFRQ9NZT2 677 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 POLIQ9UNA4 740 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 PCDHGB7Q9Y5F8 929 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 SPEF2Q9C093 1822 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 MYL6BP14649 208 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 TXNRD1Q16881 649 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 RRP12Q5JTH9 1297 aaKnown RBP6.31□□□□□ -1.4
LIMA1-203ENST00000547825 ANKRD44Q8N8A2 993 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 KLRG1Q96E93 195 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 DCAF5Q96JK2 942 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 CFHR5Q9BXR6 569 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 PAXBP1Q9Y5B6 917 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 CCDC69A6NI79 296 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 LARGE1O95461 756 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 ORC1Q13415 861 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 KIF4BQ2VIQ3 1234 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 PPP1R42Q7Z4L9 355 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 CCAR1Q8IX12 1150 aaKnown RBP6.31□□□□□ -1.4
LIMA1-203ENST00000547825 IL17REQ8NFR9 667 aa6.31□□□□□ -1.4
LIMA1-203ENST00000547825 DHX38Q92620 1227 aaKnown RBP6.31□□□□□ -1.4
LIMA1-203ENST00000547825 A0A087WWV3 80 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 PLCB3Q01970 1234 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 PPARDQ03181 441 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 ITPK1Q13572 414 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 COL19A1Q14993 1142 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 ATP2B3Q16720 1220 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 RC3H1Q5TC82 1133 aaKnown RBP6.3□□□□□ -1.4
LIMA1-203ENST00000547825 CCDC70Q6NSX1 233 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 AOPEPQ8N6M6 819 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 ARHGAP45Q92619 1136 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 FAM129BQ96TA1 746 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 TINF2Q9BSI4 451 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 PDGFDQ9GZP0 370 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-203ENST00000547825 ANO10Q9NW15 660 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 KLK14Q9P0G3 267 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 RSPH14Q9UHP6 348 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 NRBP1Q9UHY1 535 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 FOXK2Q01167 660 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 LINC00116Q8NCU8 138 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 KRTAP3-3Q9BYR6 98 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 KRTAP3-2Q9BYR7 98 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 NLRP2Q9NX02 1062 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 VTI1BQ9UEU0 232 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 PNMA6FA0A0J9YX94 578 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 SORBS3O60504 671 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 SLU7O95391 586 aaKnown RBP6.3□□□□□ -1.4
LIMA1-203ENST00000547825 NR3C2P08235 984 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 DNA2P51530 1060 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 KIF1BPQ96EK5 621 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 RABEP2Q9H5N1 569 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 IL21Q9HBE4 155 aa6.3□□□□□ -1.4
LIMA1-203ENST00000547825 A6NJY4 79 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 RNMTO43148 476 aaKnown RBP6.29□□□□□ -1.4
LIMA1-203ENST00000547825 GLRX3O76003 335 aaKnown RBP6.29□□□□□ -1.4
LIMA1-203ENST00000547825 TOP1P11387 765 aaKnown RBP6.29□□□□□ -1.4
LIMA1-203ENST00000547825 TERF1P54274 439 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 DMTNQ08495 405 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 ANKRD1Q15327 319 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 SLC15A2Q16348 729 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 ZNF394Q53GI3 561 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 INTS5Q6P9B9 1019 aaKnown RBP6.29□□□□□ -1.4
LIMA1-203ENST00000547825 PPFIBP1Q86W92 1011 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 IFNL2Q8IZJ0 200 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms