RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 LDHBP07195 334 aaKnown RBP14.26□□□□□ -0.13
RNF4-222ENST00000541204 CDK11BP21127 795 aaKnown RBP14.26□□□□□ -0.13
RNF4-222ENST00000541204 USP5P45974 858 aa14.26□□□□□ -0.13
RNF4-222ENST00000541204 FBXO2Q9UK22 296 aaPredicted RBP14.26□□□□□ -0.13
RNF4-222ENST00000541204 MYO1BO43795 1136 aa14.26□□□□□ -0.13
RNF4-222ENST00000541204 TRIM37O94972 964 aa14.26□□□□□ -0.13
RNF4-222ENST00000541204 PNMA6AP0CW24 399 aaPredicted RBP14.26□□□□□ -0.13
RNF4-222ENST00000541204 TBX2Q13207 712 aaPredicted RBP14.26□□□□□ -0.13
RNF4-222ENST00000541204 FCHSD1Q86WN1 690 aa14.26□□□□□ -0.13
RNF4-222ENST00000541204 SH3RF3Q8TEJ3 882 aaPredicted RBP14.26□□□□□ -0.13
RNF4-222ENST00000541204 EPC1Q9H2F5 836 aa14.26□□□□□ -0.13
RNF4-222ENST00000541204 HOOK1Q9UJC3 728 aaKnown RBP14.26□□□□□ -0.13
RNF4-222ENST00000541204 TADA3O75528 432 aa14.25□□□□□ -0.13
RNF4-222ENST00000541204 GPSM2P81274 684 aa14.25□□□□□ -0.13
RNF4-222ENST00000541204 TOGARAM2Q6ZUX3 1019 aa14.25□□□□□ -0.13
RNF4-222ENST00000541204 TC2NQ8N9U0 490 aa14.25□□□□□ -0.13
RNF4-222ENST00000541204 WDR24Q96S15 920 aa14.25□□□□□ -0.13
RNF4-222ENST00000541204 SAP30BPQ9UHR5 308 aaKnown RBP14.25□□□□□ -0.13
RNF4-222ENST00000541204 UFL1O94874 794 aa14.25□□□□□ -0.13
RNF4-222ENST00000541204 PTPREP23469 700 aa14.25□□□□□ -0.13
RNF4-222ENST00000541204 TROAPQ12815 778 aa14.25□□□□□ -0.13
RNF4-222ENST00000541204 NOM1Q5C9Z4 860 aaKnown RBP14.25□□□□□ -0.13
RNF4-222ENST00000541204 EARS2Q5JPH6 523 aaKnown RBP14.25□□□□□ -0.13
RNF4-222ENST00000541204 GNG11P61952 73 aa14.24□□□□□ -0.13
RNF4-222ENST00000541204 PKN1Q16512 942 aa14.24□□□□□ -0.13
RNF4-222ENST00000541204 SPECC1LQ69YQ0 1117 aa14.24□□□□□ -0.13
RNF4-222ENST00000541204 TMCO3Q6UWJ1 677 aa14.24□□□□□ -0.13
RNF4-222ENST00000541204 SMARCE1Q969G3 411 aa14.24□□□□□ -0.13
RNF4-222ENST00000541204 SRRTQ9BXP5 876 aaKnown RBP14.24□□□□□ -0.13
RNF4-222ENST00000541204 SAMSN1Q9NSI8 373 aaKnown RBP14.24□□□□□ -0.13
RNF4-222ENST00000541204 TNRC6CQ9HCJ0 1690 aaKnown RBP14.24□□□□□ -0.13
RNF4-222ENST00000541204 CASZ1Q86V15 1759 aa14.24□□□□□ -0.13
RNF4-222ENST00000541204 MYH2Q9UKX2 1941 aa14.24□□□□□ -0.13
RNF4-222ENST00000541204 EFCAB8A8MWE9 144 aa14.24□□□□□ -0.13
RNF4-222ENST00000541204 RGL2O15211 777 aa14.24□□□□□ -0.13
RNF4-222ENST00000541204 SERPINB2P05120 415 aa14.24□□□□□ -0.13
RNF4-222ENST00000541204 GYS1P13807 737 aa14.24□□□□□ -0.13
RNF4-222ENST00000541204 ZNF18P17022 549 aa14.24□□□□□ -0.13
RNF4-222ENST00000541204 USP49Q70CQ1 688 aa14.24□□□□□ -0.13
RNF4-222ENST00000541204 SLC44A5Q8NCS7 719 aa14.24□□□□□ -0.13
RNF4-222ENST00000541204 TGFBRAP1Q8WUH2 860 aa14.24□□□□□ -0.13
RNF4-222ENST00000541204 MED15Q96RN5 788 aa14.24□□□□□ -0.13
RNF4-222ENST00000541204 ATP8A2Q9NTI2 1148 aa14.24□□□□□ -0.13
RNF4-222ENST00000541204 ARGLU1Q9NWB6 273 aaPredicted RBP14.24□□□□□ -0.13
RNF4-222ENST00000541204 BAZ2BQ9UIF8 2168 aaKnown RBP14.23□□□□□ -0.13
RNF4-222ENST00000541204 SEC31AO94979 1220 aaKnown RBP14.23□□□□□ -0.13
RNF4-222ENST00000541204 ZRANB2O95218 330 aaKnown RBP eCLIP14.23□□□□□ -0.13
RNF4-222ENST00000541204 VEGFAP15692 232 aaPredicted RBP14.23□□□□□ -0.13
RNF4-222ENST00000541204 CASQ1P31415 396 aa14.23□□□□□ -0.13
RNF4-222ENST00000541204 PLA2G4AP47712 749 aa14.23□□□□□ -0.13
RNF4-222ENST00000541204 SARSP49591 514 aaKnown RBP14.23□□□□□ -0.13
RNF4-222ENST00000541204 MORC3Q14149 939 aa14.23□□□□□ -0.13
RNF4-222ENST00000541204 RILPL1Q5EBL4 403 aa14.23□□□□□ -0.13
RNF4-222ENST00000541204 NT5DC1Q5TFE4 455 aa14.23□□□□□ -0.13
RNF4-222ENST00000541204 ELOA2Q8IYF1 753 aaPredicted RBP14.23□□□□□ -0.13
RNF4-222ENST00000541204 NOL10Q9BSC4 688 aaKnown RBP14.23□□□□□ -0.13
RNF4-222ENST00000541204 RNF26Q9BY78 433 aaPredicted RBP14.23□□□□□ -0.13
RNF4-222ENST00000541204 FOXP1Q9H334 677 aaPredicted RBP14.23□□□□□ -0.13
RNF4-222ENST00000541204 QTRT2Q9H974 415 aaKnown RBP14.23□□□□□ -0.13
RNF4-222ENST00000541204 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.23□□□□□ -0.13
RNF4-222ENST00000541204 XDHP47989 1333 aa14.23□□□□□ -0.13
RNF4-222ENST00000541204 A0A1B0GUL6 1792 aa14.23□□□□□ -0.13
RNF4-222ENST00000541204 MYH13Q9UKX3 1938 aa14.23□□□□□ -0.13
RNF4-222ENST00000541204 ERICH4A6NGS2 130 aa14.23□□□□□ -0.13
RNF4-222ENST00000541204 STX10O60499 249 aa14.23□□□□□ -0.13
RNF4-222ENST00000541204 TFAP4Q01664 338 aa14.23□□□□□ -0.13
RNF4-222ENST00000541204 MAPKAPK5Q8IW41 473 aa14.23□□□□□ -0.13
RNF4-222ENST00000541204 SRBD1Q8N5C6 995 aaKnown RBP14.23□□□□□ -0.13
RNF4-222ENST00000541204 MLKLQ8NB16 471 aa14.23□□□□□ -0.13
RNF4-222ENST00000541204 ENOX1Q8TC92 643 aaKnown RBP14.23□□□□□ -0.13
RNF4-222ENST00000541204 DESI2Q9BSY9 194 aa14.23□□□□□ -0.13
RNF4-222ENST00000541204 IRS2Q9Y4H2 1338 aa14.23□□□□□ -0.13
RNF4-222ENST00000541204 NID2Q14112 1375 aa14.23□□□□□ -0.13
RNF4-222ENST00000541204 FUT2Q10981 343 aa14.22□□□□□ -0.13
RNF4-222ENST00000541204 SPTY2D1Q68D10 685 aaPredicted RBP14.22□□□□□ -0.13
RNF4-222ENST00000541204 ZNF804AQ7Z570 1209 aa14.22□□□□□ -0.13
RNF4-222ENST00000541204 CTCFLQ8NI51 663 aaPredicted RBP14.22□□□□□ -0.13
RNF4-222ENST00000541204 MTA3Q9BTC8 594 aa14.22□□□□□ -0.13
RNF4-222ENST00000541204 ARPP21Q9UBL0 812 aaPredicted RBP14.22□□□□□ -0.13
RNF4-222ENST00000541204 TRPC5Q9UL62 973 aaPredicted RBP14.22□□□□□ -0.13
RNF4-222ENST00000541204 DUOX1Q9NRD9 1551 aa14.22□□□□□ -0.13
RNF4-222ENST00000541204 ZNF831Q5JPB2 1677 aa14.22□□□□□ -0.13
RNF4-222ENST00000541204 WNT7AO00755 349 aa14.22□□□□□ -0.13
RNF4-222ENST00000541204 WDR66Q8TBY9 1149 aa14.22□□□□□ -0.13
RNF4-222ENST00000541204 CSRNP2Q9H175 543 aa14.22□□□□□ -0.13
RNF4-222ENST00000541204 DACH1Q9UI36 760 aa14.22□□□□□ -0.13
RNF4-222ENST00000541204 LEMD3Q9Y2U8 911 aa14.22□□□□□ -0.13
RNF4-222ENST00000541204 NHSQ6T4R5 1651 aa14.22□□□□□ -0.13
RNF4-222ENST00000541204 USP17L3A6NCW0 530 aa14.22□□□□□ -0.13
RNF4-222ENST00000541204 USP17L4A6NCW7 530 aa14.22□□□□□ -0.13
RNF4-222ENST00000541204 ACTN4O43707 911 aaKnown RBP14.22□□□□□ -0.13
RNF4-222ENST00000541204 XBP1P17861 261 aa14.22□□□□□ -0.13
RNF4-222ENST00000541204 ST5P78524 1137 aa14.22□□□□□ -0.13
RNF4-222ENST00000541204 MAP3K9P80192 1104 aa14.22□□□□□ -0.13
RNF4-222ENST00000541204 USP17L1Q7RTZ2 530 aa14.22□□□□□ -0.13
RNF4-222ENST00000541204 MKNK2Q9HBH9 465 aa14.22□□□□□ -0.13
RNF4-222ENST00000541204 THSD7AQ9UPZ6 1657 aa14.21□□□□□ -0.13
RNF4-222ENST00000541204 FGRP09769 529 aa14.21□□□□□ -0.13
RNF4-222ENST00000541204 MTF1Q14872 753 aa14.21□□□□□ -0.13
RNF4-222ENST00000541204 KARSQ15046 597 aaKnown RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms