RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 ERVFC1P60507 584 aa7.27□□□□□ -1.25
SMC4-224ENST00000494612 MCATQ8IVS2 390 aaKnown RBP7.27□□□□□ -1.25
SMC4-224ENST00000494612 SP110Q9HB58 689 aa7.27□□□□□ -1.25
SMC4-224ENST00000494612 CEP131Q9UPN4 1083 aa7.27□□□□□ -1.25
SMC4-224ENST00000494612 HPXP02790 462 aa7.26□□□□□ -1.25
SMC4-224ENST00000494612 SRFP11831 508 aa7.26□□□□□ -1.25
SMC4-224ENST00000494612 TFE3P19532 575 aaPredicted RBP7.26□□□□□ -1.25
SMC4-224ENST00000494612 ETV3P41162 512 aa7.26□□□□□ -1.25
SMC4-224ENST00000494612 PPP1R13LQ8WUF5 828 aa7.26□□□□□ -1.25
SMC4-224ENST00000494612 ADAMTS10Q9H324 1103 aa7.26□□□□□ -1.25
SMC4-224ENST00000494612 TMEM59LQ9UK28 342 aa7.26□□□□□ -1.25
SMC4-224ENST00000494612 SYN1P17600 705 aa7.25□□□□□ -1.25
SMC4-224ENST00000494612 BMP7P18075 431 aa7.25□□□□□ -1.25
SMC4-224ENST00000494612 VAMP1P23763 118 aa7.25□□□□□ -1.25
SMC4-224ENST00000494612 MYLIPQ8WY64 445 aa7.25□□□□□ -1.25
SMC4-224ENST00000494612 ACSF2Q96CM8 615 aaPredicted RBP7.25□□□□□ -1.25
SMC4-224ENST00000494612 MIR1-1HGQ9H1L0 117 aa7.25□□□□□ -1.25
SMC4-224ENST00000494612 ADAM30Q9UKF2 790 aa7.25□□□□□ -1.25
SMC4-224ENST00000494612 TCF3P15923 654 aa7.24□□□□□ -1.25
SMC4-224ENST00000494612 HK2P52789 917 aa7.24□□□□□ -1.25
SMC4-224ENST00000494612 RPL6Q02878 288 aaKnown RBP7.24□□□□□ -1.25
SMC4-224ENST00000494612 MAP3K11Q16584 847 aa7.24□□□□□ -1.25
SMC4-224ENST00000494612 CREG2Q8IUH2 290 aa7.24□□□□□ -1.25
SMC4-224ENST00000494612 GPR62Q9BZJ7 368 aa7.24□□□□□ -1.25
SMC4-224ENST00000494612 F6X3S4 739 aa7.23□□□□□ -1.25
SMC4-224ENST00000494612 LMNB1P20700 586 aa7.23□□□□□ -1.25
SMC4-224ENST00000494612 TPP2P29144 1249 aaPredicted RBP7.23□□□□□ -1.25
SMC4-224ENST00000494612 PDE4BQ07343 736 aa7.23□□□□□ -1.25
SMC4-224ENST00000494612 CRELD1Q96HD1 420 aa7.23□□□□□ -1.25
SMC4-224ENST00000494612 SCAMP3O14828 347 aaKnown RBP7.22□□□□□ -1.25
SMC4-224ENST00000494612 ITGAEP38570 1179 aa7.22□□□□□ -1.25
SMC4-224ENST00000494612 HDLBPQ00341 1268 aaKnown RBP7.22□□□□□ -1.25
SMC4-224ENST00000494612 TAF1CQ15572 869 aaPredicted RBP7.22□□□□□ -1.25
SMC4-224ENST00000494612 TRIT1Q9H3H1 467 aaKnown RBP7.22□□□□□ -1.25
SMC4-224ENST00000494612 TRHRP34981 398 aaPredicted RBP7.21□□□□□ -1.26
SMC4-224ENST00000494612 ZNF76P36508 570 aa7.21□□□□□ -1.26
SMC4-224ENST00000494612 NFIXQ14938 502 aa7.21□□□□□ -1.26
SMC4-224ENST00000494612 TSPYL5Q86VY4 417 aaPredicted RBP7.21□□□□□ -1.26
SMC4-224ENST00000494612 DTWD2Q8NBA8 298 aa7.21□□□□□ -1.26
SMC4-224ENST00000494612 TLR6Q9Y2C9 796 aa7.21□□□□□ -1.26
SMC4-224ENST00000494612 CORINQ9Y5Q5 1042 aa7.21□□□□□ -1.26
SMC4-224ENST00000494612 A0A0G2JLL6 359 aaPredicted RBP7.2□□□□□ -1.26
SMC4-224ENST00000494612 UPK3BL1B0FP48 263 aa7.2□□□□□ -1.26
SMC4-224ENST00000494612 UPK3BL2E5RIL1 263 aa7.2□□□□□ -1.26
SMC4-224ENST00000494612 ZGLP1P0C6A0 271 aa7.2□□□□□ -1.26
SMC4-224ENST00000494612 RLBP1P12271 317 aa7.2□□□□□ -1.26
SMC4-224ENST00000494612 FANCCQ00597 558 aa7.2□□□□□ -1.26
SMC4-224ENST00000494612 TMEM201Q5SNT2 666 aa7.2□□□□□ -1.26
SMC4-224ENST00000494612 CCDC84Q86UT8 332 aaPredicted RBP7.2□□□□□ -1.26
SMC4-224ENST00000494612 PHC3Q8NDX5 983 aa7.2□□□□□ -1.26
SMC4-224ENST00000494612 PDZD8Q8NEN9 1154 aa7.2□□□□□ -1.26
SMC4-224ENST00000494612 CYB5D2Q8WUJ1 264 aa7.2□□□□□ -1.26
SMC4-224ENST00000494612 JARID2Q92833 1246 aaPredicted RBP7.2□□□□□ -1.26
SMC4-224ENST00000494612 RNF34Q969K3 372 aa7.2□□□□□ -1.26
SMC4-224ENST00000494612 NOC4LQ9BVI4 516 aaKnown RBP7.2□□□□□ -1.26
SMC4-224ENST00000494612 RNF32Q9H0A6 362 aa7.2□□□□□ -1.26
SMC4-224ENST00000494612 IGSF5Q9NSI5 407 aa7.2□□□□□ -1.26
SMC4-224ENST00000494612 GPATCH2Q9NW75 528 aa7.2□□□□□ -1.26
SMC4-224ENST00000494612 USP31Q70CQ4 1352 aa7.2□□□□□ -1.26
SMC4-224ENST00000494612 NT5DC4Q86YG4 428 aa7.19□□□□□ -1.26
SMC4-224ENST00000494612 C19orf44Q9H6X5 657 aa7.19□□□□□ -1.26
SMC4-224ENST00000494612 DUSP13Q9UII6 198 aa7.19□□□□□ -1.26
SMC4-224ENST00000494612 GGT7Q9UJ14 662 aa7.19□□□□□ -1.26
SMC4-224ENST00000494612 FAM221AA4D161 298 aa7.18□□□□□ -1.26
SMC4-224ENST00000494612 LRRN2O75325 713 aa7.18□□□□□ -1.26
SMC4-224ENST00000494612 CILPO75339 1184 aa7.18□□□□□ -1.26
SMC4-224ENST00000494612 ERCC5P28715 1186 aaPredicted RBP7.18□□□□□ -1.26
SMC4-224ENST00000494612 ST13P50502 369 aaKnown RBP7.18□□□□□ -1.26
SMC4-224ENST00000494612 EGR3Q06889 387 aa7.18□□□□□ -1.26
SMC4-224ENST00000494612 NR0B2Q15466 257 aa7.18□□□□□ -1.26
SMC4-224ENST00000494612 TCERG1LQ5VWI1 586 aa7.18□□□□□ -1.26
SMC4-224ENST00000494612 BAHD1Q8TBE0 780 aaPredicted RBP7.18□□□□□ -1.26
SMC4-224ENST00000494612 COPRSQ9NQ92 184 aa7.18□□□□□ -1.26
SMC4-224ENST00000494612 PCDHGB7Q9Y5F8 929 aa7.18□□□□□ -1.26
SMC4-224ENST00000494612 PLCG1P19174 1290 aa7.17□□□□□ -1.26
SMC4-224ENST00000494612 TIGD5Q53EQ6 642 aa7.17□□□□□ -1.26
SMC4-224ENST00000494612 ZNF394Q53GI3 561 aa7.17□□□□□ -1.26
SMC4-224ENST00000494612 METTL16Q86W50 562 aaKnown RBP7.17□□□□□ -1.26
SMC4-224ENST00000494612 SLFN12Q8IYM2 578 aa7.17□□□□□ -1.26
SMC4-224ENST00000494612 LILRA2Q8N149 483 aa7.17□□□□□ -1.26
SMC4-224ENST00000494612 RNF141Q8WVD5 230 aa7.17□□□□□ -1.26
SMC4-224ENST00000494612 BORCS6Q96GS4 357 aa7.17□□□□□ -1.26
SMC4-224ENST00000494612 KCNC2Q96PR1 638 aa7.17□□□□□ -1.26
SMC4-224ENST00000494612 KCNH3Q9ULD8 1083 aa7.17□□□□□ -1.26
SMC4-224ENST00000494612 PCDHA11Q9Y5I1 949 aa7.17□□□□□ -1.26
SMC4-224ENST00000494612 PRR36Q9H6K5 1346 aa7.17□□□□□ -1.26
SMC4-224ENST00000494612 MINDY4BA8MYZ0 360 aa7.16□□□□□ -1.26
SMC4-224ENST00000494612 BNC2Q6ZN30 1099 aaPredicted RBP7.16□□□□□ -1.26
SMC4-224ENST00000494612 FAM13CQ8NE31 585 aa7.16□□□□□ -1.26
SMC4-224ENST00000494612 EBF1Q9UH73 591 aa7.16□□□□□ -1.26
SMC4-224ENST00000494612 CNOT6Q9ULM6 557 aaKnown RBP7.16□□□□□ -1.26
SMC4-224ENST00000494612 ZNF281Q9Y2X9 895 aa7.16□□□□□ -1.26
SMC4-224ENST00000494612 FITM1A5D6W6 292 aa7.15□□□□□ -1.26
SMC4-224ENST00000494612 YARSP54577 528 aaKnown RBP7.15□□□□□ -1.26
SMC4-224ENST00000494612 DLG4P78352 724 aa7.15□□□□□ -1.26
SMC4-224ENST00000494612 LMNB2Q03252 620 aa7.15□□□□□ -1.26
SMC4-224ENST00000494612 CAMK2GQ13555 558 aaPredicted RBP7.15□□□□□ -1.26
SMC4-224ENST00000494612 ZNF385BQ569K4 471 aa7.15□□□□□ -1.26
SMC4-224ENST00000494612 ERICH6BQ5W0A0 696 aa7.15□□□□□ -1.26
SMC4-224ENST00000494612 TMEM132EQ6IEE7 984 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms