RNA–Protein interactions for RNA: ENST00000493957.5

UBA3-211, Transcript of ubiquitin like modifier activating enzyme 3, human

TSL 3

Gene UBA3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBA3-211	ENST00000493957	ECM2	O94769	699 aa	Predicted RBP	13.87	□□□□□ -0.19
UBA3-211	ENST00000493957	NUBP1	P53384	320 aa		13.87	□□□□□ -0.19
UBA3-211	ENST00000493957	FAM47A	Q5JRC9	791 aa		13.87	□□□□□ -0.19
UBA3-211	ENST00000493957	ERICH6B	Q5W0A0	696 aa		13.87	□□□□□ -0.19
UBA3-211	ENST00000493957	TBC1D10C	Q8IV04	446 aa		13.87	□□□□□ -0.19
UBA3-211	ENST00000493957	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.87	□□□□□ -0.19
UBA3-211	ENST00000493957	CCDC17	Q96LX7	622 aa		13.87	□□□□□ -0.19
UBA3-211	ENST00000493957	MKNK2	Q9HBH9	465 aa		13.87	□□□□□ -0.19
UBA3-211	ENST00000493957	ZFYVE28	Q9HCC9	887 aa		13.87	□□□□□ -0.19
UBA3-211	ENST00000493957	ZCCHC17	Q9NP64	241 aa	Known RBP	13.87	□□□□□ -0.19
UBA3-211	ENST00000493957	CPA4	Q9UI42	421 aa		13.87	□□□□□ -0.19
UBA3-211	ENST00000493957	ZMYM6	O95789	1325 aa		13.87	□□□□□ -0.19
UBA3-211	ENST00000493957		A0A0G2JMZ2	1700 aa		13.87	□□□□□ -0.19
UBA3-211	ENST00000493957	PLXNB2	O15031	1838 aa		13.86	□□□□□ -0.19
UBA3-211	ENST00000493957	TLR2	O60603	784 aa		13.86	□□□□□ -0.19
UBA3-211	ENST00000493957	PEX10	O60683	326 aa		13.86	□□□□□ -0.19
UBA3-211	ENST00000493957	PTH1R	Q03431	593 aa		13.86	□□□□□ -0.19
UBA3-211	ENST00000493957	ICA1	Q05084	483 aa		13.86	□□□□□ -0.19
UBA3-211	ENST00000493957	BMP2KL	Q5H9B9	411 aa		13.86	□□□□□ -0.19
UBA3-211	ENST00000493957	CD99L2	Q8TCZ2	262 aa		13.86	□□□□□ -0.19
UBA3-211	ENST00000493957	KIAA1683	Q9H0B3	1180 aa		13.86	□□□□□ -0.19
UBA3-211	ENST00000493957	TMOD4	Q9NZQ9	345 aa		13.86	□□□□□ -0.19
UBA3-211	ENST00000493957	ANAPC4	Q9UJX5	808 aa		13.86	□□□□□ -0.19
UBA3-211	ENST00000493957	TAOK2	Q9UL54	1235 aa		13.86	□□□□□ -0.19
UBA3-211	ENST00000493957	IGKV6D-41	A0A0C4DH26	115 aa		13.85	□□□□□ -0.19
UBA3-211	ENST00000493957	C19orf81	C9J6K1	198 aa		13.85	□□□□□ -0.19
UBA3-211	ENST00000493957	SGSM2	O43147	1006 aa		13.85	□□□□□ -0.19
UBA3-211	ENST00000493957	FKTN	O75072	461 aa		13.85	□□□□□ -0.19
UBA3-211	ENST00000493957	EEF2	P13639	858 aa	Known RBP	13.85	□□□□□ -0.19
UBA3-211	ENST00000493957	MFAP1	P55081	439 aa	Known RBP	13.85	□□□□□ -0.19
UBA3-211	ENST00000493957	ATP2B2	Q01814	1243 aa		13.85	□□□□□ -0.19
UBA3-211	ENST00000493957	USP17L2	Q6R6M4	530 aa		13.85	□□□□□ -0.19
UBA3-211	ENST00000493957	PARK7	Q99497	189 aa	Known RBP	13.85	□□□□□ -0.19
UBA3-211	ENST00000493957	DSCC1	Q9BVC3	393 aa		13.85	□□□□□ -0.19
UBA3-211	ENST00000493957	ARHGAP39	Q9C0H5	1083 aa		13.85	□□□□□ -0.19
UBA3-211	ENST00000493957	ASCC2	Q9H1I8	757 aa	Predicted RBP	13.85	□□□□□ -0.19
UBA3-211	ENST00000493957	OCEL1	Q9H607	264 aa		13.85	□□□□□ -0.19
UBA3-211	ENST00000493957	RAD50	Q92878	1312 aa		13.85	□□□□□ -0.19
UBA3-211	ENST00000493957	PLIN4	Q96Q06	1357 aa		13.84	□□□□□ -0.19
UBA3-211	ENST00000493957	NMT2	O60551	498 aa		13.84	□□□□□ -0.19
UBA3-211	ENST00000493957	VCAM1	P19320	739 aa		13.84	□□□□□ -0.19
UBA3-211	ENST00000493957	CTGF	P29279	349 aa		13.84	□□□□□ -0.19
UBA3-211	ENST00000493957	PDE4B	Q07343	736 aa		13.84	□□□□□ -0.19
UBA3-211	ENST00000493957	NOM1	Q5C9Z4	860 aa	Known RBP	13.84	□□□□□ -0.19
UBA3-211	ENST00000493957	POTEE	Q6S8J3	1075 aa		13.84	□□□□□ -0.19
UBA3-211	ENST00000493957	C17orf99	Q6UX52	265 aa		13.84	□□□□□ -0.19
UBA3-211	ENST00000493957	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.84	□□□□□ -0.19
UBA3-211	ENST00000493957	PLCD3	Q8N3E9	789 aa		13.84	□□□□□ -0.19
UBA3-211	ENST00000493957	CEP95	Q96GE4	821 aa		13.84	□□□□□ -0.19
UBA3-211	ENST00000493957	C12orf42	Q96LP6	360 aa		13.84	□□□□□ -0.19
UBA3-211	ENST00000493957	SLC45A1	Q9Y2W3	748 aa		13.84	□□□□□ -0.19
UBA3-211	ENST00000493957	NEDD4	P46934	1319 aa		13.84	□□□□□ -0.19
UBA3-211	ENST00000493957	ZNFX1	Q9P2E3	1918 aa	Known RBP	13.84	□□□□□ -0.19
UBA3-211	ENST00000493957	SMCHD1	A6NHR9	2005 aa		13.83	□□□□□ -0.2
UBA3-211	ENST00000493957	ORC4	O43929	436 aa		13.83	□□□□□ -0.2
UBA3-211	ENST00000493957	SLC3A2	P08195	630 aa	Known RBP	13.83	□□□□□ -0.2
UBA3-211	ENST00000493957	FGR	P09769	529 aa		13.83	□□□□□ -0.2
UBA3-211	ENST00000493957	BCR	P11274	1271 aa		13.83	□□□□□ -0.2
UBA3-211	ENST00000493957	TFAP4	Q01664	338 aa		13.83	□□□□□ -0.2
UBA3-211	ENST00000493957	SP3	Q02447	781 aa		13.83	□□□□□ -0.2
UBA3-211	ENST00000493957	RRP12	Q5JTH9	1297 aa	Known RBP	13.83	□□□□□ -0.2
UBA3-211	ENST00000493957	SPICE1	Q8N0Z3	855 aa		13.83	□□□□□ -0.2
UBA3-211	ENST00000493957	NEDD1	Q8NHV4	660 aa		13.83	□□□□□ -0.2
UBA3-211	ENST00000493957	RUFY2	Q8WXA3	655 aa		13.83	□□□□□ -0.2
UBA3-211	ENST00000493957	KANSL2	Q9H9L4	492 aa		13.83	□□□□□ -0.2
UBA3-211	ENST00000493957	ARHGEF10L	Q9HCE6	1279 aa		13.83	□□□□□ -0.2
UBA3-211	ENST00000493957	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.83	□□□□□ -0.2
UBA3-211	ENST00000493957	TMX2	Q9Y320	296 aa		13.83	□□□□□ -0.2
UBA3-211	ENST00000493957	TAF6L	Q9Y6J9	622 aa		13.83	□□□□□ -0.2
UBA3-211	ENST00000493957	RANBP6	O60518	1105 aa	Known RBP	13.82	□□□□□ -0.2
UBA3-211	ENST00000493957	TSPY3	P0CV98	308 aa		13.82	□□□□□ -0.2
UBA3-211	ENST00000493957	TSPY8	P0CW00	308 aa		13.82	□□□□□ -0.2
UBA3-211	ENST00000493957	AKNAD1	Q5T1N1	836 aa		13.82	□□□□□ -0.2
UBA3-211	ENST00000493957	ANKRD13C	Q8N6S4	541 aa		13.82	□□□□□ -0.2
UBA3-211	ENST00000493957	STAG1	Q8WVM7	1258 aa		13.82	□□□□□ -0.2
UBA3-211	ENST00000493957	P2RX7	Q99572	595 aa	Known RBP	13.82	□□□□□ -0.2
UBA3-211	ENST00000493957	ESYT1	Q9BSJ8	1104 aa		13.82	□□□□□ -0.2
UBA3-211	ENST00000493957	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.82	□□□□□ -0.2
UBA3-211	ENST00000493957	IL17RB	Q9NRM6	502 aa		13.82	□□□□□ -0.2
UBA3-211	ENST00000493957	TOMM22	Q9NS69	142 aa		13.82	□□□□□ -0.2
UBA3-211	ENST00000493957	HTT	P42858	3142 aa		13.82	□□□□□ -0.2
UBA3-211	ENST00000493957	TSPY2	A6NKD2	308 aa		13.81	□□□□□ -0.2
UBA3-211	ENST00000493957	OSBP	P22059	807 aa		13.81	□□□□□ -0.2
UBA3-211	ENST00000493957	HOXA7	P31268	230 aa	Predicted RBP	13.81	□□□□□ -0.2
UBA3-211	ENST00000493957	USP14	P54578	494 aa		13.81	□□□□□ -0.2
UBA3-211	ENST00000493957	IRX3	P78415	501 aa	Predicted RBP	13.81	□□□□□ -0.2
UBA3-211	ENST00000493957	RASGRP2	Q7LDG7	609 aa		13.81	□□□□□ -0.2
UBA3-211	ENST00000493957	CTU1	Q7Z7A3	348 aa	Known RBP	13.81	□□□□□ -0.2
UBA3-211	ENST00000493957	TNS4	Q8IZW8	715 aa		13.81	□□□□□ -0.2
UBA3-211	ENST00000493957	LRRC47	Q8N1G4	583 aa	Known RBP	13.81	□□□□□ -0.2
UBA3-211	ENST00000493957	SMCR8	Q8TEV9	937 aa	Predicted RBP	13.81	□□□□□ -0.2
UBA3-211	ENST00000493957	CHMP4C	Q96CF2	233 aa		13.81	□□□□□ -0.2
UBA3-211	ENST00000493957	NUP88	Q99567	741 aa	Predicted RBP	13.81	□□□□□ -0.2
UBA3-211	ENST00000493957	MCOLN1	Q9GZU1	580 aa		13.81	□□□□□ -0.2
UBA3-211	ENST00000493957	VCPKMT	Q9H867	229 aa		13.81	□□□□□ -0.2
UBA3-211	ENST00000493957	ZNF287	Q9HBT7	754 aa		13.81	□□□□□ -0.2
UBA3-211	ENST00000493957	TXNRD2	Q9NNW7	524 aa		13.81	□□□□□ -0.2
UBA3-211	ENST00000493957	MTMR4	Q9NYA4	1195 aa		13.81	□□□□□ -0.2
UBA3-211	ENST00000493957	CLIP2	Q9UDT6	1046 aa		13.81	□□□□□ -0.2
UBA3-211	ENST00000493957	PNMA3	Q9UL41	463 aa		13.81	□□□□□ -0.2

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