RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 VCAM1P19320 739 aa23.27■■□□□ 1.32
LIME1-205ENST00000480139 HSPA4P34932 840 aa23.27■■□□□ 1.32
LIME1-205ENST00000480139 ATP2B2Q01814 1243 aa23.27■■□□□ 1.32
LIME1-205ENST00000480139 TAF1CQ15572 869 aaPredicted RBP23.27■■□□□ 1.32
LIME1-205ENST00000480139 ZYXQ15942 572 aaKnown RBP23.27■■□□□ 1.32
LIME1-205ENST00000480139 NOM1Q5C9Z4 860 aaKnown RBP23.27■■□□□ 1.32
LIME1-205ENST00000480139 RALYLQ86SE5 291 aaKnown RBP23.27■■□□□ 1.32
LIME1-205ENST00000480139 TTC14Q96N46 770 aa23.27■■□□□ 1.32
LIME1-205ENST00000480139 PARK7Q99497 189 aaKnown RBP23.27■■□□□ 1.32
LIME1-205ENST00000480139 ZSWIM5Q9P217 1185 aa23.27■■□□□ 1.32
LIME1-205ENST00000480139 PNMA3Q9UL41 463 aa23.27■■□□□ 1.32
LIME1-205ENST00000480139 NMT2O60551 498 aa23.26■■□□□ 1.31
LIME1-205ENST00000480139 GMCL1P1Q8NEA9 526 aa23.26■■□□□ 1.31
LIME1-205ENST00000480139 ZFYVE28Q9HCC9 887 aa23.26■■□□□ 1.31
LIME1-205ENST00000480139 STX8Q9UNK0 236 aa23.26■■□□□ 1.31
LIME1-205ENST00000480139 ZKSCAN1P17029 563 aaPredicted RBP23.25■■□□□ 1.31
LIME1-205ENST00000480139 CRHR2Q13324 411 aa23.25■■□□□ 1.31
LIME1-205ENST00000480139 DGKHQ86XP1 1220 aa23.25■■□□□ 1.31
LIME1-205ENST00000480139 MB21D2Q8IYB1 491 aaPredicted RBP23.25■■□□□ 1.31
LIME1-205ENST00000480139 ZSCAN10Q96SZ4 725 aaPredicted RBP23.25■■□□□ 1.31
LIME1-205ENST00000480139 USP26Q9BXU7 913 aa23.25■■□□□ 1.31
LIME1-205ENST00000480139 USP17L15C9J2P7 530 aa23.24■■□□□ 1.31
LIME1-205ENST00000480139 USP17L13C9JLJ4 530 aa23.24■■□□□ 1.31
LIME1-205ENST00000480139 USP17L11C9JVI0 530 aa23.24■■□□□ 1.31
LIME1-205ENST00000480139 USP17L18D6R9N7 530 aa23.24■■□□□ 1.31
LIME1-205ENST00000480139 USP17L22D6RA61 530 aa23.24■■□□□ 1.31
LIME1-205ENST00000480139 USP17L17D6RBQ6 530 aa23.24■■□□□ 1.31
LIME1-205ENST00000480139 USP17L19D6RCP7 530 aa23.24■■□□□ 1.31
LIME1-205ENST00000480139 USP17L20D6RJB6 530 aa23.24■■□□□ 1.31
LIME1-205ENST00000480139 WDR46O15213 610 aaKnown RBP23.24■■□□□ 1.31
LIME1-205ENST00000480139 FOXN1O15353 648 aa23.24■■□□□ 1.31
LIME1-205ENST00000480139 OSBPP22059 807 aa23.24■■□□□ 1.31
LIME1-205ENST00000480139 USP17L24Q0WX57 530 aa23.24■■□□□ 1.31
LIME1-205ENST00000480139 KRT32Q14532 448 aa23.24■■□□□ 1.31
LIME1-205ENST00000480139 KIAA1755Q5JYT7 1200 aa23.24■■□□□ 1.31
LIME1-205ENST00000480139 RCSD1Q6JBY9 416 aa23.24■■□□□ 1.31
LIME1-205ENST00000480139 ANKS1AQ92625 1134 aa23.24■■□□□ 1.31
LIME1-205ENST00000480139 MTA3Q9BTC8 594 aa23.24■■□□□ 1.31
LIME1-205ENST00000480139 ADGRA2Q96PE1 1338 aa23.24■■□□□ 1.31
LIME1-205ENST00000480139 PARP14Q460N5 1801 aa23.24■■□□□ 1.31
LIME1-205ENST00000480139 F5H6K3 240 aa23.23■■□□□ 1.31
LIME1-205ENST00000480139 TLR2O60603 784 aa23.23■■□□□ 1.31
LIME1-205ENST00000480139 TOP1P11387 765 aaKnown RBP23.23■■□□□ 1.31
LIME1-205ENST00000480139 CTCFP49711 727 aaPredicted RBP23.23■■□□□ 1.31
LIME1-205ENST00000480139 KLRC3Q07444 240 aa23.23■■□□□ 1.31
LIME1-205ENST00000480139 C8orf34Q49A92 452 aa23.23■■□□□ 1.31
LIME1-205ENST00000480139 CYB5R4Q7L1T6 521 aa23.23■■□□□ 1.31
LIME1-205ENST00000480139 LRRC47Q8N1G4 583 aaKnown RBP23.23■■□□□ 1.31
LIME1-205ENST00000480139 UBAC1Q9BSL1 405 aa23.23■■□□□ 1.31
LIME1-205ENST00000480139 ASCC2Q9H1I8 757 aaPredicted RBP23.23■■□□□ 1.31
LIME1-205ENST00000480139 TBC1D8O95759 1140 aa23.22■■□□□ 1.31
LIME1-205ENST00000480139 NDUFB10O96000 172 aa23.22■■□□□ 1.31
LIME1-205ENST00000480139 CATSPERGQ6ZRH7 1159 aa23.22■■□□□ 1.31
LIME1-205ENST00000480139 RASEFQ8IZ41 740 aa23.22■■□□□ 1.31
LIME1-205ENST00000480139 ZKSCAN3Q9BRR0 538 aa23.22■■□□□ 1.31
LIME1-205ENST00000480139 RPAP3Q9H6T3 665 aaPredicted RBP23.22■■□□□ 1.31
LIME1-205ENST00000480139 TNKSO95271 1327 aa23.22■■□□□ 1.31
LIME1-205ENST00000480139 RLFQ13129 1914 aa23.21■■□□□ 1.31
LIME1-205ENST00000480139 CYP2C8P10632 490 aa23.21■■□□□ 1.31
LIME1-205ENST00000480139 HSPA8P11142 646 aaKnown RBP23.21■■□□□ 1.31
LIME1-205ENST00000480139 MCCP23508 829 aa23.21■■□□□ 1.31
LIME1-205ENST00000480139 IRX3P78415 501 aaPredicted RBP23.21■■□□□ 1.31
LIME1-205ENST00000480139 SPICE1Q8N0Z3 855 aa23.21■■□□□ 1.31
LIME1-205ENST00000480139 ENAHQ8N8S7 591 aaPredicted RBP23.21■■□□□ 1.31
LIME1-205ENST00000480139 GMCL1Q96IK5 515 aa23.21■■□□□ 1.31
LIME1-205ENST00000480139 TMEM47Q9BQJ4 181 aa23.21■■□□□ 1.31
LIME1-205ENST00000480139 A0A0G2JMZ2 1700 aa23.2■■□□□ 1.3
LIME1-205ENST00000480139 MCM5P33992 734 aa23.2■■□□□ 1.3
LIME1-205ENST00000480139 SART3Q15020 963 aaKnown RBP23.2■■□□□ 1.3
LIME1-205ENST00000480139 SEC23AQ15436 765 aa23.2■■□□□ 1.3
LIME1-205ENST00000480139 SMCR8Q8TEV9 937 aaPredicted RBP23.2■■□□□ 1.3
LIME1-205ENST00000480139 GTF3C2Q8WUA4 911 aaPredicted RBP23.2■■□□□ 1.3
LIME1-205ENST00000480139 R3HDMLQ9H3Y0 253 aa23.2■■□□□ 1.3
LIME1-205ENST00000480139 SNX14Q9Y5W7 946 aa23.2■■□□□ 1.3
LIME1-205ENST00000480139 MYPNQ86TC9 1320 aa23.19■■□□□ 1.3
LIME1-205ENST00000480139 WDR19Q8NEZ3 1342 aa23.19■■□□□ 1.3
LIME1-205ENST00000480139 GCLCP48506 637 aaPredicted RBP23.19■■□□□ 1.3
LIME1-205ENST00000480139 ANTXR2P58335 489 aa23.19■■□□□ 1.3
LIME1-205ENST00000480139 SLFN13Q68D06 897 aa23.19■■□□□ 1.3
LIME1-205ENST00000480139 C17orf99Q6UX52 265 aa23.19■■□□□ 1.3
LIME1-205ENST00000480139 LBX2Q6XYB7 198 aa23.19■■□□□ 1.3
LIME1-205ENST00000480139 NEK1Q96PY6 1258 aa23.19■■□□□ 1.3
LIME1-205ENST00000480139 TANGO6Q9C0B7 1094 aa23.19■■□□□ 1.3
LIME1-205ENST00000480139 TSKSQ9UJT2 592 aa23.19■■□□□ 1.3
LIME1-205ENST00000480139 GPR25O00155 361 aa23.18■■□□□ 1.3
LIME1-205ENST00000480139 HMGB1P09429 215 aaKnown RBP23.18■■□□□ 1.3
LIME1-205ENST00000480139 HERVK_113P62684 666 aa23.18■■□□□ 1.3
LIME1-205ENST00000480139 ERICH2A1L162 156 aa23.17■■□□□ 1.3
LIME1-205ENST00000480139 RAD21O60216 631 aa23.17■■□□□ 1.3
LIME1-205ENST00000480139 BCRP11274 1271 aa23.17■■□□□ 1.3
LIME1-205ENST00000480139 COG2Q14746 738 aa23.17■■□□□ 1.3
LIME1-205ENST00000480139 ADCK5Q3MIX3 580 aa23.17■■□□□ 1.3
LIME1-205ENST00000480139 FAM83BQ5T0W9 1011 aa23.17■■□□□ 1.3
LIME1-205ENST00000480139 IFIT1BQ5T764 474 aaKnown RBP23.17■■□□□ 1.3
LIME1-205ENST00000480139 DCAF4Q8WV16 495 aa23.17■■□□□ 1.3
LIME1-205ENST00000480139 TMEM87BQ96K49 555 aa23.17■■□□□ 1.3
LIME1-205ENST00000480139 P2RX7Q99572 595 aaKnown RBP23.17■■□□□ 1.3
LIME1-205ENST00000480139 KAT14Q9H8E8 782 aa23.17■■□□□ 1.3
LIME1-205ENST00000480139 HOXC10Q9NYD6 342 aa23.17■■□□□ 1.3
LIME1-205ENST00000480139 IFIT3O14879 490 aaKnown RBP23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms