RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 ANO2Q9NQ90 1003 aa12.62□□□□□ -0.39
UBR4-208ENST00000459947 FAM110CQ1W6H9 321 aa12.61□□□□□ -0.39
UBR4-208ENST00000459947 CTU1Q7Z7A3 348 aaKnown RBP12.61□□□□□ -0.39
UBR4-208ENST00000459947 DGKHQ86XP1 1220 aa12.61□□□□□ -0.39
UBR4-208ENST00000459947 NCOA7Q8NI08 942 aa12.61□□□□□ -0.39
UBR4-208ENST00000459947 ZKSCAN1P17029 563 aaPredicted RBP12.61□□□□□ -0.39
UBR4-208ENST00000459947 FAM160B2Q86V87 743 aa12.61□□□□□ -0.39
UBR4-208ENST00000459947 DCAF4Q8WV16 495 aa12.61□□□□□ -0.39
UBR4-208ENST00000459947 EMILIN3Q9NT22 766 aa12.61□□□□□ -0.39
UBR4-208ENST00000459947 MORF4L1Q9UBU8 362 aa12.61□□□□□ -0.39
UBR4-208ENST00000459947 RBM8AQ9Y5S9 174 aaKnown RBP12.61□□□□□ -0.39
UBR4-208ENST00000459947 ERICH2A1L162 156 aa12.61□□□□□ -0.39
UBR4-208ENST00000459947 LBX1P52954 281 aa12.61□□□□□ -0.39
UBR4-208ENST00000459947 RABGAP1Q9Y3P9 1069 aa12.61□□□□□ -0.39
UBR4-208ENST00000459947 NOVP48745 357 aa12.6□□□□□ -0.39
UBR4-208ENST00000459947 ATP2B2Q01814 1243 aa12.6□□□□□ -0.39
UBR4-208ENST00000459947 CATSPERGQ6ZRH7 1159 aa12.6□□□□□ -0.39
UBR4-208ENST00000459947 UBAC1Q9BSL1 405 aa12.6□□□□□ -0.39
UBR4-208ENST00000459947 LSG1Q9H089 658 aaKnown RBP12.6□□□□□ -0.39
UBR4-208ENST00000459947 PLA2G6O60733 806 aa12.6□□□□□ -0.39
UBR4-208ENST00000459947 VCAM1P19320 739 aa12.6□□□□□ -0.39
UBR4-208ENST00000459947 RRP12Q5JTH9 1297 aaKnown RBP12.6□□□□□ -0.39
UBR4-208ENST00000459947 C17orf99Q6UX52 265 aa12.6□□□□□ -0.39
UBR4-208ENST00000459947 ANKS1AQ92625 1134 aa12.6□□□□□ -0.39
UBR4-208ENST00000459947 ASCC2Q9H1I8 757 aaPredicted RBP12.6□□□□□ -0.39
UBR4-208ENST00000459947 JAG1P78504 1218 aa12.6□□□□□ -0.39
UBR4-208ENST00000459947 CHURC1Q8WUH1 139 aa12.6□□□□□ -0.39
UBR4-208ENST00000459947 GMCL1Q96IK5 515 aa12.6□□□□□ -0.39
UBR4-208ENST00000459947 WDR19Q8NEZ3 1342 aa12.6□□□□□ -0.39
UBR4-208ENST00000459947 TBC1D8O95759 1140 aa12.59□□□□□ -0.39
UBR4-208ENST00000459947 HMGB1P09429 215 aaKnown RBP12.59□□□□□ -0.39
UBR4-208ENST00000459947 FCGRTP55899 365 aa12.59□□□□□ -0.39
UBR4-208ENST00000459947 COG2Q14746 738 aa12.59□□□□□ -0.39
UBR4-208ENST00000459947 ACER1Q8TDN7 264 aa12.59□□□□□ -0.39
UBR4-208ENST00000459947 CEP95Q96GE4 821 aa12.59□□□□□ -0.39
UBR4-208ENST00000459947 RPAP3Q9H6T3 665 aaPredicted RBP12.59□□□□□ -0.39
UBR4-208ENST00000459947 FEM1BQ9UK73 627 aa12.59□□□□□ -0.39
UBR4-208ENST00000459947 SLURP2P0DP57 97 aa12.59□□□□□ -0.39
UBR4-208ENST00000459947 BCRP11274 1271 aa12.59□□□□□ -0.39
UBR4-208ENST00000459947 HAND2P61296 217 aa12.59□□□□□ -0.39
UBR4-208ENST00000459947 CLIP2Q9UDT6 1046 aa12.59□□□□□ -0.39
UBR4-208ENST00000459947 CTDP1Q9Y5B0 961 aaPredicted RBP12.59□□□□□ -0.39
UBR4-208ENST00000459947 PRDM1O75626 825 aa12.59□□□□□ -0.39
UBR4-208ENST00000459947 CCDC84Q86UT8 332 aaPredicted RBP12.59□□□□□ -0.39
UBR4-208ENST00000459947 TBC1D10CQ8IV04 446 aa12.59□□□□□ -0.39
UBR4-208ENST00000459947 TMTC2Q8N394 836 aa12.59□□□□□ -0.39
UBR4-208ENST00000459947 MYH4Q9Y623 1939 aa12.59□□□□□ -0.39
UBR4-208ENST00000459947 CAPN2P17655 700 aa12.58□□□□□ -0.4
UBR4-208ENST00000459947 HERVK_113P62684 666 aa12.58□□□□□ -0.4
UBR4-208ENST00000459947 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.58□□□□□ -0.4
UBR4-208ENST00000459947 TANGO6Q9C0B7 1094 aa12.58□□□□□ -0.4
UBR4-208ENST00000459947 SLFN13Q68D06 897 aa12.58□□□□□ -0.4
UBR4-208ENST00000459947 SHCBP1Q8NEM2 672 aa12.58□□□□□ -0.4
UBR4-208ENST00000459947 MAPK4P31152 587 aa12.58□□□□□ -0.4
UBR4-208ENST00000459947 TSGA10IPQ3SY00 556 aa12.58□□□□□ -0.4
UBR4-208ENST00000459947 TREML2Q5T2D2 321 aa12.58□□□□□ -0.4
UBR4-208ENST00000459947 PTH1RQ03431 593 aa12.57□□□□□ -0.4
UBR4-208ENST00000459947 TRAF1Q13077 416 aa12.57□□□□□ -0.4
UBR4-208ENST00000459947 FAM47AQ5JRC9 791 aa12.57□□□□□ -0.4
UBR4-208ENST00000459947 CCAR1Q8IX12 1150 aaKnown RBP12.57□□□□□ -0.4
UBR4-208ENST00000459947 TRMT44Q8IYL2 757 aaKnown RBP12.57□□□□□ -0.4
UBR4-208ENST00000459947 IL27Q8NEV9 243 aa12.57□□□□□ -0.4
UBR4-208ENST00000459947 GPRC5AQ8NFJ5 357 aa12.57□□□□□ -0.4
UBR4-208ENST00000459947 ZNF296Q8WUU4 475 aaPredicted RBP12.57□□□□□ -0.4
UBR4-208ENST00000459947 TMEM87BQ96K49 555 aa12.57□□□□□ -0.4
UBR4-208ENST00000459947 MAF1Q9H063 256 aa12.57□□□□□ -0.4
UBR4-208ENST00000459947 STX8Q9UNK0 236 aa12.57□□□□□ -0.4
UBR4-208ENST00000459947 F5H6K3 240 aa12.57□□□□□ -0.4
UBR4-208ENST00000459947 BMP3P12645 472 aa12.57□□□□□ -0.4
UBR4-208ENST00000459947 KLRC3Q07444 240 aa12.57□□□□□ -0.4
UBR4-208ENST00000459947 GPATCH4Q5T3I0 446 aaKnown RBP12.57□□□□□ -0.4
UBR4-208ENST00000459947 KAT14Q9H8E8 782 aa12.57□□□□□ -0.4
UBR4-208ENST00000459947 EFCC1Q9HA90 598 aa12.57□□□□□ -0.4
UBR4-208ENST00000459947 PSMA5P28066 241 aa12.57□□□□□ -0.4
UBR4-208ENST00000459947 DSG3P32926 999 aa12.57□□□□□ -0.4
UBR4-208ENST00000459947 OAZ1P54368 228 aa12.57□□□□□ -0.4
UBR4-208ENST00000459947 STK11IPQ8N1F8 1099 aa12.57□□□□□ -0.4
UBR4-208ENST00000459947 COA7Q96BR5 231 aa12.57□□□□□ -0.4
UBR4-208ENST00000459947 ZSCAN10Q96SZ4 725 aaPredicted RBP12.57□□□□□ -0.4
UBR4-208ENST00000459947 CWC22Q9HCG8 908 aaKnown RBP12.57□□□□□ -0.4
UBR4-208ENST00000459947 A0A1W2PRG0 241 aa12.56□□□□□ -0.4
UBR4-208ENST00000459947 ZBED4O75132 1171 aa12.56□□□□□ -0.4
UBR4-208ENST00000459947 KDM4AO75164 1064 aa12.56□□□□□ -0.4
UBR4-208ENST00000459947 SLC25A27O95847 323 aa12.56□□□□□ -0.4
UBR4-208ENST00000459947 ZYXQ15942 572 aaKnown RBP12.56□□□□□ -0.4
UBR4-208ENST00000459947 CREB3L3Q68CJ9 461 aa12.56□□□□□ -0.4
UBR4-208ENST00000459947 SLF1Q9BQI6 1058 aa12.56□□□□□ -0.4
UBR4-208ENST00000459947 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.56□□□□□ -0.4
UBR4-208ENST00000459947 NEDD4P46934 1319 aa12.56□□□□□ -0.4
UBR4-208ENST00000459947 NDUFB10O96000 172 aa12.56□□□□□ -0.4
UBR4-208ENST00000459947 CYP21A2P08686 494 aa12.56□□□□□ -0.4
UBR4-208ENST00000459947 MCM5P33992 734 aa12.56□□□□□ -0.4
UBR4-208ENST00000459947 EVX2Q03828 476 aa12.56□□□□□ -0.4
UBR4-208ENST00000459947 NECTIN1Q15223 517 aa12.56□□□□□ -0.4
UBR4-208ENST00000459947 TKFCQ3LXA3 575 aa12.56□□□□□ -0.4
UBR4-208ENST00000459947 SIAH1Q8IUQ4 282 aa12.56□□□□□ -0.4
UBR4-208ENST00000459947 E7EWF7 191 aa12.56□□□□□ -0.4
UBR4-208ENST00000459947 SLC27A2O14975 620 aa12.56□□□□□ -0.4
UBR4-208ENST00000459947 FLOT1O75955 427 aa12.56□□□□□ -0.4
UBR4-208ENST00000459947 LACTBP83111 547 aaPredicted RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms