RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 A0A1B0GVL5 298 aa10.97□□□□□ -0.65
HDAC3-205ENST00000469550 WNT10BO00744 389 aa10.97□□□□□ -0.65
HDAC3-205ENST00000469550 CMA1P23946 247 aa10.97□□□□□ -0.65
HDAC3-205ENST00000469550 RFX5P48382 616 aaPredicted RBP10.97□□□□□ -0.65
HDAC3-205ENST00000469550 APOBRQ0VD83 1088 aa10.97□□□□□ -0.65
HDAC3-205ENST00000469550 STK38Q15208 465 aa10.97□□□□□ -0.65
HDAC3-205ENST00000469550 TXNRD3Q86VQ6 643 aa10.97□□□□□ -0.65
HDAC3-205ENST00000469550 REXO1L1PQ8IX06 675 aa10.97□□□□□ -0.65
HDAC3-205ENST00000469550 OGFOD1Q8N543 542 aa10.97□□□□□ -0.65
HDAC3-205ENST00000469550 EDC3Q96F86 508 aaKnown RBP10.97□□□□□ -0.65
HDAC3-205ENST00000469550 SIL1Q9H173 461 aa10.97□□□□□ -0.65
HDAC3-205ENST00000469550 PSD3Q9NYI0 1048 aa10.97□□□□□ -0.65
HDAC3-205ENST00000469550 TUBE1Q9UJT0 475 aa10.97□□□□□ -0.65
HDAC3-205ENST00000469550 SPTLC2O15270 562 aa10.97□□□□□ -0.65
HDAC3-205ENST00000469550 ZNF202O95125 648 aa10.97□□□□□ -0.65
HDAC3-205ENST00000469550 FDPSP14324 419 aaKnown RBP10.97□□□□□ -0.65
HDAC3-205ENST00000469550 SF3A1Q15459 793 aaKnown RBP10.97□□□□□ -0.65
HDAC3-205ENST00000469550 NBPF9Q3BBW0 867 aa10.97□□□□□ -0.65
HDAC3-205ENST00000469550 NOM1Q5C9Z4 860 aaKnown RBP10.97□□□□□ -0.65
HDAC3-205ENST00000469550 ARAP2Q8WZ64 1704 aa10.97□□□□□ -0.65
HDAC3-205ENST00000469550 LAMA4Q16363 1823 aa10.96□□□□□ -0.65
HDAC3-205ENST00000469550 ARHGAP6O43182 974 aa10.96□□□□□ -0.65
HDAC3-205ENST00000469550 TRPA1O75762 1119 aa10.96□□□□□ -0.65
HDAC3-205ENST00000469550 TBC1D8O95759 1140 aa10.96□□□□□ -0.65
HDAC3-205ENST00000469550 MAP3K9P80192 1104 aa10.96□□□□□ -0.65
HDAC3-205ENST00000469550 RABL6Q3YEC7 729 aaPredicted RBP10.96□□□□□ -0.65
HDAC3-205ENST00000469550 JAKMIP3Q5VZ66 844 aa10.96□□□□□ -0.65
HDAC3-205ENST00000469550 CCDC129Q6ZRS4 1044 aa10.96□□□□□ -0.65
HDAC3-205ENST00000469550 APOBEC3FQ8IUX4 373 aaKnown RBP10.96□□□□□ -0.65
HDAC3-205ENST00000469550 LRRC2Q9BYS8 371 aa10.96□□□□□ -0.65
HDAC3-205ENST00000469550 HSD3B7Q9H2F3 369 aa10.96□□□□□ -0.65
HDAC3-205ENST00000469550 ANKRD18BA2A2Z9 1011 aa10.96□□□□□ -0.66
HDAC3-205ENST00000469550 E7EWF7 191 aa10.96□□□□□ -0.66
HDAC3-205ENST00000469550 DHX16O60231 1041 aaKnown RBP10.96□□□□□ -0.66
HDAC3-205ENST00000469550 URI1O94763 535 aaPredicted RBP10.96□□□□□ -0.66
HDAC3-205ENST00000469550 KLRK1P26718 216 aa10.96□□□□□ -0.66
HDAC3-205ENST00000469550 FKBP1AP62942 108 aaKnown RBP10.96□□□□□ -0.66
HDAC3-205ENST00000469550 CCT2P78371 535 aaKnown RBP10.96□□□□□ -0.66
HDAC3-205ENST00000469550 PTPN12Q05209 780 aaKnown RBP10.96□□□□□ -0.66
HDAC3-205ENST00000469550 CHRNDQ07001 517 aa10.96□□□□□ -0.66
HDAC3-205ENST00000469550 AXDND1Q5T1B0 1012 aaPredicted RBP10.96□□□□□ -0.66
HDAC3-205ENST00000469550 TTLL5Q6EMB2 1281 aa10.96□□□□□ -0.66
HDAC3-205ENST00000469550 CC2D1AQ6P1N0 951 aaPredicted RBP10.96□□□□□ -0.66
HDAC3-205ENST00000469550 RSRC2Q7L4I2 434 aaKnown RBP10.96□□□□□ -0.66
HDAC3-205ENST00000469550 VSTM4Q8IW00 320 aa10.96□□□□□ -0.66
HDAC3-205ENST00000469550 MTMR14Q8NCE2 650 aa10.96□□□□□ -0.66
HDAC3-205ENST00000469550 ERCC4Q92889 916 aaPredicted RBP10.96□□□□□ -0.66
HDAC3-205ENST00000469550 SEC62Q99442 399 aaKnown RBP10.96□□□□□ -0.66
HDAC3-205ENST00000469550 MXD3Q9BW11 206 aa10.96□□□□□ -0.66
HDAC3-205ENST00000469550 CARD6Q9BX69 1037 aa10.96□□□□□ -0.66
HDAC3-205ENST00000469550 HDAC9Q9UKV0 1011 aa10.96□□□□□ -0.66
HDAC3-205ENST00000469550 FAM237AA0A1B0GTK4 181 aa10.95□□□□□ -0.66
HDAC3-205ENST00000469550 NF2P35240 595 aa10.95□□□□□ -0.66
HDAC3-205ENST00000469550 UBASH3AP57075 661 aa10.95□□□□□ -0.66
HDAC3-205ENST00000469550 FOXO4P98177 505 aa10.95□□□□□ -0.66
HDAC3-205ENST00000469550 MYL5Q02045 173 aa10.95□□□□□ -0.66
HDAC3-205ENST00000469550 RAD51AP2Q09MP3 1159 aa10.95□□□□□ -0.66
HDAC3-205ENST00000469550 TFCP2Q12800 502 aa10.95□□□□□ -0.66
HDAC3-205ENST00000469550 EPHA10Q5JZY3 1008 aa10.95□□□□□ -0.66
HDAC3-205ENST00000469550 MYSM1Q5VVJ2 828 aa10.95□□□□□ -0.66
HDAC3-205ENST00000469550 CTU1Q7Z7A3 348 aaKnown RBP10.95□□□□□ -0.66
HDAC3-205ENST00000469550 FBXO18Q8NFZ0 1043 aa10.95□□□□□ -0.66
HDAC3-205ENST00000469550 IPO4Q8TEX9 1081 aaKnown RBP10.95□□□□□ -0.66
HDAC3-205ENST00000469550 RABGGTAQ92696 567 aa10.95□□□□□ -0.66
HDAC3-205ENST00000469550 CFHR5Q9BXR6 569 aa10.95□□□□□ -0.66
HDAC3-205ENST00000469550 CD209Q9NNX6 404 aa10.95□□□□□ -0.66
HDAC3-205ENST00000469550 FEZ2Q9UHY8 353 aaPredicted RBP10.95□□□□□ -0.66
HDAC3-205ENST00000469550 CLIC4Q9Y696 253 aa10.95□□□□□ -0.66
HDAC3-205ENST00000469550 VWA3AA6NCI4 1184 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 TM4SF4P48230 202 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 SMC1AQ14683 1233 aaKnown RBP10.94□□□□□ -0.66
HDAC3-205ENST00000469550 ZMYM1Q5SVZ6 1142 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 ELOA2Q8IYF1 753 aaPredicted RBP10.94□□□□□ -0.66
HDAC3-205ENST00000469550 MSL3Q8N5Y2 521 aaKnown RBP10.94□□□□□ -0.66
HDAC3-205ENST00000469550 KLHDC4Q8TBB5 520 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 EXOC4Q96A65 974 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 NCOA5Q9HCD5 579 aaKnown RBP10.94□□□□□ -0.66
HDAC3-205ENST00000469550 ARFGAP3Q9NP61 516 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.94□□□□□ -0.66
HDAC3-205ENST00000469550 UBE2Q2LH0YL09 131 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 FANCGO15287 622 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 SLC34A2O95436 690 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 TOP1P11387 765 aaKnown RBP10.94□□□□□ -0.66
HDAC3-205ENST00000469550 IL1R1P14778 569 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 PFKFB1P16118 471 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 OAS2P29728 719 aaKnown RBP10.94□□□□□ -0.66
HDAC3-205ENST00000469550 FOSBP53539 338 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 LDLRAD1Q5T700 205 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 GORABQ5T7V8 394 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 ANO1Q5XXA6 986 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 SYNE3Q6ZMZ3 975 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 MOB2Q70IA6 237 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 TMEM139Q8IV31 216 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 FBXW7Q969H0 707 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 C8orf76Q96K31 380 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 DBNDD2Q9BQY9 259 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 GPR108Q9NPR9 543 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 HPSEQ9Y251 543 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 PPP2R2CQ9Y2T4 447 aa10.94□□□□□ -0.66
HDAC3-205ENST00000469550 PPP2R3BQ9Y5P8 575 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms