RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 BMP15O95972 392 aa13.42□□□□□ -0.26
CD44-209ENST00000433892 SLC4A8Q2Y0W8 1093 aa13.42□□□□□ -0.26
CD44-209ENST00000433892 CLEC4GQ6UXB4 293 aa13.42□□□□□ -0.26
CD44-209ENST00000433892 PIK3AP1Q6ZUJ8 805 aa13.42□□□□□ -0.26
CD44-209ENST00000433892 CTCFLQ8NI51 663 aaPredicted RBP13.42□□□□□ -0.26
CD44-209ENST00000433892 GSDMAQ96QA5 445 aa13.42□□□□□ -0.26
CD44-209ENST00000433892 SRRTQ9BXP5 876 aaKnown RBP13.42□□□□□ -0.26
CD44-209ENST00000433892 TFCP2L1Q9NZI6 479 aa13.42□□□□□ -0.26
CD44-209ENST00000433892 LAMB2P55268 1798 aa13.42□□□□□ -0.26
CD44-209ENST00000433892 GOLGA6L9A6NEM1 432 aa13.42□□□□□ -0.26
CD44-209ENST00000433892 SOWAHDA6NJG2 315 aa13.42□□□□□ -0.26
CD44-209ENST00000433892 PPP1R3GB7ZBB8 358 aa13.42□□□□□ -0.26
CD44-209ENST00000433892 AKR1B15C9JRZ8 316 aaPredicted RBP13.42□□□□□ -0.26
CD44-209ENST00000433892 ADAMTS3O15072 1205 aa13.42□□□□□ -0.26
CD44-209ENST00000433892 TADA3O75528 432 aa13.42□□□□□ -0.26
CD44-209ENST00000433892 CYP2D6P10635 497 aa13.42□□□□□ -0.26
CD44-209ENST00000433892 PCP11498 1178 aaKnown RBP13.42□□□□□ -0.26
CD44-209ENST00000433892 KARSQ15046 597 aaKnown RBP13.42□□□□□ -0.26
CD44-209ENST00000433892 IGSF22Q8N9C0 903 aa13.42□□□□□ -0.26
CD44-209ENST00000433892 BLZF1Q9H2G9 400 aa13.42□□□□□ -0.26
CD44-209ENST00000433892 DCP1AQ9NPI6 582 aaPredicted RBP13.42□□□□□ -0.26
CD44-209ENST00000433892 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.42□□□□□ -0.26
CD44-209ENST00000433892 MCM7P33993 719 aa13.41□□□□□ -0.26
CD44-209ENST00000433892 NLRP5P59047 1200 aa13.41□□□□□ -0.26
CD44-209ENST00000433892 ATP2C1P98194 919 aaPredicted RBP13.41□□□□□ -0.26
CD44-209ENST00000433892 RBL2Q08999 1139 aa13.41□□□□□ -0.26
CD44-209ENST00000433892 FBXO33Q7Z6M2 555 aa13.41□□□□□ -0.26
CD44-209ENST00000433892 ST7Q9NRC1 585 aa13.41□□□□□ -0.26
CD44-209ENST00000433892 JAG2Q9Y219 1238 aa13.41□□□□□ -0.26
CD44-209ENST00000433892 WNK3Q9BYP7 1800 aa13.41□□□□□ -0.26
CD44-209ENST00000433892 EFCAB8A8MWE9 144 aa13.41□□□□□ -0.26
CD44-209ENST00000433892 SCG2P13521 617 aa13.41□□□□□ -0.26
CD44-209ENST00000433892 PRDX5P30044 214 aa13.41□□□□□ -0.26
CD44-209ENST00000433892 GABPB1Q06547 395 aaPredicted RBP13.41□□□□□ -0.26
CD44-209ENST00000433892 CDKAL1Q5VV42 579 aa13.41□□□□□ -0.26
CD44-209ENST00000433892 PPFIBP1Q86W92 1011 aa13.41□□□□□ -0.26
CD44-209ENST00000433892 LINC00116Q8NCU8 138 aa13.41□□□□□ -0.26
CD44-209ENST00000433892 IRX2Q9BZI1 471 aaPredicted RBP13.41□□□□□ -0.26
CD44-209ENST00000433892 EPC1Q9H2F5 836 aa13.41□□□□□ -0.26
CD44-209ENST00000433892 MRPL44Q9H9J2 332 aaKnown RBP13.41□□□□□ -0.26
CD44-209ENST00000433892 ADD3Q9UEY8 706 aaKnown RBP13.41□□□□□ -0.26
CD44-209ENST00000433892 THRAP3Q9Y2W1 955 aaKnown RBP13.41□□□□□ -0.26
CD44-209ENST00000433892 XDHP47989 1333 aa13.4□□□□□ -0.26
CD44-209ENST00000433892 ORC4O43929 436 aa13.4□□□□□ -0.26
CD44-209ENST00000433892 MAP3K9P80192 1104 aa13.4□□□□□ -0.26
CD44-209ENST00000433892 BMS1Q14692 1282 aaKnown RBP13.4□□□□□ -0.26
CD44-209ENST00000433892 IL17AQ16552 155 aa13.4□□□□□ -0.26
CD44-209ENST00000433892 CT47A1Q5JQC4 288 aaPredicted RBP13.4□□□□□ -0.26
CD44-209ENST00000433892 TBC1D9BQ66K14 1250 aa13.4□□□□□ -0.26
CD44-209ENST00000433892 ZNF771Q7L3S4 317 aaPredicted RBP13.4□□□□□ -0.26
CD44-209ENST00000433892 CCDC24Q8N4L8 307 aa13.4□□□□□ -0.26
CD44-209ENST00000433892 PANX2Q96RD6 677 aa13.4□□□□□ -0.26
CD44-209ENST00000433892 CRNKL1Q9BZJ0 848 aaKnown RBP13.4□□□□□ -0.26
CD44-209ENST00000433892 CTNND2Q9UQB3 1225 aa13.4□□□□□ -0.26
CD44-209ENST00000433892 FHOD1Q9Y613 1164 aa13.4□□□□□ -0.26
CD44-209ENST00000433892 RREB1Q92766 1687 aa13.4□□□□□ -0.26
CD44-209ENST00000433892 TSPY2A6NKD2 308 aa13.39□□□□□ -0.27
CD44-209ENST00000433892 E2F4Q16254 413 aa13.39□□□□□ -0.27
CD44-209ENST00000433892 IQUBQ8NA54 791 aa13.39□□□□□ -0.27
CD44-209ENST00000433892 KIFC2Q96AC6 838 aa13.39□□□□□ -0.27
CD44-209ENST00000433892 LZTFL1Q9NQ48 299 aa13.39□□□□□ -0.27
CD44-209ENST00000433892 A0A0U1RQJ8 604 aa13.39□□□□□ -0.27
CD44-209ENST00000433892 KDM4FA0A1W2PPD8 638 aa13.39□□□□□ -0.27
CD44-209ENST00000433892 CCDC175P0C221 793 aa13.39□□□□□ -0.27
CD44-209ENST00000433892 CDC25AP30304 524 aa13.39□□□□□ -0.27
CD44-209ENST00000433892 HIBADHP31937 336 aaKnown RBP13.39□□□□□ -0.27
CD44-209ENST00000433892 CCT6AP40227 531 aaKnown RBP13.39□□□□□ -0.27
CD44-209ENST00000433892 PBX1P40424 430 aa13.39□□□□□ -0.27
CD44-209ENST00000433892 RPS8P62241 208 aaKnown RBP13.39□□□□□ -0.27
CD44-209ENST00000433892 RAD9BQ6WBX8 426 aa13.39□□□□□ -0.27
CD44-209ENST00000433892 ATRIPQ8WXE1 791 aa13.39□□□□□ -0.27
CD44-209ENST00000433892 MTRQ99707 1265 aa13.39□□□□□ -0.27
CD44-209ENST00000433892 MRFAP1Q9Y605 127 aa13.39□□□□□ -0.27
CD44-209ENST00000433892 MYH13Q9UKX3 1938 aa13.39□□□□□ -0.27
CD44-209ENST00000433892 SEMA3EO15041 775 aa13.38□□□□□ -0.27
CD44-209ENST00000433892 KIF20AO95235 890 aa13.38□□□□□ -0.27
CD44-209ENST00000433892 PPP2R3AQ06190 1150 aa13.38□□□□□ -0.27
CD44-209ENST00000433892 TERF2Q15554 542 aa13.38□□□□□ -0.27
CD44-209ENST00000433892 PFKFB3Q16875 520 aaPredicted RBP13.38□□□□□ -0.27
CD44-209ENST00000433892 FILIP1LQ4L180 1135 aa13.38□□□□□ -0.27
CD44-209ENST00000433892 SMARCC1Q92922 1105 aaPredicted RBP13.38□□□□□ -0.27
CD44-209ENST00000433892 CTAGE1Q96RT6 745 aa13.38□□□□□ -0.27
CD44-209ENST00000433892 ATP8A2Q9NTI2 1148 aa13.38□□□□□ -0.27
CD44-209ENST00000433892 ARGLU1Q9NWB6 273 aaPredicted RBP13.38□□□□□ -0.27
CD44-209ENST00000433892 PNMA6AP0CW24 399 aaPredicted RBP13.38□□□□□ -0.27
CD44-209ENST00000433892 CASP14P31944 242 aa13.38□□□□□ -0.27
CD44-209ENST00000433892 RRAGBQ5VZM2 374 aa13.38□□□□□ -0.27
CD44-209ENST00000433892 RCSD1Q6JBY9 416 aa13.38□□□□□ -0.27
CD44-209ENST00000433892 PDXDC2PQ6P474 469 aa13.38□□□□□ -0.27
CD44-209ENST00000433892 TMCO3Q6UWJ1 677 aa13.38□□□□□ -0.27
CD44-209ENST00000433892 CCDC12Q8WUD4 166 aaPredicted RBP13.38□□□□□ -0.27
CD44-209ENST00000433892 MCM9Q9NXL9 1143 aa13.38□□□□□ -0.27
CD44-209ENST00000433892 ADGRG1Q9Y653 693 aa13.38□□□□□ -0.27
CD44-209ENST00000433892 A0A1B0GUL6 1792 aa13.38□□□□□ -0.27
CD44-209ENST00000433892 SCN7AQ01118 1682 aa13.37□□□□□ -0.27
CD44-209ENST00000433892 ROBO1Q9Y6N7 1651 aa13.37□□□□□ -0.27
CD44-209ENST00000433892 MFAP3LO75121 409 aa13.37□□□□□ -0.27
CD44-209ENST00000433892 USP17L8P0C7I0 530 aa13.37□□□□□ -0.27
CD44-209ENST00000433892 TRAPPC10P48553 1259 aa13.37□□□□□ -0.27
CD44-209ENST00000433892 FXR1P51114 621 aaKnown RBP eCLIP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms