RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 CCDC24Q8N4L8 307 aa14.31□□□□□ -0.12
SFSWAP-208ENST00000539506 CDC5LQ99459 802 aaKnown RBP14.31□□□□□ -0.12
SFSWAP-208ENST00000539506 A0A1B0GUL6 1792 aa14.31□□□□□ -0.12
SFSWAP-208ENST00000539506 SPATA31A5Q5VU36 1347 aa14.31□□□□□ -0.12
SFSWAP-208ENST00000539506 SPATA31A7Q8IWB4 1347 aa14.31□□□□□ -0.12
SFSWAP-208ENST00000539506 NRAPQ86VF7 1730 aa14.31□□□□□ -0.12
SFSWAP-208ENST00000539506 VEGFAP15692 232 aaPredicted RBP14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 NPY5RQ15761 445 aa14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 NT5DC1Q5TFE4 455 aa14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 TBC1D9BQ66K14 1250 aa14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 FOXR1Q6PIV2 292 aa14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 ESR2Q92731 530 aa14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 GDAP1L1Q96MZ0 367 aa14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 MTA3Q9BTC8 594 aa14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 CDCA7Q9BWT1 371 aaPredicted RBP14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 THRAP3Q9Y2W1 955 aaKnown RBP14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 NFE2L3Q9Y4A8 694 aa14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 SRPRBQ9Y5M8 271 aaKnown RBP14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 TEX33O43247 280 aa14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 TROAPQ12815 778 aa14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 PAXIP1Q6ZW49 1069 aaPredicted RBP14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 VSTM4Q8IW00 320 aa14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 EPSTI1Q96J88 318 aa14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 VPS18Q9P253 973 aa14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 V9GY48 417 aaPredicted RBP14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 AHDC1Q5TGY3 1603 aaPredicted RBP14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 DUOX1Q9NRD9 1551 aa14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 UBE4AQ14139 1066 aa14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 PHF20Q9BVI0 1012 aa14.3□□□□□ -0.12
SFSWAP-208ENST00000539506 CCDC196A0A1B0GTZ2 297 aa14.29□□□□□ -0.12
SFSWAP-208ENST00000539506 AFMP43652 599 aa14.29□□□□□ -0.12
SFSWAP-208ENST00000539506 TNNT3P45378 269 aaPredicted RBP14.29□□□□□ -0.12
SFSWAP-208ENST00000539506 RCAN1P53805 252 aa14.29□□□□□ -0.12
SFSWAP-208ENST00000539506 MORC3Q14149 939 aa14.29□□□□□ -0.12
SFSWAP-208ENST00000539506 TMEM139Q8IV31 216 aa14.29□□□□□ -0.12
SFSWAP-208ENST00000539506 RNF26Q9BY78 433 aaPredicted RBP14.29□□□□□ -0.12
SFSWAP-208ENST00000539506 PDE11AQ9HCR9 933 aa14.29□□□□□ -0.12
SFSWAP-208ENST00000539506 NUTM2BA6NNL0 878 aaPredicted RBP14.29□□□□□ -0.12
SFSWAP-208ENST00000539506 NUTM2EB1AL46 878 aaPredicted RBP14.29□□□□□ -0.12
SFSWAP-208ENST00000539506 USP17L12C9JPN9 530 aa14.29□□□□□ -0.12
SFSWAP-208ENST00000539506 USP17L21D6R901 530 aa14.29□□□□□ -0.12
SFSWAP-208ENST00000539506 FGRP09769 529 aa14.29□□□□□ -0.12
SFSWAP-208ENST00000539506 ZSCAN26Q16670 478 aa14.29□□□□□ -0.12
SFSWAP-208ENST00000539506 NUTM2AQ8IVF1 878 aaPredicted RBP14.29□□□□□ -0.12
SFSWAP-208ENST00000539506 ELOA2Q8IYF1 753 aaPredicted RBP14.29□□□□□ -0.12
SFSWAP-208ENST00000539506 NSUN4Q96CB9 384 aaKnown RBP14.29□□□□□ -0.12
SFSWAP-208ENST00000539506 ARFGAP3Q9NP61 516 aa14.29□□□□□ -0.12
SFSWAP-208ENST00000539506 FEZ2Q9UHY8 353 aaPredicted RBP14.29□□□□□ -0.12
SFSWAP-208ENST00000539506 CASZ1Q86V15 1759 aa14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 ZNF18P17022 549 aa14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 CLEC4GQ6UXB4 293 aa14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 AMIGO3Q86WK7 504 aa14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 ZNF579Q8NAF0 562 aaKnown RBP14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 TFCP2L1Q9NZI6 479 aa14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 JAG2Q9Y219 1238 aa14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 CYP2D6P10635 497 aa14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 MECOMQ03112 1051 aa14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 FBXO33Q7Z6M2 555 aa14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 TXNRD3Q86VQ6 643 aa14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 SPATA20Q8TB22 786 aa14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 BRIP1Q9BX63 1249 aa14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 RABEP2Q9H5N1 569 aa14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 COL5A3P25940 1745 aaPredicted RBP14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 EFCAB8A8MWE9 144 aa14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 FAM47AQ5JRC9 791 aa14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 IFIT1BQ5T764 474 aaKnown RBP14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 TNFRSF25Q93038 417 aa14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 SRP68Q9UHB9 627 aaKnown RBP14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 ADAM21Q9UKJ8 722 aa14.28□□□□□ -0.12
SFSWAP-208ENST00000539506 PRDX5P30044 214 aa14.27□□□□□ -0.12
SFSWAP-208ENST00000539506 SRBD1Q8N5C6 995 aaKnown RBP14.27□□□□□ -0.12
SFSWAP-208ENST00000539506 TC2NQ8N9U0 490 aa14.27□□□□□ -0.12
SFSWAP-208ENST00000539506 GNL3LQ9NVN8 582 aaKnown RBP14.27□□□□□ -0.12
SFSWAP-208ENST00000539506 AATFQ9NY61 560 aaKnown RBP eCLIP14.27□□□□□ -0.12
SFSWAP-208ENST00000539506 TFR2Q9UP52 801 aa14.27□□□□□ -0.12
SFSWAP-208ENST00000539506 ZNF652Q9Y2D9 606 aa14.27□□□□□ -0.12
SFSWAP-208ENST00000539506 PHLPP2Q6ZVD8 1323 aa14.27□□□□□ -0.12
SFSWAP-208ENST00000539506 SCN7AQ01118 1682 aa14.27□□□□□ -0.12
SFSWAP-208ENST00000539506 ZSCAN12O43309 604 aa14.27□□□□□ -0.13
SFSWAP-208ENST00000539506 PRPF3O43395 683 aaKnown RBP14.27□□□□□ -0.13
SFSWAP-208ENST00000539506 CDC25AP30304 524 aa14.27□□□□□ -0.13
SFSWAP-208ENST00000539506 KCNJ6P48051 423 aa14.27□□□□□ -0.13
SFSWAP-208ENST00000539506 TBX2Q13207 712 aaPredicted RBP14.27□□□□□ -0.13
SFSWAP-208ENST00000539506 LONRF2Q1L5Z9 754 aa14.27□□□□□ -0.13
SFSWAP-208ENST00000539506 SLC4A8Q2Y0W8 1093 aa14.27□□□□□ -0.13
SFSWAP-208ENST00000539506 CAVIN4Q5BKX8 364 aa14.27□□□□□ -0.13
SFSWAP-208ENST00000539506 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.27□□□□□ -0.13
SFSWAP-208ENST00000539506 BAZ2BQ9UIF8 2168 aaKnown RBP14.27□□□□□ -0.13
SFSWAP-208ENST00000539506 CD44P16070 742 aaKnown RBP14.26□□□□□ -0.13
SFSWAP-208ENST00000539506 GPIHBP1Q8IV16 184 aa14.26□□□□□ -0.13
SFSWAP-208ENST00000539506 MYH6P13533 1939 aa14.26□□□□□ -0.13
SFSWAP-208ENST00000539506 ZNF569Q5MCW4 686 aa14.26□□□□□ -0.13
SFSWAP-208ENST00000539506 FUT8Q9BYC5 575 aa14.26□□□□□ -0.13
SFSWAP-208ENST00000539506 DCP1AQ9NPI6 582 aaPredicted RBP14.26□□□□□ -0.13
SFSWAP-208ENST00000539506 RSPH14Q9UHP6 348 aa14.26□□□□□ -0.13
SFSWAP-208ENST00000539506 MAP3K9P80192 1104 aa14.26□□□□□ -0.13
SFSWAP-208ENST00000539506 ZNF174Q15697 407 aa14.26□□□□□ -0.13
SFSWAP-208ENST00000539506 PNKPQ96T60 521 aa14.26□□□□□ -0.13
SFSWAP-208ENST00000539506 MYH13Q9UKX3 1938 aa14.25□□□□□ -0.13
SFSWAP-208ENST00000539506 CBFA2T2O43439 604 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 137.8 ms